LOC122329169


Basic Information

Item Value
gene id LOC122329169
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 2925308 ~ 2943806 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU228687
GGCCAGGGCGGCCAGGGCCAGGGCGGCCAGGGCCAGGGCGGCCAGGGCCAGGGCGGCCAGGGCCAAGGCGGCCAGGGCCAAGGCGGCCAGGGCCAAGGcggccagggccaaggaggccagggccaaggaggccagggccaaggaggccagggccaaggaggccagggccaaggaggccaggGCCAAGGAGGCCAGGGTGGCAGCCAGGGCCAGGGGGGTGGACAGGGTGGCAGCCGGGGAGGTAAATAAGTCTTTTATTGTTCTGAGGTTAGGGAAGTTGTGAAATGTGTCCAGGTATTTGGTCCAGCTAGTGATTCTGGGCATTTTTTGCAATGCACTGGAGATCTTTTCATGTGGAAATCTATTCCCATTTCCTCCATTCTGTAAACCCACCCCTTCATTCAAATAAAGATGATtgcttg
>TU228688
AGGaggccagggccaaggaggccagggccaaggaggccagggccaaggaggccagggTGGCAGCCAGGGCCAGGGGGGTGGACAGGGTGGCAGCCGGGGAGGTAAATAAGTCTTTTATTGTTCTGAGGTTAGGGAAGTTGTGAAATGTGTCCAGGTATTTGGTCCAGCTTGTGATTCTGGGCATTTTTTGCAATGCACTGGAGATCTTTTCATGTGGAAATCTATTCCCATTTCCTCATTCTGTAAACCCACCCCTTCATTCAAATAAAGATGATTGcttga
>TU228689
GGCCAGGGCGGCCAGGGCCAGGGCGGCCAGGGCCAGGGCGGCCAGGGCCAGGGCGGCCAGGGCCAAGGCGGCCAGGGCCAAGGcggccagggccaaggaggccagggccaaggaggccagggccaaggaggccagggccaaggaggccagggccaaggaggccaggGCCAAGGAGGCCAGGGTGGCAGCCAGGGCCAGGGGGGTGGACAGGGTGGCAGCCGGGGAGGTAAATAAGTCTTTTATTGTTCTGAGGTTAGGGAAGTTGTGAAATGTGTCCAGGTATTTGGTCCAGCTAGTGATTCTGGGCATTTTTTGCAATGCACTGGAGATCTTTTCATGTGGAAATCTATTCCCATTTCCTCCATTCTGTAAACCCACCCCTTCATTCAAATAAAGATGATtgcttg
>TU228692
AGGaggccagggccaaggaggccagggccaaggaggccagggccaaggaggccagggTGGCGGCCAGGGCCAAGGCGGCCAGGGCCAAGGcggccagggccaaggaggccagggccaaggaggccaggGCCAAGGAGGCCAGGGTGGCAGCCAGGGCCAGGGGGGTGGACAGGGTGGCAGCCGGGGAGGTAAATAAGTCTTTTATTGTTCTGAGGTTAGGGAAGTTGTGAAATGTGTCCAGGTATTTGGTCCAGCTAGTGATTCTGGGCATTTTTTGCAATGCACTGGAGATCTTTTCATGTGGAAATCTATTCCCATTTCCTCCATTCTGTAAACCCACCCCTTCATTCAAATAAAGATGATtgcttg
>TU228693
AGGaggccagggccaaggaggccagggccaaggaggccagggccagggccaaggaggccagggccaaggaggccagggccaaggaggccagggccaaggaggccagggccaaggaggccaggGCCAAGGAGGCCAGGGTGGCAGCCAGGGCCAGGGGGGTGGACAGGGTGGCAGCCGGGGAGGTAAATAAGTCTTTTATTGTTCTGAGGTTAGGGAAGTTGTGAAATGTGTCCAGGTATTTGGTCCAGCTAGTGATTCTGGGCATTTTTTGCAATGCACTGGAGATCTTTTCATGTGGAAATCTATTCCCATTTCCTCCATTCTGTAAACCCACCCCTTCATTCAAATAAAGATGATtgcttg
