G154684 (LOC107746508,LOC107696966,LOC107559163)


Basic Information

Item Value
gene id G154684
gene name LOC107746508,LOC107696966,LOC107559163
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 3672679 ~ 3673581 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU229056
ggtATTcaaatttaatagtttttttaatacattttaaaatcatcataTTACCTTTCAGAAGTCATTAGAATATGCTAAtctggtgtaaaaaaaaaattcacagttTTAGTCTTATCGGGTTGTATATTTTACAGTCGGTTACTGTataaattttacagtaaaaagtgACTAACTTTGGCGTATTCACAAAAGCAGCTAGGATTATTACAGTCCCCCCTCTTCCCTTCACAGTCAGTCTGTTTCACTTGTACTCTGTTGTTCCAAGTCTTCAGGCACCTACTGTCTGTGGGCCGCGCACTTTAGCGTGAAGGAGTCCTGAAGGTACTGGTAACCGAACCCCATGATTCGGCCGACCGCCTGGCTGCACAGTCCAGCCACTTTAGCGGTGAAGTCCAGGGTGAAGGCCAGCCTGACCAGCTCGGCAGAGGCGTCTGTGGTCTGAGGAAGAGGACTGGGGATCTGGGCTATGTAGCGGTCGGCGAGCTGCTGGAAGGAGATGTAAGACAGCTTCTGGAGGAAGTCTTGGACACTCTTGTTCACGT

Function

NR:

description
PREDICTED: uncharacterized protein LOC107746508

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU229056 True 542 lncRNA 0.45 2 3672679 3673581

Neighbor

gene id symbol gene type direction distance location
ngfa ngfa,LOC107709229,LOC107554210,LOC107673522,LOC107566067,LOC107696968,LOC107735269 coding downstream 118166 3529533 ~ 3554513 (-)
uhrf1bp1 uhrf1bp1,LOC107697035,LOC107672988,LOC107566066,LOC107554204 coding downstream 199225 3447559 ~ 3473454 (-)
LOC122328834 anks1a coding downstream 242626 3352961 ~ 3430053 (-)
LOC122329174 NA coding downstream 373724 3288123 ~ 3298955 (-)
hdac7a LOC107704627,LOC107709222,LOC107752451 coding downstream 466268 3142283 ~ 3206411 (-)
pnpla1 LOC107696946,LOC107559157,LOC107746525 coding upstream 884 3674465 ~ 3681959 (-)
etv7 LOC107559164,LOC107696965,LOC107746509,LOC107673543,LOC107707376,LOC107598153 coding upstream 8511 3682092 ~ 3688198 (-)
LOC122329314 lgr6,LOC107746507,LOC107559174,LOC107697027,LOC107707372,LOC107673397 coding upstream 28025 3701606 ~ 3770863 (-)
tnnt2a tnnt2a,LOC107559170,LOC107696942 coding upstream 208439 3882020 ~ 3893676 (-)
tnni1a tnni1a,LOC107598157,LOC107746527,LOC107673122,LOC107696961,LOC103149619 coding upstream 233681 3907262 ~ 3913491 (-)
G154672 NA non-coding downstream 16136 3656288 ~ 3656543 (-)
G154671 NA non-coding downstream 17083 3655286 ~ 3655596 (-)
G154663 NA non-coding downstream 39346 3632359 ~ 3633333 (-)
G154525 NA non-coding downstream 659498 3011419 ~ 3013181 (-)
G154519 NA non-coding downstream 663201 3006483 ~ 3009478 (-)
G154687 LOC107559166,LOC107559158,LOC107746523,LOC107696944,LOC107696945 non-coding upstream 19356 3692937 ~ 3693265 (-)
G154701 NA non-coding upstream 123895 3797476 ~ 3798969 (-)
G154703 NA non-coding upstream 132962 3806543 ~ 3806901 (-)
G154708 NA non-coding upstream 153246 3826827 ~ 3827190 (-)
G154720 NA non-coding upstream 164081 3837662 ~ 3838133 (-)
tspan2b tspan2b,LOC107709234,LOC107696969,LOC107746340,LOC107566064,LOC107673514,LOC107554202 other downstream 154537 3502265 ~ 3518142 (-)
LOC122328836 LOC107566068 other downstream 226715 3434124 ~ 3445964 (-)
G154446 NA other downstream 715407 2925048 ~ 2957272 (-)
G154445 NA other downstream 721051 2925305 ~ 2951628 (-)
si:zfos-905g2.1 si:zfos-905g2.1 other downstream 797921 2869618 ~ 2874758 (-)
lad1 LOC107746516,LOC107696941,LOC107559160 other upstream 221385 3894966 ~ 3905892 (-)
LOC122329268 LOC107707377,LOC107673205,LOC107746501,LOC107697018,LOC107601321,LOC107598138,LOC108443130,LOC103026736,LOC106572423 other upstream 500333 4173914 ~ 4194998 (-)
LOC122329181 LOC107601337,LOC107697001,LOC107723119 other upstream 1153897 4827478 ~ 4834520 (-)
G155227 si:zfos-452g4.1,LOC107724183,LOC107663057,LOC107696954,LOC107551515,LOC107705659,LOC107593949 other upstream 1780836 5454417 ~ 5455047 (-)
LOC122329286 nav1b,LOC107666060,LOC107595432,LOC107740254,LOC107696445,LOC107587625 other upstream 1804260 5477841 ~ 5479822 (-)

Expression


Co-expression Network