LOC122328378


Basic Information

Item Value
gene id LOC122328378
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 4200644 ~ 4202140 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU229337
GTTCAACTTCATAAAGAGCGCGCGACGCGGGAAAGACGCCGAAACGCTGGAGTTACCCTCTCAGAGCTGCTGGAGGCAAAGCGAGCCTTCAGCCCGTCAAAGCCGGAGACTCGGGGAGACGAGCCGAGCGGATCCGCAGAGAGACCGTGTCTCCAGAGAAGAGTCCCCGAGGACACGACCGAGACCGAGACCGGGCAGCTGTCTGACAAACACCACTGTGAACACCTGGATGAGCAAGGAAACCGTAGAAGACGAGCAGGAAGCAGGCGTGAACGCTCATGTTTTTGCC
>XR_006247789.1
TAGTTCAACTTCATAAAGAGCGCGCGACGCGGGAAAGACGCCGAAACGCTGTCAGCGATATTTTACCGCTCTGTGCGTTCAGGATTACAGCCCGCACCCCTGTCAGACACATCTCATTTTTAATCGTCTTATTTTTAGGGAGTTACCCTCTCAGAGCTGCTGGAGGCAAAGCGAGCCTTCAGCCCGTCAAAGCCGGAGACTCGGGGAGACGAGCCGAGCGGATCCGCAGAGAGACCGTGTCTCCAGAGAAGAGTCCCCGAGGACACGACCGAGACCGAGACCGGGCAGCTGTCTGACAAACACCACTGTGAACACCTGGATGAGCAAGGAAACCGTAGAAGACGAGCAGGAAGCAGGCGTGAACGCTCATGTTTTTGCCAGTCATCATCAGTTAAAGCAGCGAGTGGTCACAGCACCTCCTCCGAGTCTGAGCGGACAGACGAAAATGACAACATCCTCTACGGCTCCTCTGAGACGTCTCTGACACAGCGGCTGACCGAGGAGCGTGATCTCAGCGCTGACCTGACTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU229337 False 289 lncRNA 0.59 3 4200882 4202138
XR_006247789.1 True 531 lncRNA 0.56 3 4200644 4202140

Neighbor

gene id symbol gene type direction distance location
csrp1a csrp1a,csrp1,LOC107697020,LOC107559179,LOC107673143,LOC107707378,LOC100304834 coding downstream 272738 3922484 ~ 3927906 (-)
phlda3 phlda3,LOC107673137,LOC107598124,LOC107746504,LOC107697022,LOC107559178 coding downstream 280822 3917778 ~ 3919822 (-)
tnni1a tnni1a,LOC107598157,LOC107746527,LOC107673122,LOC107696961,LOC103149619 coding downstream 287153 3907262 ~ 3913491 (-)
tnnt2a tnnt2a,LOC107559170,LOC107696942 coding downstream 306968 3882020 ~ 3893676 (-)
LOC122329314 lgr6,LOC107746507,LOC107559174,LOC107697027,LOC107707372,LOC107673397 coding downstream 429781 3701606 ~ 3770863 (-)
bmp7b bmp7b,bmp7,LOC107750885,LOC107565994,LOC107673428,LOC107696936 coding upstream 7174 4209314 ~ 4247138 (-)
mipb mipb,LOC107565996,LOC107705750 coding upstream 86130 4288270 ~ 4289469 (-)
LOC122328525 LOC107696959,LOC107601327,LOC107565993,LOC107673245,LOC101885864,LOC103025508,LOC107750891 coding upstream 90093 4292233 ~ 4298594 (-)
baz2a baz2a,LOC107697014,LOC107673266,LOC107705669,LOC107601319 coding upstream 101415 4303555 ~ 4327917 (-)
ptges3b ptges3b,LOC107750889,LOC107601352,LOC107673275,LOC107697015,LOC107705749 coding upstream 128575 4330715 ~ 4337025 (-)
G154787 NA non-coding downstream 135115 4063965 ~ 4065529 (-)
G154789 NA non-coding downstream 135764 4063523 ~ 4064880 (-)
G154783 NA non-coding downstream 150064 4050290 ~ 4050580 (-)
G154764 NA non-coding downstream 261594 3938573 ~ 3939050 (-)
G154763 NA non-coding downstream 263006 3937351 ~ 3937638 (-)
G154895 rbm38,LOC107565990,LOC107705751,LOC107673236,LOC107697017 non-coding upstream 81629 4283769 ~ 4343867 (-)
G154933 NA non-coding upstream 344743 4546883 ~ 4550218 (-)
G155085 NA non-coding upstream 477843 4679983 ~ 4680279 (-)
G155092 NA non-coding upstream 505525 4707665 ~ 4710337 (-)
G155093 NA non-coding upstream 510549 4712689 ~ 4713082 (-)
LOC122329268 LOC107707377,LOC107673205,LOC107746501,LOC107697018,LOC107601321,LOC107598138,LOC108443130,LOC103026736,LOC106572423 other downstream 5646 4173914 ~ 4194998 (-)
lad1 LOC107746516,LOC107696941,LOC107559160 other downstream 294752 3894966 ~ 3905892 (-)
tspan2b tspan2b,LOC107709234,LOC107696969,LOC107746340,LOC107566064,LOC107673514,LOC107554202 other downstream 682502 3502265 ~ 3518142 (-)
LOC122328836 LOC107566068 other downstream 754680 3434124 ~ 3445964 (-)
G154446 NA other downstream 1243372 2925048 ~ 2957272 (-)
LOC122329181 LOC107601337,LOC107697001,LOC107723119 other upstream 625338 4827478 ~ 4834520 (-)
G155227 si:zfos-452g4.1,LOC107724183,LOC107663057,LOC107696954,LOC107551515,LOC107705659,LOC107593949 other upstream 1252277 5454417 ~ 5455047 (-)
LOC122329286 nav1b,LOC107666060,LOC107595432,LOC107740254,LOC107696445,LOC107587625 other upstream 1275701 5477841 ~ 5479822 (-)
LOC122329188 LOC107709248,LOC107687290,LOC107558915,LOC107671882,LOC107572785,LOC107723742,LOC107701749,LOC107549048,LOC107756350 other upstream 1282072 5484212 ~ 5496474 (-)
G155489 LOC107681366,LOC107727023,LOC107705691 other upstream 2528711 6730851 ~ 6731886 (-)

Expression


Co-expression Network