G15393


Basic Information

Item Value
gene id G15393
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4720675 ~ 4720905 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU17211
GGGGTGTTCCTCAGGGTGGGACCTTCAGCTCCTTAGCAAATAGCTTGTCAGTCCTTGAGCCTGGAGCGAAGGAGGGGTTTGATATAAAGGTACAGTCTGTGTCATCTGTGTTTGGACATGCTCAACGATTCCTCAGACTTTCCCTTCTTCACAAGATTAATGTCTTCTGGGACATTTATACTGCCATTGGACTTTAAGGATTTTTACACATGACAGACAGCGTACAAAAAGGTTCCAAAGAACACTCCACTTTCCGAGCATTTGGTTCTGTCATATTTGCACATAAAAGCTGACCATGACCACCGTAAATGCCCCTGTGTGTCTGCTCGCTCGGAATGAGTTTTATCGGAGTATCTACCCAACAGACAAAATGAAGGCAGTTAATAGTCTTTCTGATAACTTAATGGAACCAAAGCAAAGACAAGTGACTGTCTGGTTGACCAAATCCAAACTCCAAGATTTCTCAGGACCTATGAACAATCGCTGGACAATAAATGTGGTTTCAAGGAGCCAGACATCCAGCGAAACCTCTTCCAAACGTCCTGCTGATTGTGTGGTCAAGTAGATGCCTGCACAAAAATAGTGCTGGAAAACTGAAAAGTGTGCTTCTCTACAGACACAATATTTAAAATTAAATATGCTGCTCCGGTGATTAATACCTAGATTTTTTTGCATTGTCTACAGATCTAGAAAACTTGCATGTTAGAAAAGGAAAAATTAGTTTGTTTATATGCTACCATTCAGAAGTTTGTGGTTAATAAGTCCCTTATGCTCACCAAGGCTGCATTTATTTGATAAAAATACAGTAAAAATTGTGAAATAGTATTACAATTTAAAATAACCATTTTTTATTTGAATATATTTTAAAATGTAATTTATTCCTGTGATGCAAAGCTGAATTTTCAGCATCATTACGCCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTCTAATATGCTGATTTGATGCTCAATTAAACATTTCTTATTATTATCAGCGTTAAAAACAGTTAGAAAGATTGTTTTGAAATTGAAATCTTTTGTAACATTATAAATGTCTTTACAGTCAATCAATTTTAAGCATACTTGCTGAATAAAAAACCCTTTTTTTTCTTTAAACAAATGTCTTACTGACCCCAAACTTTATACTCTACTGTAATATCCATTTAGTCATGTATTCCATTTACTCTGCTTACGTTACACAAAGCATAGGCATTTTTATTTTATATTATTCTATTTATTTATTTACTTATTTTGCATGCGTATTAGCTGGACCAACCTGCAAATATGACGTGATTTGAGATAAAGAATAATTAATTTGTTCTTAGTTTTGGAGATCTTGCTCTTTCATCATTGAAATACATAGGAACTGTATCTATTGCCTAAACAGAAAATAGCCAATATGCAATTGAGTGAACTGATTTGTCTTTAATGGGTATCCATCTATTCTGCACTAAATAAAAAGTAAATTAAATTTATTTTTATCTTCCCAATAAACTACCAATCACAGCACCTGTCACAATCTCTTAGTTGGGACCTGTTGCTGCGAACAAAGGAGAAATGATGCCTGAAAAAGAACAGAGTCAGCATGCCACAAAGAGGCTTTTCCATGTATCTAGCCAACCATCAGAACTTACTGACCTGGAAAATCCATGTACACATGCAAACAAAGCTGTACAACGTCATCTCTACCAAGCAATTTTCCATATTCACTGTTTGGTCTACCACCCACACTGCTTATTTTGAAGTCCACAGGCACTCTGTCCTATTCTTTTTGGCTTACATAAACCATGTTCAAGTATGAAGTAGATGTTTTCTATTCAGAAAGCAATAGTTTAGTAAAATGTCTTTAAAATGCTTTATTTTCTACTCAAAAGCACTTCAAACCTATTTTTAGTTCCTGGACCTGCAGCACACCCTGTTCAAAAGGATACTGAGCTC
