tspan2b (tspan2b,LOC107709234,LOC107696969,LOC107746340,LOC107566064,LOC107673514,LOC107554202)


Basic Information

Item Value
gene id tspan2b
gene name tspan2b,LOC107709234,LOC107696969,LOC107746340,LOC107566064,LOC107673514,LOC107554202
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 3502265 ~ 3518142 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU228997
TTGACAGAGCTCGTGCGGCGCGACAGCATCTCCGCCTTTCACGCCGCGAGCCGGACCGATCAGAAAGAAGACCCCGTCAGATCACACGTACGCCATGGGGAAGGTCGAAGGCGGGATGAAGTGCGTGAAATATCTCCTCTTCATGTTCAACTTTATATTCTGGttgATCGGCTCGCTGGTTCTGGCTGTAGGCCTCTGGCTCAGGCTTGATCCAAATACTGTGTCTCTTCTAGGAAAAGGCGGACCTGATACCTTCTTTATTGattattggcatgatcttcaGTATGGTCCTGTGCTGTGCCATCCGGAACAGCAGGGAGGTGATCTAACGCAGTCTTCCTCACCTGAACATGACCTTTCACCTTTGACACTTAACTTTTGCTGGACTTGCATATACAACTAGAACATTCCAACCTAGTTCAAGGTATTCTTCTGCCACTCAGGAACCGAGAACAAACTCCGCTTTCATAATCCTGTACACCTCAACCAACCAATGGTTTAGTCCGGTCCTAGTTGTTTAAACTCAGATTGCTGGAtcgtctttatttttaatgcctGCTGGTTGGGTGCAGAGCTGGATCTTCCAATTGCGACAAACACGAGTtcgttttaatataatttagatttCGACTTCTGGTGCACACTGATCTGCTCTTTCAGAGAGTTTGCACATTTATGTATTGATGCTATTCCAGGCTGTTGCTGCGTTGCTTCGCATGCCAgataaaaatattgtgtaatgTGATGCCACTGGTTCTGTGGCAAACCCGCAGCCGCTGGGAATGGCGGAAAGAGGACCCACGGATGCTTTTCGCTTTACGTTTGTACACAAACAAGGTGGTCTTCTACGTCACCGacacatgcaaacaaatgcTTACCGAAAGATGCACACATGCGCACAAAACCCACATGTTGGTGATCTTCAGAAGAACCTTTGTGTCCATACCATCCAGTGAGccctcttaaagggacagctcacccaaaaatcatCTTTCTCacccatgttgttccaatcctgactttataactcacaattgcgagtttatatgaagcaatactgagaaaaaagtcagaattgccgGTTTACAGCGGGTCTTGCGATTCTGACTTCATTTCTCACAGTTGCGAGTTTGTTTCGCAATTCAGAGTAAGGATTGCACGTTTtgagaaaaaagtcaaacttgTGAAATGGAAGGCATAATTGTGATATTgtgcatttactttattttattctggctttaaatacaaaagttattttgaagaatgttggtaaccaaacattGGCTTCCACAGTATGgagaaaaatactatggaagtcaatgcaGGTCAATGGTGTCAACTATAAGGTTACCGACATTCCTCGAAATGCAGTCACAACTCGAGGGTGATTTTCAgctgaactgtccctttaagtctTGCTTGCCCTCCGAATCCCTCCACGCAGTTTCCACTTCAGGAGAGGCACACTAACACATATTCGCATATGCATTTGAACTCACGTCAACACCGATGATCGGGTTTCTGTTATGCAATAACCTGGCTCAACTGAAGCCTCCACTGATAACGGTACAGCCTGGTATTCTCTGGCACGATGGAGCCAAATCTTCTCATTCTCAAGCTGGATTTTATGGTGTAGAGTTGCCTGGTTATTTTACACACGCAGCTAAGTAAAGACCCTGAAGATCCACTGACACTGTCTTGTGCCTTCTACCGTCTATAATTGGTTGCATCCAACCATCTGCGCTGTGAATATGAAACGGATCAGACATGACCGACATCTGAATCACTTGCTTAATTCATTCAACAAACAAGGATGGTTCAAGCAGTGTCCTTAAGTGGAGTTATTAGAAGAAGAACTAGTTTCGCTTACTTTTAAGgcgtccttgttacagtgtaattgtacatttaaGTACTTTTAATATTAACGAACTGCAtgtttgggtaggtttaggctTACTTGCAtgaaatgatgcataattattatttttttattataatgggAAGTACGTGTAACATGTAACAAGAACAACTTAAAGTAAAGTGTGACTAAAGAGTTGTTATTATATCTATATAAGATGCATGAGTAAGTTATAAATGCATTGGTGGACTAATTGGGAGACTGTCCATGTGAATACCTTTGTACTCACGTTCATTTGCTTCGTTTTTTTAGTTGATTTAGCGATTTTGTCGGATGGGACGGTGAAGTAACGAGAGAGGGAAAAGGGATCACTCAAAGCACATccgtgccattttttttttgaggtttaAATTGGATTTAGTTTCTCCGATTTTCAATGCGGTCTGAACCCCACATTTTTAACCTAAAATTTTGGtactggacaaaaaaaaaagtcttcaacTTCAAGTGATCGAATCCAGGTTTCTGAAATGAACACTGAAGTATTTAATCGCATATAGAAACTGGCTTAGTCCAGATGTTCTCGACACATTGtcaaaaatgtcttgttttatcAAAGCATCGATTGCATGTCAAAGAGAAGTCACTTACAAGccaagcagctttctgtttgtCTCACCCAAACTTGAAATGACCGCATTTCTCCTGTAAAATGTTCCTAAGCGACGGTAAATGTGAGCGTATCTTCAGTCTTACGTTCTGTGTACATATCTGTGAGAGTTTCACGAGTTGTCATAGTAGTTGTAGCGATCGTGATCATCTGTCTTGTGCGGTTAATGTGTATAGAGGCAGTTTTGCCCAGTGTACAGCCGTTTTTGTTTCACATCATGCATTTGAAGGtgcctttgtttttattcaaccCGAAAAAACAACGTAGTATTCGGTTGAACGTTGTCGTTGTTTTAAGAGAAGGGATCGGAAAAGGGACgaaatctctttttttgttatttataatagGGCAGCCGTTGGTTGGTCAGATGTATTTCTGCTGGTGCGTCACTGCTGAAGTTCCTCAAGATGAAATGGCATTAGAGTAGCGATTAGGATACGTCGTAGTCGACGCTAACGGAGTGTAACACGTGAAACAAGTGTTCCGTTCGCATTCAATGTTCAAGTAGATCCGTCCTCGTGCCCAAAAGCAACCCTGTTCAGGCTGTACGATAACTAGTACGGAGCATGTAGCGCGGCTTTCGAGTAGAGGCTCTGTCGTAAACTATGAGTGTGTTATTCCTACACTTTGTGTAAGCAatgtcaagattttttttttgtactgtaaacAGAACACTGCAGCCTTTCGATGTTAGTGCTCacaatttgtgtgttttaatttatttttctggaGAGCAAGTTCAAAACAGCATTCGGGTTTCTCAGGAACACTGCAGCACGAGAACAAATAAACTTGTTTG
>XM_043225298.1
