rps21 (rps21,LOC107666483,LOC107681394,LOC106572905)


Basic Information

Item Value
gene id rps21
gene name rps21,LOC107666483,LOC107681394,LOC106572905
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 6766608 ~ 6823032 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU230273
CTCTTTCCTTTCCGCGTCGGCCATTTGTGATAATAGACAGCTGACTGACGGTCATCAGATAAAGTCGAGATGCAGAACGACGCTGGTGAGTTCGTGGACCTCTACGTCCCCCGTAAATGctCTGCTAGCAACAGAATTATTGGCGCCAAGGATCATGCCTCCATCCAGATCAACATTGCTGAGGTGGACAGGGCTACAGGCAGGTTCAATGGACAGTTCAAGACCTACGCCATCTGCGGCGCCATCCGTAGAATGGGTGAAGCTGATGACTCCCTCTTGAGGCTCGCGAAGAACGACAGCATTGTGGCGAAGTAAGCCCATGAACGCCTAAAAAGGAGGtttctttgtaaaataaaaaaaataaaattggacACCTGtgtaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaaaaa
>TU230274
CTCTTTCCTTTCCGCGTCGGCCATTTGTGATAATAGACAGCTGACTGACGGTCATCAGATAAAGTCGAGATGCAGAACGACGCTGGTGAGTTCGTGGACCTCTACGTCCCCCGTAAATGctCTGCTAGCAACAGAATTATTGGCGCCAAGGATCATGCCTCCATCCAGATCAACATTGCTGAGGTGGACAGGGCTACAGGCAGGTTCAATGGACAGTTCAAGACCTACGCCATCTGCGGCGCCATCCGTAGAATGGGTGAAGCTGATGACTCCCTCTTGAGGCTCGCGAAGAACGACAGCATTGTGGCGAAGAACGCCTAAAAAGGAGGtttctttgtaaaataaaaaaaataaaattggacACCTGtgtctgttgttttgttttttttaattattattattgtgggAGTCCATGAAAATTATTAATAGCTGCTTCTCTTTAAGggacatgaataattaaaattatttgaaatgttcatTATTATAAGATTAACCGTTAATCATGGGAAAAGAGAACAAGCTG
>TU230275
CTCTTTCCTTTCCGCGTCGGCCATTTGTGATAATAGACAGCTGACTGACGGTCATCAGATAAAGTCGAGATGCAGAACGACGCTGGTGAGTTCGTGGACCTCTACGTCCCCCGTAAATGctCTGCTAGCAACAGAATTATTGGCGCCAAGGATCATGCCTCCATCCAGATCAACATTGCTGAGGTGGACAGGGCTACAGGCAGGTTCAATGGACAGTTCAAGACCTACGCCATCTGCGGCGCCATCCGTAGAATGGGTGAAGCTGATGACTCCCTCTTGAGGCTCGCGAAGAACGACAGCATTGTGGCGAAGTAAGCCCATGAACGCCTAAAAAGGAGGtttctttgtaaaataaaaaaaataaaattggaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaaaaaa
>TU230276
CTCTTTCCTTTCCGCGTCGGCCATTTGTGATAATAGACAGCTGACTGACGGTCATCAGATAAAGTCGAGATGCAGAACGACGCTGGTGAGTTCGTGGACCTCTACGTCCCCCGTAAATGctCTGCTAGCAACAGAATTATTGGCGCCAAGGATCATGCCTCCATCCAGATCAACATTGCTGAGGTGGACAGGGCTACAGGCAGGTTCAATGGACAGTTCAAGACCTACGCCATCTGCGGCGCCATCCGTAGAATGGGTGAAGCTGATGACTCCCTCTTGAGGCTCGCGAAGAACGACAGCATTGTGGCGAAGTAAGCCCATGAACGCCTAAAAAGGAGGtttctttgtaaaataaaaaaaataaaattggaaaaaaaaaaaaaacaa
