tcea2 (tcea2,LOC107681409,LOC107551521,LOC107705683,LOC107571665,LOC107666524)


Basic Information

Item Value
gene id tcea2
gene name tcea2,LOC107681409,LOC107551521,LOC107705683,LOC107571665,LOC107666524
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 7298360 ~ 7305534 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU230347
AGCGGAGAGAAAGGCAGCGGATTCCTCTCATACTGCCACtaaaagagacacacacagagacgggCGCATTTTCCCCACATAAATGGAGGCACGGCCATCGGGCGCCATCAAACAGCCCTAAACCTGTAAACATGGTGAAGGACCAAGAAGTGGAGCGCATCGCGAAGAAGCTGGACAAAATGGTGCATAAGAAAAACACTGACGGTGCCATCGACCTGCTCCGGGAGCTGAAGAACACGAAGATGTCTTTGGAGACCTTGCAGTCCACGCGGATCGGGATGTCGGTGAATGCGGTGAGGAAGCAGAGCTCGGATGAGGAGGTGCAGACACTGGCCAAATCTCTCATCAAGACCTGGAAGAAACTGCTGGATGGTTCTGAGGGTAAAgcggaggagaagaaaaaaggaGGGTCTCCTCTCCAGTCCTCGTCTTCTAAAGACTGTCCTGGATCCAGTGACACCAGTAACAAACCGGAGACCCCAAAAACCCCACCACCCCGTCACCCCCAAGTTCACCACCTTCCCACCGGCCCCCGTGACGACGGACAGCGTGCGCACCAAGTGCAGAGAGCTGCTGGTGGCGGCCCTACAGACCGATGgtgATTACCAGACGATCGGCGTAGACTGTGAACACCTGGCAGCACAGATTGAAGATTGTATCTACCAGGAGTTCAAGTCCACTGACATGAAGTACAAGACCAGACTGAGGAGTCGCATCTCCAACCTCAAGGACCAGAAAAACCCAGACTTGCGCCGGAACGTCTTGTGCGGCAACATCTCTGCAGACCGCATCGCCAGCATGACCGCAGAGGAGATGGCCAGCGCAGAGCTCAAAGAGATCAGGAAAGCGCTGACCAAGGAGTCCATTCGAGAGCATCAGCTCTCCAAAGTGGGCGGCACCGAGACGGACATGTTCGTCTGTGGAAAATGCAAGGGCAAGAACTGCACTTACACTCAGGTCCAGACACGCAGCGCAGATGAACCCATGACCACCTTCGTGCTGTGCAACGAGTGTGGAAACCGGTGGAAGGTAAGActcttttggtttatttatc
>XM_043223976.1
TTTGATGAATAAGCTCTCTACAAATACACTTTTAGGTGGAAAACTGTAGGTTAAGTCAACAAACGATATGGTTAAATTTCTGCTGTAGCTATTTTCTAGCTGCGTGTGTTAAAGGGCAGACTCTTAAATGAAACTtgtaaaaactttaatattaaattaaattaaaaggcaCTTGGTCTACTACCAAGACAAAATGAGTTGTTTCCGAAATGTTTGTACGAAAATGGCCTGGTCCAAAATATCAGAACTGTTAGAAATACTGTTTCACGTTATTTAACTGGTTTGCTGTTGACTCCAATTCCCAGAACACCCTGCTTCAAGAATCAATGGGCAGTTCGAATCATTTCAAAgaatcggttcttttgaacaGGGCGTTCAAAGAACCGCTtctaaaaaactattttttttttaaattaggtaCATTTGTAATACAAGTAAATTTGTCATCAGATCATCAAAGACACCTCGGCGTGGCCTGTAAAATGTCCTAAAACTCTATGATAATCACtgcaaattattcattaaaacgtGTTTATTGTAATTCCACGTGCCTAGTTCAGTTCGTTGCAGAGCATGATTTATCTCCTAACACATTTGCGTTTGTAACGTTGAGAAATCTGCCATCATATTAACTCCTAAACGTTtcgaatatataaataatttgtaacatTGCCACTATTAAGGTAACTTACTGCTCGCGCCGTCAGCTCACTTTTCGCGCTCAATGCGAGtttaacatctaaaaaaaagatGCGGTTCTTGTGAGTCGGCAAAAGTGACTCGAGAACCGCTCTTACCGATTCAGTCTGATTCGCGAATGAATCGCTTGTCCCGGAACAGGCTCGTTTGATTCCGTGAAAAGATTCAACCAAAAAGAACGACTCGCTCGCGATTCGAACGGCGATATACAACATTCTAGAGCGGAGAGAAAGGCAGCGGATTCCTCTCATACTGCCACtaaaagagacacacacagagacgggCGCATTTTCCCCACATAAATGGAGGCACGGCCATCGGGCGCCATCAAACAGCCCTAAACCTGTAAACATGGTGAAGGACCAAGAAGTGGAGCGCATCGCGAAGAAGCTGGACAAAATGGTGCATAAGAAAAACACTGACGGTGCCATCGACCTGCTCCGGGAGCTGAAGAACACGAAGATGTCTTTGGAGACCTTGCAGTCCACGCGGATCGGGATGTCGGTGAATGCGGTGAGGAAGCAGAGCTCGGATGAGGAGGTGCAGACACTGGCCAAATCTCTCATCAAGACCTGGAAGAAACTGCTGGATGGTTCTGAGGGTAAAgcggaggagaagaaaaaaggaGGGTCTCCTCTCCAGTCCTCGTCTTCTAAAGACTGTCCTGGATCCAGTGACACCAGTAACAAACCGGAGACCCCAAAAACCCCACCCCCCGTCACCCCCAAGTTCACCACCTTCCCACCGGCCCCCGTGACGACGGACAGCGTGCGCACCAAGTGCAGAGAGCTGCTGGTGGCGGCCCTACAGACCGATGgtgATTACCAGACGATCGGCGTAGACTGTGAACACCTGGCAGCACAGATTGAAGATTGTATCTACCAGGAGTTCAAGTCCACTGACATGAAGTACAAGACCAGACTGAGGAGTCGCATCTCCAACCTCAAGGACCAGAAAAACCCAGACTTGCGCCGGAACGTCTTGTGCGGCAACATCTCTGCAGACCGCATCGCCAGCATGACCGCAGAGGAGATGGCCAGCGCAGAGCTCAAAGAGATCAGGAAAGCGCTGACCAAGGAGTCCATTCGAGAGCATCAGCTCTCCAAAGTGGGCGGCACCGAGACGGACATGTTCGTCTGTGGAAAATGCAAGGGCAAGAACTGCACTTACACTCAGGTCCAGACACGCAGCGCAGATGAACCCATGACCACCTTCGTGCTGTGCAACGAGTGTGGAAACCGGTGGAAGTTTTGTTAAAGACTAAAGTGAGCAGGATTCTTCATATGAAGAGATGACCTGAATTCACAGTATAAGgaaattagtttttcttttcagaaaaaacaaacctgatgtcctttttttcatatatataaatatacatgcattttcatAGCTTTGTAATATAGAATGAGTGTTGCTACTTCAAAAAgctatttctgtattttttttttctttttttactggtGTAATATTATTGCCTTTCACGCACTGCCGATAACTTAAGTCAGCTGGCTTGTTCAGTCTTGCTTTGCCTTTTGATATAGAGCTTGTGCCTTTCTGCTCTATGAGTGCCAAGTAATTGCTGAAAGAATTTGTACACATTCATACATATGtcgatttagtttttttttttgttttttttttgtggggaaCATGTGCATTTCATATGTTTATGCACTTTGCAGATGATTTATTTAACCAAATCTTAAATGATTGGTTACTTTTTCCAGAGTTTGGAAAGACTTAAAGGATTATAGTTAATATTTGAGCCTTAGTGTAGGCGGGAGTTTGCTTCTTGTAGAGAACCGGACggggagaaaaaaacagaatgtgGTACATAATTAAAGGTTCATATGTATTGTATGAATAATTGGACTGTTCTGTCTCAGTAAATTTGGCTAAGAATA

Function

symbol description
tcea2 Predicted to enable translation elongation factor activity and zinc ion binding activity. Predicted to act upstream of or within regulation of transcription, DNA-templated; transcription, DNA-templated; and translational elongation. Predicted to be located in nucleus. Is expressed in lens; olfactory placode; and peripheral olfactory organ. Orthologous to human TCEA2 (transcription elongation factor A2).

NR:

description
PREDICTED: transcription elongation factor A protein 2-like

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006414 translational elongation biological_process
GO:0032784 regulation of DNA-templated transcription, elongation biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03145 TFIIS; transcription elongation factor S-II

RNA

RNA id representative length rna type GC content exon number start site end site
TU230347 False 1054 TUCP 0.54 9 7299279 7304358
XM_043223976.1 True 2606 mRNA 0.43 11 7298360 7305534

Neighbor

gene id symbol gene type direction distance location
soga1 LOC107727023,LOC107705691,LOC107681366,LOC107666465 coding upstream 525374 6730816 ~ 6772986 (+)
lama5 lama5,LOC107681381,LOC107727012,LOC107666435,LOC107705651 coding upstream 589693 6640878 ~ 6708667 (+)
mapre1b mapre1b,LOC107559863,LOC107681395,LOC107666429,LOC107551545,LOC107727025 coding upstream 665013 6622854 ~ 6633347 (+)
prkcbp1l LOC107551546,LOC107681388,LOC107727017,LOC107666406,LOC107705695 coding upstream 675950 6603646 ~ 6622410 (+)
plxnb1a plxnb1a,LOC107551544,LOC107726992,LOC107705653,LOC107666389,LOC107681368,LOC107559853,LOC108275501,LOC105889750 coding upstream 708759 6525611 ~ 6589601 (+)
oprl1 oprl1,LOC107727003,LOC107681404,LOC107666560,LOC107705672,LOC106572940 coding downstream 153964 7459498 ~ 7487536 (+)
myt1b myt1b,LOC107690850,LOC107747484,LOC107681384,LOC107559484,LOC107558231 coding downstream 378770 7684304 ~ 7765052 (+)
LOC122328639 LOC107707759,LOC107559486,LOC107747485,LOC107690852,LOC107558232,LOC100536777,LOC107681385,LOC108440950 coding downstream 460689 7766223 ~ 7773972 (+)
LOC122328711 LOC107707759,LOC107559486,LOC107747485,LOC107690852,LOC107558232,LOC100536777,LOC107681385,LOC108440950 coding downstream 509557 7815091 ~ 7821793 (+)
plagl2 plagl2,LOC107690855,LOC107559482,LOC107707758,LOC107681868,LOC107747490,LOC107558237 coding downstream 578762 7884296 ~ 7920041 (+)
G155509 NA non-coding upstream 459199 6836963 ~ 6839161 (+)
G155457 NA non-coding upstream 476310 6797111 ~ 6822050 (+)
LOC122328804 NA non-coding upstream 570150 6725037 ~ 6728210 (+)
LOC122328803 NA non-coding upstream 574496 6720370 ~ 6723864 (+)
G155455 NA non-coding upstream 591101 6703511 ~ 6707259 (+)
G155619 NA non-coding downstream 95456 7400990 ~ 7401189 (+)
LOC122328944 NA non-coding downstream 561246 7866780 ~ 7868674 (+)
G155651 NA non-coding downstream 614669 7920203 ~ 7921525 (+)
G155645 NA non-coding downstream 616488 7922022 ~ 7923577 (+)
G155655 tm9sf4,LOC107681873 non-coding downstream 624199 7929733 ~ 7932056 (+)
G155561 NA other upstream 59441 7225994 ~ 7238919 (+)
si:ch211-220i18.4 LOC107551506,LOC107666586,LOC107559855,LOC107681367,LOC107705652,LOC108275527,LOC107100285 other upstream 699828 6592602 ~ 6598532 (+)
LOC122328459 g6pd,LOC107723128,LOC107697003,LOC107594489 other upstream 2462876 4817365 ~ 4835484 (+)
ube2t ube2t,LOC107746510,LOC107707375,LOC107673550 other upstream 3601338 3694652 ~ 3697022 (+)
mitfb LOC107704626,LOC107709243,LOC107748437,LOC108438070,LOC107687304,LOC107558923,LOC107709232 other upstream 4201325 3060509 ~ 3097035 (+)
LOC122328506 klhl14,LOC107677170,LOC107599684,LOC107554641,LOC107717384 other downstream 1016171 8321705 ~ 8333376 (+)
G155799 NA other downstream 1182552 8488086 ~ 8488641 (+)
lzic lzic,LOC107708836,LOC107718820,LOC107681991,LOC107570802,LOC107695771,LOC107586557 other downstream 1635497 8941031 ~ 9101372 (+)
G155927 zgc:194189,LOC107570831,LOC107708788,LOC107681978,LOC107695725,LOC107586555,LOC107718823 other downstream 1815350 9120884 ~ 9122393 (+)
G156081 phip,LOC107656532,LOC107708770,LOC107549027 other downstream 2378212 9683746 ~ 9769620 (+)

Expression


Co-expression Network