gccgccgccgctggTAGCGCAGATGTTGACAGAGCTCGTGCGGCGCGACAGCATCTCCGCCTTTCACGCCGCGAGCCGGACCGATCAGAAAGAAGACCCCGTCAGATCACACGTACGCCATGGGGAAGGTCGAAGGCGGGATGAAGTGCGTGAAATATCTCCTCTTCATGTTCAACTTTATATTCTGGttgATCGGCTCGCTGGTTCTGGCTGTAGGCCTCTGGCTCAGGCTTGATCCAAATACTGTGTCTCTTCTAGGAAAAGGCGGACCTGATACCTTCTTTATTGGGGTCTATATCCTGATTGCGGCTGGGGGTCTGGTGATGCTGGTGGGCTTCTTCGGCTGCTGTGGAGCCGTGAGGGAGTCTCAGTGCCTTCTGGGATTGTTTTTCGCCTGTCTTCTGGTCATCTTTGGAGCAGAAGTCGCTGCAGGAGTGTTTGGGTTCCTCAACAAAGACGAGatcattaaggaaataaaacaattctaTGACGAATCGGCAAGAAACAATAGCAGTAACACCACCGTCAAGTCCTACCACAGCATTctaAACTGCTGCGGCTCGAGCAGCGTGTGTCTGGACGCGGCGTCAAACCAGACGTGTCATGAGGCCATTGAAGAGTTTTTCAACAGTAAGCTCTTCATCGTGGGTTATGTTGGGATCGGAATCGCGGGAGTCATGattattggcatgatcttcaGTATGGTCCTGTGCTGTGCCATCCGGAACAGCAGGGAGGTGATCTAACGCAGTCTTCCTCACCTGAACATGACCTTTCACCTTTGACACTTAACTTTTGCTGGACTTGCATATACAACTAGAACATTCCAACCTAGTTCAAGGTATTCTTCTGCCACTCAGGAACCGAGAACAAACTCCGCTTTCATAATCCTGTACACCTCAACCAACCAATGGTTTAGTCCGGTCCTAGTTGTTTAAACTCAGATTGCTGGAtcgtctttatttttaatgcctGCTGGTTGGGTGCAGAGCTGGATCTTCCAATTGCGACAAACACGAGTtcgttttaatataatttagatttCGACTTCTGGTGCACACTGATCTGCTCTTTCAGAGAGTTTGCACATTTATGTATTGATGCTATTCCAGGCTGTTGCTGCGTTGCTTCGCATGCCAgataaaaatattgtgtaatgTGATGCCACTGGTTCTGTGGCAAACCCGCAGCCGCTGGGAATGGCGGAAAGAGGACCCACGGATGCTTTTCGCTTTACGTTTGTACACAAACAAGGTGGTCTTCTACGTCACCGacacatgcaaacaaatgcTTACCGAAAGATGCACACATGCGCACAAAACCCACATGTTGGTGATCTTCAGAAGAACCTTTGTGTCCATACCATCCAGTGAGccctcttaaagggacagctcacccaaaaatcatCTTTCTCacccatgttgttccaatcctgactttataactcacaattgcgagtttatatgaagcaatactgagaaaaaagtcagaattgccgGTTTACAGCGGGTCTTGCGATTCTGACTTCATTTCTCACAGTTGCGAGTTTGTTTCGCAATTCAGAGTAAGGATTGCACGTTTtgagaaaaaagtcaaacttgTGAAATGGAAGGCATAATTGTGATATTgtgcatttactttattttattctggctttaaatacaaaagttattttgaagaatgttggtaaccaaacattGGCTTCCACAGTATGgagaaaaatactatggaagtcaatgcaGGTCAATGGTGTCAACTATAAGGTTACCGACATTCCTCGAAATGCAGTCACAACTCGAGGGTGATTTTCAgctgaactgtccctttaagtctTGCTTGCCCTCCGAATCCCTCCACGCAGTTTCCACTTCAGGAGAGGCACACTAACACATATTCGCATATGCATTTGAACTCACGTCAACACCGATGATCGGGTTTCTGTTATGCAATAACCTGGCTCAACTGAAGCCTCCACTGATAACGGTACAGCCTGGTATTCTCTGGCACGATGGAGCCAAATCTTCTCATTCTCAAGCTGGATTTTATGGTGTAGAGTTGCCTGGTTATTTTACACACGCAGCTAAGTAAAGACCCTGAAGATCCACTGACACTGTCTTGTGCCTTCTACCGTCTATAATTGGTTGCATCCAACCATCTGCGCTGTGAATATGAAACGGATCAGACATGACCGACATCTGAATCACTTGCTTAATTCATTCAACAAACAAGGATGGTTCAAGCAGTGTCCTTAAGTGGAGTTATTAGAAGAAGAACTAGTTTCGCTTACTTTTAAGgcgtccttgttacagtgtaattgtacatttaaGTACTTTTAATATTAACGAACTGCAtgtttgggtaggtttaggctTACTTGCAtgaaatgatgcataattattatttttttattataatgggAAGTACGTGTAACATGTAACAAGAACAACTTAAAGTAAAGTGTGACTAAAGAGTTGTTATTATATCTATATAAGATGCATGAGTAAGTTATAAATGCATTGGTGGACTAATTGGGAGACTGTCCATGTGAATACCTTTGTACTCACGTTCATTTGCTTCGTTTTTTTAGTTGATTTAGCGATTTTGTCGGATGGGACGGTGAAGTAACGAGAGAGGGAAAAGGGATCACTCAAAGCACATccgtgccattttttttttgaggtttaAATTGGATTTAGTTTCTCCGATTTTCAATGCGGTCTGAACCCCACATTTTTAACCTAAAATTTTGGtactggacaaaaaaaaaagtcttcaacTTCAAGTGATCGAATCCAGGTTTCTGAAATGAACACTGAAGTATTTAATCGCATATAGAAACTGGCTTAGTCCAGATGTTCTCGACACATTGtcaaaaatgtcttgttttatcAAAGCATCGATTGCATGTCAAAGAGAAGTCACTTACAAGccaagcagctttctgtttgtCTCACCCAAACTTGAAATGACCGCATTTCTCCTGTAAAATGTTCCTAAGCGACGGTAAATGTGAGCGTATCTTCAGTCTTACGTTCTGTGTACATATCTGTGAGAGTTTCACGAGTTGTCATAGTAGTTGTAGCGATCGTGATCATCTGTCTTGTGCGGTTAATGTGTATAGAGGCAGTTTTGCCCAGTGTACAGCCGTTTTTGTTTCACATCATGCATTTGAAGGtgcctttgtttttattcaaccCGAAAAAACAACGTAGTATTCGGTTGAACGTTGTCGTTGTTTTAAGAGAAGGGATCGGAAAAGGGACgaaatctctttttttgttatttataatagGGCAGCCGTTGGTTGGTCAGATGTATTTCTGCTGGTGCGTCACTGCTGAAGTTCCTCAAGATGAAATGGCATTAGAGTAGCGATTAGGATACGTCGTAGTCGACGCTAACGGAGTGTAACACGTGAAACAAGTGTTCCGTTCGCATTCAATGTTCAAGTAGATCCGTCCTCGTGCCCAAAAGCAACCCTGTTCAGGCTGTACGATAACTAGTACGGAGCATGTAGCGCGGCTTTCGAGTAGAGGCTCTGTCGTAAACTATGAGTGTGTTATTCCTACACTTTGTGTAAGCAatgtcaagattttttttttgtactgtaaacAGAACACTGCAGCCTTTCGATGTTAGTGCTCacaatttgtgtgttttaatttatttttctggaGAGCAAGTTCAAAACAGCATTCGGGTTTCTCAGGAACACTGCAGCACGAGAACAAATAAACTTGTTTGAAGTTTCTGA