>TU228694
ggccagggccaaggaggccagggccagggccaaggaggccagggccaaggaggccagggccaaggaggccagggccaaggaggccagggccaaggaggccagggccaaggaggccaggGCCAAGGAGGCCAGGGTGGCAGCCAGGGCCAGGGGGGTGGACAGGGTGGCAGCCGGGGAGGTAAATAAGTCTTTTATTGTTCTGAGGTTAGGGAAGTTGTGAAATGTGTCCAGGTATTTGGTCCAGCTAGTGATTCTGGGCATTTTTTGCAATGCACTGGAGATCTTTTCATGTGGAAATCTATTCCCATTTCCTCCATTCTGTAAACCCACCCCTTCATTCAAATAAAGATGATtgcttg
>XM_043225368.1
ttttttttgtcgcAAAAGCACATCtaacttttttggttttgtgtgAATTGCTGTCTGCGTCTAACACGCTActttggtgcttttttttttccacagagtTCACTGTAATCACAGGTCAGGATGAGCACTCGAGCGTACTGCTCGCTCATTGCAGTTTTATTGTGTCTCTGCAGATGTTTGAGCATAACCGATGCTACTCGAGGACGCTCCAAAGTGACTGGTTTCTGTCCGGCGAGGCTCACGGTTGTACCGTCCCGTCGAGGATGTTCTTCTGACAGAGACTGCTCCAGAGAACACATATGCTGTCGTTTTGATCGGGGACCTGTGTGTGTGCCGCCTGTTTCCACAAAACCAGGAGAGTGTCCACCCGCCAGAATGTGTGGAAGATCATGTACCAGCTCCTGTGAAAGTGACTCTTGCTGTCCAGGCAACGAGAAGTGCTGCAGCAATGGATGTGGACGTCACTGTACAGATCCATATATAGTGAAACCGGGTCAATGTCCCAGACCAACGAGGACTCGAGTGTGTGATGAAAACTGTTTCCATGATGGTCAATGTCCTGCCAGACAGAAGTGTTGCCCAACGACCTGTGGCCGTTCATGCAGTAAACCATTgggccaaggaggccagggcGGCCAggccaaggagGGTCagggccaaggaggccagggtcagggccaaggaggccaggaccaaggaggccagggccaaggaggccagggcCAAGGGGGTCAGGGTCagggccaaggaggccagggTCAGGGCGGCCAGGACCagggccaaggaggccagggccaaggaggccagggccaaggaggccagggccaggcccaggggccagggccaggccaagGGGGGGGTCAGggccagggccaaggaggccagggccagggccaaggaggccagggccaaggaggccagggccagggaggccagggccaaggaggccaggCCAAGGAGGCCAGGCCAAGGAGGCCAGGGTGGCAGCCAGGGCCAGGGGGGTGGACAGGGTGGCAGCCGGGGAGTGTCCTGCCAGACAGAAGTGTTGCCCAACCACCTGTGGCCGTTCATGCAGTAAACCATTTGGACAGGGAAGTGGCTACGATCACGAAAGGGGCCAGGGATGGGGTGATCAGGGAGGAGGCCAAGGTGGTGGACAGGGACGTGGGGGAGACCAAGGTGGGGGTGAGAGAGGTGGTCGGGGAGGTGAATAAGTCTTTTGGCCTTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU228687 False 422 lncRNA 0.62 4 2925345 2942568
TU228688 False 282 lncRNA 0.51 2 2925579 2932816
TU228689 False 407 lncRNA 0.61 4 2925345 2942568
TU228692 False 369 lncRNA 0.58 3 2925579 2942568
TU228693 False 363 lncRNA 0.57 3 2925579 2942568
TU228694 False 359 lncRNA 0.57 4 2925308 2942568
XM_043225368.1 True 1230 mRNA 0.59 7 2940038 2943806

