LOC122328815 (krt18,LOC107681396,LOC107727028,LOC107551541,LOC107666358,LOC107568050,LOC107705701)


Basic Information

Item Value
gene id LOC122328815
gene name krt18,LOC107681396,LOC107727028,LOC107551541,LOC107666358,LOC107568050,LOC107705701
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 6384561 ~ 6457809 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU230039
ttttttttttttttttttTTTGATAAAGGTGTCTTTTATTTGAAAGGAAAAGACATGATCACaacaacacaacataaaaacaaaatgggaCAACTGATGATCATAAACAATCATTgtcattacaaaatgtattaaatataaagctTCAATAGTGTTTTGACCTTTAGATTTTTTGGTTGtagtcattaaaatgttaaaattttgtTACAATTTTTAAGTTAGTGTTGAAATGTGCTAGTTAAAACTCATTGCATATATGCTCTGAGACACTTACAATAAGGCACTTTGGACTAAATAAATATCGAAAGTGTTAAGTCCAGCATGTCTTTAGATCATTTTATCATTGGCCCATGAGGTTTTTCTGATGTGTTGTGGAGGTTGATCTCAAATATGATGTTCAAAGTTTCCTCTCCTTGGTTTCTGTGCTTGAAGACACCACCTTCCCGTCCACCAGCGTTTGCGTGACAGTCATCACTTTCACCTTCTTTTGCTCTTCAAGAGCATCCTGGAGCCTGCAGGAGAAAACATACCTGTTACccacaatacaaaacaaataccTAGCAAAAGTTTTACATGTCTACACAACTGGTAAAGTGCTGTGAAAAATCTCAATatgcttaagaaaaaaaaacttacttgaAGTCTCCGCCATCCAGAAGTCTCCTGTAGGTGGCAATTTCTGCCTCCAGCTTCATCTTGATGTTCAGCAGAGCCTCGTACTCCTGTGTCTGTTGCTGGATGCTGTTACGAAGTTGTGTGAGCTCAGCCTCCAGTTGCAGGAGAATGGCATTAAGACTCTCGATCTCCATGTTGTATCTCATTTCTGTGTCCCGCAGAGTGGCCTCCAGTGATCCtttctgTTTTCTGTGACTCCAGCTCAATCTCTAGTGTCTGAATTTGTCTGCGAAGATCGTTGACTTCTGTACGTGCACCCTGGAGGGCctctgtgttctgtgtgacTTGTACCTGAATCTCTGAGATCTGGCGAGAGGATAAAATTTCAAATTAGCCCCAAAACAGCTGTACTGACAAGACTCAATTTCATGAAAATGATTGTCTTTTGGAATATACCTGAGATTCATGCCAGGCCTTCAGCTCCTCCTGGTTCTTCAGGGCCATTTTCTCGTACTTAGCTCTAATCTCCTCCATGATCTGGGCCAGATCCTGTCCTTTAGGAGCATCAACATCCACCTGCACTCCTGACTGGGAGATCTGGTTACGAAGCTCCATTACCTCCT
>TU230043
tttttatattttcttttttttATTTGATAAAGGTGTCTTTTATTTGAAAGGAAAAGACATGATCACaacaacacaacataaaaacaaaatgggaCAACTGATGATCATAAACAATCATTgtcattacaaaatgtattaaatataaagctTCAATAGTGTTTTGACCTTTAGATTTTTTGGTTGtagtcattaaaatgttaaaattttgtTACAATTTTTAAGTTAGTGTTGAAATGTGCTAGTTAAAACTCATTGCATATATGCTCTGAGACACTTACAATAAGGCACTTTGGACTAAATAAATATCGAAAGTGTTAAGTCCAGCATGTCTTTAGATCATTTTATCATTGGCCCATGAGGTTTTTCTGATGTGTTGTGGAGGTTGATCTCAAATATGATGTTCAAAGTTTCCTCTCCTTGGTTTCTGTGCTTGAAGACACCACCTTCCCGTCCACCAGCGTTTGCGTGACAGTCATCACTTTCACCTTCTTTTGCTCTTCAAGAGCATCCTGGAGCtgaAGTCTCCGCCATCCAGAAGTCTCCTGTAGGTGGCAATTTCTGCCTCCAGCTTCATCTTGATGTTCAGCAGAGCCTCGTACTCCTGTGTCTGTTGCTGGATGCTGTTACGAAGTTGTGTGAGCTCAGCCTCCAGTTGCAGGAGAATGGCATTAAGACTCTCGATCTCCATGTTGTATCTCATTTCTGTGTCCCGCAGAGTGGCCTCCAGTGATCCtttcGGTTTTTCTGTGACTCCAGCTCAATCTCTAGTGTCTGAATTTGTCTGCGAAGATCGTTGACTTCTGTACGTGCACCCTGGAGGGCctctgtgttctgtgtgacTTGTACCTGAATCTCTGAGATCTGGCGAGAGGATAAAATTTCAAATTAGCCCCAAAACAGCTGTACTGACAAGACTCAATTTCATGAAAATGATTGTCTTTTGGAATATACCTGAGATTCATGCCAGGCCTTCAGCTCCTCCTGGTTCTTCAGGGCCATTTTCTCGTACTTAGCTCTAATCTCCTCCATGATCTGGGCCAGATCCTGTCCTTTAGGAGCATCAACATCCACCTGCACTCCTGACTGGGAGATCTGGTTACGAAGCTCCATTACCTCCT
