G15395


Basic Information

Item Value
gene id G15395
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4753717 ~ 4758419 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU17216
CCTTTTACTTTAATACATACAACTTTTCTTACTTTCACTTAAATGTTTTTGGCTAGATATTTTAACTTTTAATTGAATTAAGATTCCTTTTGTTACATCGCTGCAAGTGTAAAAAGCAACATTAACATTTTATTTTGCAGATCATCATTGCCTTTGCACAAACACACAAACACCACAGATACTTTTTTTTAGCTTCCTTCACATTTAATTTACAGCTGTTCAGACCAATTATCCATGTTACGTCTCTGACACAGTATATTCATGCTACAACAATTTCAGCTGATTTGATCCAGAATGCGCAAAACAATTCAGCCATTCTGTACAATATTGGCTTACACCTACTGAACTATGTAATTTATTAAAAACATAGGAAAATAATAAATAAAATATTGTTTCTCATCACCATGTTTACACTATTTCCTTCATTTATAACATGATTCTGTTTAGGTGTTGCACTCAGACACAAGGCTCCATTCGTTCTCATATTCTTAGACTGGAAGCAACAGGATCAATGTTGGATCAATGTTTTTTCAATTATGATCATGAAAAAAAAATACAAATAATTGGAAAGGAAAACTGGGATAACTGACATCAGTAGCTGTGTTACAGTGGAGCTTGTGTTGAGAAATAATATTTTGCAAATAAAAAGCGTTACACATTGTGAACAGTTCAGTTTTAGAAATGTTTAGAAACATGATCACTAATAATCTGCCTAATGATTCAGACATGAATTAAATACAAAAAACATATAACTATGAGATACATGTAGACACCTATGAAATATCCACAATGTGAACCTAAACAAATAAAACATACACATTTGGGGTAAATTACACAAGTTTTCTGCACATCCTCTTTTAAGTACATGTAAATGAATGTATGCAGACACATTCAAAAACACATTCCCAAACAGTGACAGATATACAGCTTAAAGAAATGACATATTTGAACACAGTACATAGATGGTGGTACAGTGATTAAATTCAGAGCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACACACACACACACACACACACACACATATATGTAGTGTCTAAAACAGAAATAAGGATTTCCTACTTTAAAATCTGTATGCTATGGAAGCTTGTTTCTGCCACTGAATTAAAAAAAAAAAAAAAAGGTAATTGCCACTTTTTAACTCACAATTCTTTTTTTTTTTTTTAGCATTTTTCTAGCATCAACTGCGAGATTTGACATGTAAACTCACAATTGCAAGAATTGACTTTATAATCAGCAATTGTGAGTTAATATCTCACAAAAAAAGGCGGGATATAATCTCGCAATTGTGAGAAAAAAAGTCAGAAATGTGCGATATGAACTCTCAATTCCATGATGAAAAACAAGCTTCCATAGTATGCTTATGTTCACTTCTATCAAAAATAAAATGCATGCATTCAGGGAGATAAAAGAAAAGGGAAGAAAAAAGGAGTTTGCAAGAGTCAGGGTTCCCAAAACATCTGACCATGACAAATGATTTTTCCATGACCTTTCCATTCACCCATGATTACTAGATAAGGATTTGTAAAATCCTGCTTAGGATTGTAGCTCATGAGCAATTTCTAGCCAATAAAATATTTTAGGGCTGAGCAAAGCTAGAAAATGTATAGAGAATGGACTTTTTTTGTTAATTTCCAAGTCATAAATTTAAACTTCCCTGATATTTCCAGGTTTTCCATGAATGTGGGAACCCTGAATCGTGTATGAATGACATGATCAAAACCAGCAAGCATGAACTATTATAGCCTGAAGAATACAGATCACAGAGTTATATATATATATATATATATATATATATATATATATAGGCATAATAACAGTAATAATACTGTTAATGTGTATTAACTACAGTAAAATATTATGTTGACCTGATTACATTAAACCAGGCACTAGGGAACAAGATCAAATTATGGGTACAATTACAGCCAAAATGTATGCAGATGAATCCCTTTACCCACAATCCTCCTGTGCTTGAATTGAATGTCTGTCTTCTGAAACCACAAACCTGAGAAATGCAAACACTAATGCTAGTGCAACCCTTTAACTTAAAGCCTCAAAAGGGATAGCTCACCCAAAAAAAAAAAATAATAATTTTTTTTCAATTGACTTCCATAGTATTTTCATACTATGGAAGTCAATGGGGACCAGAACTTGTTTGGTTACCTACATTCTTCAAAATATCTTTTATGTTCAGCAGAAGAAAGAAACTCATACAGGTTCAGAACAATTTGCGGGCGAGTAAATGATGGCAATTTTTATTTTTTGGGTGAACTATCCCTTTAAGAAAACAGATGGAAGTAACCTGCACAAGAATAAATAACCTGGTAGAGTCTCAGTATGTATCTGACAATCCCAATCTCCTGTTCCAGTGACCGACCAAACACACACACACACACACACACACACACACACACACACACACACACACACACACACAAATCGAGCAGAGCTAAGCACTGCATGATTATACTTGACAGTACATGCCCACCGGATGCCATTAACACGAGACGTCTCACATAAACATACACAGCATGACACAGCAATGTTTCCTCAACCGTGTCCTCAGTGACTACACTACAGTTTTCCTGTTTAAAAAATATAAATGTATGTGTACTAAAACTACTGAAAACCATTTCCTGTTGATATAACGAAACACTTGAAATTTTAATCTGAAGGAGGTCAATAACTTTTGAAAAGTTTGGGGTCAGTAAGATTTTTTAATGTTTTTAAAAGAGGTCTCTTCCACTCACCAAGGCTGCATTTCTTTGATTAAAAATGCAGAAAAAATGTGAAATATTATTACAAAGTAAAACAACTGTTTTCTGTTTTTATATATTTTTAAATGTAATTTATTCCTGTGATGCAAAGCTGAATTTTCAGCATCATTAGTGTCACATGATCCTTCAGAAATCATTCTAATATGCTGATTTGCTGCTCAAGAAACATTTCTTATTATTATCAATGTTGAAAACAGCTGTGTTGCTTTTTCCAGGATTCTCTGATCTGAAATCTTTGTAATATTATAAATGTCAACTTTTGATCAATTTAATTCATCCTTGCTGAATAACAGTATTAATTCCTTAAAAAAAATCTTACTGAACCCAAGCTTTTGAATGGTAGTGTTGAATGAACCATTATCAAGTTGTTTCCAGTCAGTTAGTGTAACACCAGCTTCACTGGCCATTATGATAGCTGAAAGCATTAAAGCATACAACATATTTCCTTGTGTCCTGTTGTTACATATTAATTCTCAAATAAGATTGATCAAAATGATCTTCAGTGATCATGTAGACAAACGCTGTGTGAAAGATGAAGCATGGATCATAGCAGGAAGACTGTATGGACACTGTAAGAAAGTCCTTGTGTGTGTGTGTGTGTGTGTGCGCGCGTGTGAGTGAGTGAGTGTGTGTTGAATATAACAGCAGTAGGTTTGGGGATGATAGAGGTTAAAGGCAAATAAAAATAATAACTCGCTTCTTGCCCTGTACAGTGAAGCATTTCAGGTTTTTCAACAGAAGATCTGTAACTAACTAACCCCTCATCCTCTTTCCTCTGGATCACTCATTCCACAGCGTGACCTCTTCCGGGATGGTGGTCCCATGTGTGAGAGAGGGGAAGGTTTTAATAGCTGGCGTCTGTCCGGTAGCTGGTGTGGTAAGAGTCTGCAGTCAGCTGAGTGGTCTCTGTGGCAGAGGACGGCTGCATCACGATGGGACTGCTGCCATCTGTGTCACCTCTCTCATCAGACTGCATCTGAGCTTCTAAGTCTTCAGGAGACACATAGAAATCCGGCTCGTCTGCCCGCGGAGGATGAGGTTTACACTTCCCACAGCAGCAGTTACAACAGCAGCACAGACAACAGCAGAAATAACAGCCTGTAGCCACACCGCAGAATATAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU17216 True 3939 lncRNA 0.35 2 4753717 4758419