Neighbor

gene id symbol gene type direction distance location
LOC122328848 LOC107709248,LOC107687290,LOC107558915 coding upstream 7760 2901814 ~ 2917548 (+)
cdh26.1 LOC107687291,LOC107709249,LOC107748449,LOC107565965,LOC107558905 coding upstream 25518 2885732 ~ 2899790 (+)
zgc:113423 LOC107687294,LOC107558912,LOC107717998 coding upstream 55428 2863843 ~ 2869880 (+)
tgm1 LOC107718009,LOC107558911,LOC107687295 coding upstream 90713 2826308 ~ 2834595 (+)
rabggta rabggta,LOC107680063,LOC107687297,LOC107565973 coding upstream 102230 2810635 ~ 2823078 (+)
LOC122329170 NA coding downstream 2206 2946012 ~ 2947855 (+)
LOC122328870 NA coding downstream 5184 2948990 ~ 2951628 (+)
LOC122329171 NA coding downstream 11303 2955109 ~ 2956917 (+)
LOC122328851 LOC107687290,LOC107709248,LOC107558915 coding downstream 21794 2965600 ~ 2976846 (+)
LOC122328866 LOC107709226,LOC107576631 coding downstream 39532 2983338 ~ 2989016 (+)
G154369 NA non-coding upstream 73860 2851024 ~ 2851448 (+)
G154368 NA non-coding upstream 80153 2844852 ~ 2845155 (+)
LOC122328886 LOC107748448,LOC107680059,LOC107565963 non-coding upstream 82286 2835863 ~ 2843022 (+)
G154365 NA non-coding upstream 127471 2797127 ~ 2797837 (+)
G154285 NA non-coding upstream 267623 2657374 ~ 2657685 (+)
G154425 NA non-coding downstream 3968 2947774 ~ 2957135 (+)
LOC122328882 NA non-coding downstream 67375 3011181 ~ 3021971 (+)
LOC122328883 NA non-coding downstream 105592 3049398 ~ 3051276 (+)
G154487 tmem106c,LOC107704621 non-coding downstream 168716 3112522 ~ 3113171 (+)
G154517 NA non-coding downstream 262676 3206482 ~ 3206688 (+)
prdm5 prdm5,LOC107698519,LOC107669703 other upstream 568581 2312722 ~ 2356727 (+)
LOC122328869 LOC107723021,LOC107694620,LOC107577481 other upstream 792475 2129998 ~ 2132833 (+)
LOC122328880 LOC107723010,LOC107683284,LOC107694619 other upstream 853909 2068668 ~ 2071399 (+)
snai1b LOC107694621,LOC107723015,LOC107549169,LOC107558792,LOC107738552,LOC107669687 other upstream 871333 2050032 ~ 2053975 (+)
G154108 plcg1 other upstream 960191 1964273 ~ 1965117 (+)
rbm10 LOC107709225,LOC107687301,LOC107704624,LOC107748436 other downstream 51363 2995169 ~ 3010017 (+)
mitfb LOC107704626,LOC107709243,LOC107748437,LOC108438070,LOC107687304,LOC107558923,LOC107709232 other downstream 116703 3060509 ~ 3097035 (+)
ube2t ube2t,LOC107746510,LOC107707375,LOC107673550 other downstream 750846 3694652 ~ 3697022 (+)
LOC122328459 g6pd,LOC107723128,LOC107697003,LOC107594489 other downstream 1873559 4817365 ~ 4835484 (+)
si:ch211-220i18.4 LOC107551506,LOC107666586,LOC107559855,LOC107681367,LOC107705652,LOC108275527,LOC107100285 other downstream 3648796 6592602 ~ 6598532 (+)

Expression


Co-expression Network