>TU17212
CTGGAGCGAAGGAGGGGTTTGATATAAAGGTACAGTCTGTGTCATCTGTGTTTGGACATGCTCAACGATTCCTCAGACTTTCCCTTCTTCACAAGATTAATGTCTTCTGGGACATTTATACTGCCATTGGACTTTAAGGATTTTTACACATGACAGACAGCGTACAAAAAGGTTCCAAAGAACACTCCACTTTCCGAGCATTTGGTTCTGTCATATTTGCACATAAAAGCTGACCATGACCACCGTAAATGCCCCTGTGTGTCTGCTCGCTCGGAATGAGTTTTATCGGAGTATCTACCCAACAGACAAAATGAAGGCAGTTAATAGTCTTTCTGATAACTTAATGGAACCAAAGCAAAGACAAGTGACTGTCTGGTTGACCAAATCCAAACTCCAAGATTTCTCAGGACCTATGAACAATCGCTGGACAATAAATGTGGTTTCAAGGAGCCAGACATCCAGCGAAACCTCTTCCAAACGTCCTGCTGATTGTGTGGTCAAGTAGATGCCTGCACAAAAATAGTGCTGGAAAACTGAAAAGTGTGCTTCTCTACAGACACAATATTTAAAATTAAATATGCTGCTCCGGTGATTAATACCTAGATTTTTTTGCATTGTCTACAGATCTAGAAAACTTGCATGTTAGAAAAGGAAAAATTAGTTTGTTTATATGCTACCATTCAGAAGTTTGTGGTTAATAAGTCCCTTATGCTCACCAAGGCTGCATTTATTTGATAAAAATACAGTAAAAATTGTGAAATAGTATTACAATTTAAAATAACCATTTTTTATTTGAATATATTTTAAAATGTAATTTATTCCTGTGATGCAAAGCTGAATTTTCAGCATCATTACGCCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTCTAATATGCTGATTTGATGCTCAATTAAACATTTCTTATTATTATCAGCGTTAAAAACAGTTAGAAAGATTGTTTTGAAATTGAAATCTTTTGTAACATTATAAATGTCTTTACAGTCAATCAATTTTAAGCATACTTGCTGAATAAAAAACCCTTTTTTTTCTTTAAACAAATGTCTTACTGACCCCAAACTTTATACTCTACTGTAATATCCATTTAGTCATGTATTCCATTTACTCTGCTTACGTTACACAAAGCATAGGCATTTTTATTTTATATTATTCTATTTATTTATTTACTTATTTTGCATGCGTATTAGCTGGACCAACCTGCAAATATGACGTGATTTGAGATAAAGAATAATTAATTTGTTCTTAGTTTTGGAGATCTTGCTCTTTCATCATTGAAATACATAGGAACTGTATCTATTGCCTAAACAGAAAATAGCCAATATGCAATTGAGTGAACTGATTTGTCTTTAATGGGTATCCATCTATTCTGCACTAAATAAAAAGTAAATTAAATTTATTTTTATCTTCCCAATAAACTACCAATCACAGCACCTGTCACAATCTCTTAGTTGGGACCTGTTGCTGCGAACAAAGGAGAAATGATGCCTGAAAAAGAACAGAGTCAGCATGCCACAAAGAGGCTTTTCCATGTATCTAGCCAACCATCAGAACTTACTGACCTGGAAAATCCATGTACACATGCAAACAAAGCTGTACAACGTCATCTCTACCAAGCAATTTTCCATATTCACTGTTTGGTCTACCACCCACACTGCTTATTTTGAAGTCCACAGGCACTCTGTCCTATTCTTTTTGGCTTACATAAACCATGTTCAAGTATGAAGTAGATGTTTTCTATTCAGAAAGCAATAGTTTAGTAAAATGTCTTTAAAATGCTTTATTTTCTACTCAAAAGCACTTCAAACCTATTTTTAGTTCCTGGACCTGCAGCACACCCTGTTCAAAAGGATACTGAGCTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU17211 False 231 lncRNA 0.36 1 4720675 4720905
TU17212 True 171 lncRNA 0.48 1 4720735 4720905

Expression


Co-expression Network