>TU230045
CTTTAGGGTCCTTTTTACTtgcatgctatttttgttttacagtagcAGAATGACACAAAACCCTTGTATTGGAGGATGATGAAAGGCTAATGACACCAACACAAGCAGATACGTGCATGTCTAACCTGTCGGATTTTCACCTCCAGCTCAGTGTTGGCCTTCTCCAGGCTCCTAACTTCCTCCAGTAAAGAGCTCTTCGACGAAAATGAGATCAGATACAACTGCTGGTTCTGAAAGGTATGAGATTTTTATGGTTTTGCAGTTCACAAGTAGTAGACACATTTCCATTATCTTTAGACTCTGGACTTCCACCACACCCATTGCTTAGTGTTATAGTAGTATTAACTGGGTAACACAACATGTATGAAATTCTTTATGTAGGACACAaaaagatatttagaagaatGCTAAGTGTTATTTTGTCTGTACAGtgaaagtcatttaaatgattGTCTGAGGTTCCACAGGGTTATATTTTGGGATCCCTCGTGAGCTATAGGAAGCTTTGGACTAAACGGTGctatttttgactattttttaaatttaattctgtgGACAAATACATTTGAAACATTGCCTAAAGTATCTAGTTTTGTGTTTGCAGAAAGAAGAAATTTACACACATTTGGCACAACATGAGCTCACCTTCTTGCGCAGATCATCAATGATGGGCTGGAAGCGGCTGTAGTCGTGCACATCAGGACCTCTCTTCTCCAGGGCCTCGCGGATCTTCAGCTCCAGCTTGCTGTTGGCCTGCTCCAGGGTCCTCACTTTGTCCAGGTAGGAGGCCAGACGGTCATTCAAGTTCTGCATGGCCATCTTCTCGTTGCCCATGATCTCACCTGTGGCTCCAGTGGCACTCACTTGGATGGAGCTGGACATTGAGGGGAGTCCAATTCCACTGCGGACACCTGAGTAGGAGGCAGTGGAGATTCGGGTTCCTTGACCTCCGGCGCCAGCGTAGATGCTCGCAGCCCGGTAAGTCGGCACGTTGGTGGTACGCTTGATGGACATCTGGGACATCTGGGACACCGGCACCTGGGAGGTGGAGGATCGCACACTGTAGCTTGTTCTCAAACTCATGGTCGCTGAAGTGAATGAACAGATGAAGGACTGGAGAGAGGTAGAGCTCAGTAACACAGTCAGAAGAGTGCAC
>XR_006247836.1
GTTATAGTAGTATTAACTGGGTAACACAACATGTATGAAATTCTTTATGTAGGACACAaaaagatatttagaagaatGCTAAGTGTTATTTTGTCTGTACAGtgaaagtcatttaaatgattGTCTGAGGTTCCACAGGGTTATATTTTGGGATCCCTCGTGAGCTATAGGAAGCTTTGGACTAAACGAAAGAAGAAATTTACACACATTTGGCACAACATGAGGTAAGTACTGTAAATAATAGTatatgaatttcatttttgggtgaaccctACATTTTCTCATGGTAATTTTTAAGCATTGTGTCCTTTAGAGTCCATTTCAACTCAGATTTCATATAAGTCTTAACATAGACAACCTGTATAAACTTGTGTTCATACAACATTGCACACTCCATGAATGCTGTCTGCAAGTCTTTTTTCAGTTCTCACAATATCTATGAATTTTGTTACAAATCACAGTGGCTGAAATAAATTTCAAAGATGCTGACTTCCACAGCAAAAGGTCTCATCATAACTGGtattatttaatactttcaCCTCGGTACCCCAAAAAAAAGTGCCAAGAATGATGCCCACAACTACTTTTTATCAGACATGTGAAATTGTTATATAACTTTAATAAAGGAAAGACGATGCAAAGATTTGATAAAGGTGTCTTTTATTTGAAAGGAAAAGACATGATCACaacaacacaacataaaaacaaaatgggaCAACTGATGATCATAAACAATCATTgtcattacaaaatgtattaaatataaagctTCAATAGTGTTTTGACCTTTAGATTTTTTGGTTGtagtcattaaaatgttaaaattttgtTACAATTTTTAAGTTAGTGTTGAAATGTGCTAGTTAAAACTCATTGCATATATGCTCTGAGACACTTACAATAAGGCACTTTGGACTAAATAAATATCGAAAGTGTTAAGTCCAGCATGTCTTTAGATCATTTTATCATTGGCCCATGAGGTTTTTCTGATGTGTTGTGGAGGTTGATCTCAAATATGATGTTCAAAGTTTCCTCTCCTTGGTTTCTGTGCTTGAAGACACCACCTTCCCGTCCACCAGCGTTTGCGTGACAGT

Function

symbol description
krt18 Enables scaffold protein binding activity. Involved in Golgi to plasma membrane CFTR protein transport; intermediate filament cytoskeleton organization; and negative regulation of apoptotic process. Located in centriolar satellite; cytosol; and keratin filament. Implicated in liver cirrhosis. Biomarker of liver disease (multiple); non-alcoholic fatty liver disease (multiple); and primary sclerosing cholangitis.