Neighbor

gene id symbol gene type direction distance location
CI01000001_04723418_04724292 NA coding upstream 29359 4723354 ~ 4725671 (+)
CI01000001_04701645_04713999 NA coding upstream 39564 4701645 ~ 4714153 (+)
CI01000001_04688934_04700615 HCK, SRMS coding upstream 53013 4688934 ~ 4700704 (+)
CI01000001_04624476_04679572 NOL4LB coding upstream 73888 4624476 ~ 4679829 (+)
CI01000001_04586080_04595939 NA coding upstream 157299 4585896 ~ 4596418 (+)
CI01000001_04773238_04776581 MGC83062, GID8, GID8.L, CT011, GID8A, GID8B coding downstream 14282 4772701 ~ 4777329 (+)
CI01000001_04779079_04792659 SLC17A9B, SLC17A9 coding downstream 20518 4778937 ~ 4792827 (+)
CI01000001_04901365_04901652 NA coding downstream 142856 4901275 ~ 4902567 (+)
CI01000001_04914279_04922772 RND1B, RND1, RND1A coding downstream 155731 4914150 ~ 4923679 (+)
CI01000001_04936808_04943256 PRIM1 coding downstream 178389 4936808 ~ 4943455 (+)
G15389 NA non-coding upstream 26977 4598677 ~ 4726740 (+)
G15404 NA non-coding upstream 187175 4566270 ~ 4566542 (+)
G15371 NA non-coding upstream 262336 4486920 ~ 4491381 (+)
G15370 NA non-coding upstream 266918 4481838 ~ 4486799 (+)
G15416 NA non-coding downstream 39057 4797476 ~ 4797794 (+)
G15419 NA non-coding downstream 42554 4800973 ~ 4801530 (+)
G15789 NA non-coding downstream 176952 4935371 ~ 4935990 (+)
G15798 NA non-coding downstream 244751 5003170 ~ 5003390 (+)
G15800 NA non-coding downstream 247403 5005822 ~ 5006037 (+)
CI01000001_03618075_03620436 NA other upstream 1132266 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 3082713 1667762 ~ 1671167 (+)
G13051 NA other upstream 3708565 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 4261660 483853 ~ 488825 (+)
G12614 NA other upstream 4442776 309144 ~ 310941 (+)
G15794 NA other downstream 302799 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 528330 5279837 ~ 5287698 (+)
G15995 NA other downstream 953466 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 2774153 7531541 ~ 7540586 (+)
G17234 NA other downstream 3273705 8032124 ~ 8032483 (+)

Expression


Co-expression Network