Function

symbol description
tspan2b Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TSPAN2 (tetraspanin 2).

NR:

description
PREDICTED: CD9 antigen-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06508 CD81, TAPA1, TSPAN28; CD81 antigen

RNA

RNA id representative length rna type GC content exon number start site end site
TU228997 False 3327 lncRNA 0.42 3 3502275 3518117
XM_043225298.1 True 3754 mRNA 0.43 8 3502265 3518142

Neighbor

gene id symbol gene type direction distance location
uhrf1bp1 uhrf1bp1,LOC107697035,LOC107672988,LOC107566066,LOC107554204 coding downstream 28811 3447559 ~ 3473454 (-)
LOC122328834 anks1a coding downstream 72212 3352961 ~ 3430053 (-)
LOC122329174 NA coding downstream 203310 3288123 ~ 3298955 (-)
hdac7a LOC107704627,LOC107709222,LOC107752451 coding downstream 295854 3142283 ~ 3206411 (-)
LOC122328862 LOC107709224,LOC107558908,LOC107704618,LOC107696950 coding downstream 374043 3120862 ~ 3128222 (-)
ngfa ngfa,LOC107709229,LOC107554210,LOC107673522,LOC107566067,LOC107696968,LOC107735269 coding upstream 11391 3529533 ~ 3554513 (-)
pnpla1 LOC107696946,LOC107559157,LOC107746525 coding upstream 156323 3674465 ~ 3681959 (-)
etv7 LOC107559164,LOC107696965,LOC107746509,LOC107673543,LOC107707376,LOC107598153 coding upstream 163950 3682092 ~ 3688198 (-)
LOC122329314 lgr6,LOC107746507,LOC107559174,LOC107697027,LOC107707372,LOC107673397 coding upstream 183464 3701606 ~ 3770863 (-)
tnnt2a tnnt2a,LOC107559170,LOC107696942 coding upstream 363878 3882020 ~ 3893676 (-)
G154525 NA non-coding downstream 489084 3011419 ~ 3013181 (-)
G154519 NA non-coding downstream 492787 3006483 ~ 3009478 (-)
G154520 LOC107709225,LOC107565972 non-coding downstream 504301 2996765 ~ 2997964 (-)
G154443 NA non-coding downstream 551607 2925204 ~ 2950658 (-)
G154444 NA non-coding downstream 570028 2925010 ~ 2932237 (-)
G154663 NA non-coding upstream 114217 3632359 ~ 3633333 (-)
G154671 NA non-coding upstream 137144 3655286 ~ 3655596 (-)
G154672 NA non-coding upstream 138146 3656288 ~ 3656543 (-)
G154684 LOC107746508,LOC107696966,LOC107559163 non-coding upstream 154537 3672679 ~ 3673581 (-)
G154687 LOC107559166,LOC107559158,LOC107746523,LOC107696944,LOC107696945 non-coding upstream 174795 3692937 ~ 3693265 (-)
LOC122328836 LOC107566068 other downstream 56301 3434124 ~ 3445964 (-)
G154446 NA other downstream 544993 2925048 ~ 2957272 (-)
G154445 NA other downstream 550637 2925305 ~ 2951628 (-)
si:zfos-905g2.1 si:zfos-905g2.1 other downstream 627507 2869618 ~ 2874758 (-)
LOC122328838 LOC107680059,LOC107748448,LOC107565963 other downstream 663218 2769482 ~ 2839047 (-)
lad1 LOC107746516,LOC107696941,LOC107559160 other upstream 376824 3894966 ~ 3905892 (-)
LOC122329268 LOC107707377,LOC107673205,LOC107746501,LOC107697018,LOC107601321,LOC107598138,LOC108443130,LOC103026736,LOC106572423 other upstream 655772 4173914 ~ 4194998 (-)
LOC122329181 LOC107601337,LOC107697001,LOC107723119 other upstream 1309336 4827478 ~ 4834520 (-)
G155227 si:zfos-452g4.1,LOC107724183,LOC107663057,LOC107696954,LOC107551515,LOC107705659,LOC107593949 other upstream 1936275 5454417 ~ 5455047 (-)
LOC122329286 nav1b,LOC107666060,LOC107595432,LOC107740254,LOC107696445,LOC107587625 other upstream 1959699 5477841 ~ 5479822 (-)

Expression


Co-expression Network