>TU230277
CTCTTTCCTTTCCGCGTCGGCCATTTGTGATAATAGACAGCTGACTGACGGTCATCAGATAAAGTCGAGATGCAGAACGACGCTGGTGAGTTCGTGGACCTCTACGTCCCCCGTAAATGctCTGCTAGCAACAGAATTATTGGCGCCAAGGATCATGCCTCCATCCAGATCAACATTGCTGAGGTGGACAGGGCTACAGGCAGGTTCAATGGACAGTTCAAGACCTACGCCATCTGCGGCGCCATCCGTAGAATGGGTGAAGCTGATGACTCCCTCTTGAGGCTCGCGAAGAACGACAGCATTGTGGCGAAGTAAGCCCATGAACGCCTAAAAAGGAGGtttctttgtaaaataaaaaaaataaaattggaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaaaaaa
>TU230278
CTCTTTCCTTTCCGCGTCGGCCATTTGTGATAATAGACAGCTGACTGACGGTCATCAGATAAAGTCGAGATGCAGAACGACGCTGGTGAGTTCGTGGACCTCTACGTCCCCCGTAAATGctCTGCTAGCAACAGAATTATTGGCGCCAAGGATCATGCCTCCATCCAGATCAACATTGCTGAGGTGGACAGGGCTACAGGCAGGTTCAATGGACAGTTCAAGACCTACGCCATCTGCGGCGCCATCCGTAGAATGGGTGAAGCTGATGACTCCCTCTTGAGGCTCGCGAAGAACGACAGCATTGTGGCGAAGTAAGCCCATGAACGCCTAAAAAGGAGGtttctttgtaaaataaaaaaaataaaattggacAaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaaaaaa
>XM_043224020.1
aaaatcCTGGTGCTCTTATCCTAGCTTCCGTGTTACGTCACTTCCTGGCTCTGTCTCTTTCCTTTCCGCGTCGGCCATTTGTGATAATAGACAGCTGACTGACGGTCATCAGATAAAGTCGAGATGCAGAACGACGCTGGTGAGTTCGTGGACCTCTACGTCCCCCGTAAATGctCTGCTAGCAACAGAATTATTGGCGCCAAGGATCATGCCTCCATCCAGATCAACATTGCTGAGGTGGACAGGGCTACAGGCAGGTTCAATGGACAGTTCAAGACCTACGCCATCTGCGGCGCCATCCGTAGAATGGGTGAAGCTGATGACTCCCTCTTGAGGCTCGCGAAGAACGACAGCATTGTGGCGAAGAACGCCTAAAAAGGAGGtttctttgtaaaataaaaaaaataaaattgga
>XM_043224021.1
aaaatcCTGGTGCTCTTATCCTAGCTTCCGTGTTACGTCACTTCCTGGCTCTGTCTCTTTCCTTTCCGCGTCGGCCATTTGTGATAATAGACAGCTGACTGACGGTCATCAGATAAAGTCGAGATGCAGAACGACGCTGGTGAGTTCGTGGACCTCTACGTCCCCCGTAAATGctCTGCTAGCAACAGAATTATTGGCGCCAAGGATCATGCCTCCATCCAGATCAACATTGCTGAGGTGGACAGGGCTACAGGCAGGTTCAATGGACAGTTCAAGACCTACGCCATCTGCGGCGCCATCCGTAGAATGGGTGAAGCTGATGACTCCCTCTTGAGGCTCGCGAAGAACGACAGCATTGTGGCGAAGTAAGCCCATGAACGCCTAAAAAGGAGGtttctttgtaaaataaaaaaaataaaattgga