NR:

description
PREDICTED: keratin, type I cytoskeletal 18

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU230039 True 1238 lncRNA 0.40 3 6410045 6455532
TU230043 False 1118 lncRNA 0.41 4 6384561 6455532
TU230045 False 1156 lncRNA 0.46 4 6438508 6457809
XR_006247836.1 False 1094 lncRNA 0.33 2 6453423 6454603

Neighbor

gene id symbol gene type direction distance location
foxp1a foxp1a,LOC107727024,LOC107681376,LOC107568046,LOC107705705,LOC107666297 coding upstream 14576 6338411 ~ 6369985 (+)
eif4e3 eif4e3,LOC107568047,LOC107705706,LOC107666244,LOC107681400,LOC107727004 coding upstream 46423 6333323 ~ 6338138 (+)
rybpa rybpa,LOC107666235,LOC107705708,LOC107727016,LOC107681380,LOC107568051 coding upstream 52342 6323926 ~ 6332219 (+)
pdzrn3a LOC107727014,LOC107551536,LOC107681378,LOC107705709,LOC107568048,LOC107666574,LOC107666213 coding upstream 68863 6292711 ~ 6315698 (+)
cntn3a.2 cntn3a.2,LOC107727029,LOC107681399,LOC107705655,LOC108438229,LOC108275552,LOC107568042 coding upstream 114334 6202638 ~ 6270227 (+)
krt8 krt8,LOC107681390,LOC107551542,LOC107705700,LOC107666368 coding downstream 27619 6485428 ~ 6490071 (+)
krt5 LOC107727021,LOC107551543,LOC107681386,LOC107559866,LOC107705699 coding downstream 51882 6509691 ~ 6514093 (+)
plxnb1a plxnb1a,LOC107551544,LOC107726992,LOC107705653,LOC107666389,LOC107681368,LOC107559853,LOC108275501,LOC105889750 coding downstream 67802 6525611 ~ 6589601 (+)
prkcbp1l LOC107551546,LOC107681388,LOC107727017,LOC107666406,LOC107705695 coding downstream 145837 6603646 ~ 6622410 (+)
mapre1b mapre1b,LOC107559863,LOC107681395,LOC107666429,LOC107551545,LOC107727025 coding downstream 165045 6622854 ~ 6633347 (+)
G155330 LOC107727022,LOC107681375 non-coding upstream 4196 6376070 ~ 6380365 (+)
G155295 NA non-coding upstream 246923 6134980 ~ 6137638 (+)
G155263 NA non-coding upstream 459950 5924402 ~ 5924611 (+)
G155262 NA non-coding upstream 464504 5919766 ~ 5920057 (+)
LOC122329298 NA non-coding upstream 588249 5793282 ~ 5796312 (+)
G155360 NA non-coding downstream 749 6458558 ~ 6459029 (+)
LOC122328814 NA non-coding downstream 3510 6461319 ~ 6482153 (+)
G155371 slc16a7,LOC107727020,LOC107559865,LOC100699719,LOC102785214,LOC101478097 non-coding downstream 143600 6601409 ~ 6602083 (+)
G155372 NA non-coding downstream 178072 6635881 ~ 6637488 (+)
G155454 NA non-coding downstream 245364 6703173 ~ 6705526 (+)
LOC122328459 g6pd,LOC107723128,LOC107697003,LOC107594489 other upstream 1549077 4817365 ~ 4835484 (+)
ube2t ube2t,LOC107746510,LOC107707375,LOC107673550 other upstream 2687539 3694652 ~ 3697022 (+)
mitfb LOC107704626,LOC107709243,LOC107748437,LOC108438070,LOC107687304,LOC107558923,LOC107709232 other upstream 3287526 3060509 ~ 3097035 (+)
rbm10 LOC107709225,LOC107687301,LOC107704624,LOC107748436 other upstream 3374544 2995169 ~ 3010017 (+)
LOC122329169 NA other upstream 3440755 2925308 ~ 2943806 (+)
si:ch211-220i18.4 LOC107551506,LOC107666586,LOC107559855,LOC107681367,LOC107705652,LOC108275527,LOC107100285 other downstream 134793 6592602 ~ 6598532 (+)
G155561 NA other downstream 768185 7225994 ~ 7238919 (+)
tcea2 tcea2,LOC107681409,LOC107551521,LOC107705683,LOC107571665,LOC107666524 other downstream 840551 7298360 ~ 7305534 (+)
LOC122328506 klhl14,LOC107677170,LOC107599684,LOC107554641,LOC107717384 other downstream 1863896 8321705 ~ 8333376 (+)
G155799 NA other downstream 2030277 8488086 ~ 8488641 (+)

Expression


Co-expression Network