Function

symbol description
rps21 Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation; endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); and endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within translation. Predicted to be located in polysomal ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS21 (ribosomal protein S21).

NR:

description
40S ribosomal protein S21-like

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU230273 False 421 TUCP 0.45 8 6773578 6822978
TU230274 True 523 TUCP 0.42 6 6820774 6822978
TU230275 False 428 TUCP 0.43 9 6773578 6822978
TU230276 False 387 TUCP 0.47 7 6766608 6822978
TU230277 False 413 TUCP 0.44 8 6773578 6822978
TU230278 False 414 TUCP 0.44 8 6773578 6822978
XM_043224020.1 False 415 mRNA 0.49 6 6820936 6823032
XM_043224021.1 False 425 mRNA 0.49 6 6820936 6823032

Neighbor

gene id symbol gene type direction distance location
osbpl2b osbpl2,osbpl2b,LOC107727008,LOC107681391,LOC107666451,LOC107705692 coding downstream 45038 6713359 ~ 6721570 (-)
adrm1 adrm1,LOC107727009,LOC103354471,LOC108276396 coding downstream 53401 6708712 ~ 6713207 (-)
slc16a7 slc16a7,LOC107559865,LOC107705697,LOC107666398,LOC108429289 coding downstream 164525 6598718 ~ 6602083 (-)
zgc:171775 zgc:171775,LOC107705698,LOC107551519,LOC107681372,LOC107666627,LOC107559857,LOC107727002 coding downstream 244764 6515811 ~ 6521844 (-)
krt18a.1 krt18,LOC107727028,LOC107681396,LOC107551541,LOC107666358,LOC107705701,LOC107568050 coding downstream 308689 6454153 ~ 6457919 (-)
cables2b cables2b,LOC107681405,LOC107705686,LOC107551510,LOC107559848,LOC107726996 coding upstream 15775 6838807 ~ 6857465 (-)
LOC122328429 xkr7,LOC107551551,LOC107666518,LOC107681407,LOC107559858,LOC107705685,LOC107727032,LOC108435212 coding upstream 48945 6871977 ~ 6926416 (-)
LOC122328474 LOC107551551,LOC107666518,LOC107727032,LOC107705685,LOC107681407,LOC107559858 coding upstream 185865 7008897 ~ 7060251 (-)
sox18 sox18,LOC107727030,LOC107681403,LOC107705673,LOC107551552,LOC107666636,LOC107579252 coding upstream 265145 7088177 ~ 7091244 (-)
rgs19 rgs19,LOC107727031,LOC107666537,LOC107681401,LOC107551553,LOC107705684 coding upstream 487538 7310570 ~ 7342699 (-)
G155443 NA non-coding downstream 141340 6624419 ~ 6625268 (-)
G155435 NA non-coding downstream 154084 6611993 ~ 6612524 (-)
G155392 LOC107559866,LOC107705699,LOC107666380,LOC108429286 non-coding downstream 252515 6509715 ~ 6514093 (-)
G155391 krt8,LOC107551542,LOC108411779,LOC107727027,LOC105023875,LOC107681390,LOC107568038,LOC107705700 non-coding downstream 266859 6485439 ~ 6499749 (-)
G155413 NA non-coding downstream 281693 6484654 ~ 6484915 (-)
G155508 NA non-coding upstream 12343 6835375 ~ 6835589 (-)
G155578 NA non-coding upstream 14097 6837129 ~ 6838566 (-)
G155586 NA non-coding upstream 106654 6929686 ~ 7067824 (-)
G155597 NA non-coding upstream 277276 7100308 ~ 7106154 (-)
G155605 NA non-coding upstream 297371 7120403 ~ 7301136 (-)
G155489 LOC107681366,LOC107727023,LOC107705691 other downstream 34722 6730851 ~ 6731886 (-)
LOC122329188 LOC107709248,LOC107687290,LOC107558915,LOC107671882,LOC107572785,LOC107723742,LOC107701749,LOC107549048,LOC107756350 other downstream 1270134 5484212 ~ 5496474 (-)
LOC122329286 nav1b,LOC107666060,LOC107595432,LOC107740254,LOC107696445,LOC107587625 other downstream 1286786 5477841 ~ 5479822 (-)
G155227 si:zfos-452g4.1,LOC107724183,LOC107663057,LOC107696954,LOC107551515,LOC107705659,LOC107593949 other downstream 1311561 5454417 ~ 5455047 (-)
LOC122329181 LOC107601337,LOC107697001,LOC107723119 other downstream 1932088 4827478 ~ 4834520 (-)
ccm2l ccm2l,LOC107666505,LOC107551511 other upstream 34975 6858007 ~ 6867300 (-)
LOC122328436 cables2b,LOC107681405,LOC107705686,LOC107551510,LOC107559848,LOC107726996,LOC107666605 other upstream 141710 6964742 ~ 6981961 (-)
LOC122329304 ccm2l,LOC107666505,LOC107551511 other upstream 171135 6994167 ~ 7003523 (-)
G155596 sox18,LOC107727030,LOC107681403,LOC107551552,LOC107666636,LOC107705673,LOC107571663 other upstream 453416 7276448 ~ 7278323 (-)
G155807 NA other upstream 1722362 8545394 ~ 8551977 (-)

Expression


Co-expression Network