LOC122329304 (ccm2l,LOC107666505,LOC107551511)


Basic Information

Item Value
gene id LOC122329304
gene name ccm2l,LOC107666505,LOC107551511
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 6994167 ~ 7003523 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU230379
TGAGAGGAGATTGGGCCTGTCCTAAACAGggacacacatacaaacacacactcttgcaCACACAGCTAGCCATCAGGCTGGTCGATATGGACTATGAGCCCAAGCGAGCCAAGAAGGGCTTTGTAAAGCGCCTAGTGTTCCCTAAATCTAGCCGGCGTCAGGCAGACAAAGGCAGTGTGTACCGCAGACCCCTTCACACTGTCCCCCTCTACCCACCTGACTACCTCATCCACCCAGAGAGACTCATCTACGACTATGTGGAAAAGGAAGTCAAGTTCCTGGGACACTTGACTTGGGTGTCATGTTCCCTGAACCCGTCCAGCAGAGATGAGCTTCTGCAGCTTCTGGACACAGCCAGGAAACTGAGGGTTTTGCCTCTGAAGACCAGTGTGGAGCAGGACTGCATTCTCAGCCTGTCTGCTCGCTGTCTGCTGCTTACCTGGAGGGACAACGAAAAACTGCTGCTGAGAATCCCCACACATGAAATCGCTGCTGCCTCCTACCTGCGGGATGATGCACTGCACCTACTGGTGCTCAAAACTGgTTTGAATGTGGACACTGTACTAGCTGGTGACACTTTGGAGAACAGGCCCACTGGTTTGGAGAGCCGCAGACAAACTATAAGCAACACTGACCCCAGGCCTGCAGGGGGCACCATGGAGCGCCGCCACACCATCTGTGGTGTGGACTGGAAGCTCTCGTCCCGCCATGAGCCTAAACAGAGC
>TU230386
ACCaatagaatttacatttttaagcggatagatgccaataaagaattGTTCCTGCATAAACTGGActgaataaagtatttttaaaattttgcctTCAAATGTGGTTCCCAacttttggaaacacaaaatgaatcatggttattttaaaataccagTACTTCCATTTCCCAATAGTATAGAATGAGTATATTTCCATctgtgggtgaacaatccactGCAGTTGTCTAAATGAGTGTCTCTTAAACGTTCTGTGTCCTGTTCTCATTGGTTAGTTGAGGAGTAAGCTGGTGCCtcaggagattcaggagtttgCTCTGTTTCTGAGAGAATACAGACTTGGTGCTCCGATAGAGCAGTTCTGCACTGACCTGCTGCAGCTCTATGGAGACTCGCGCAAGTTCCTGCTGCTTGGCATGAGGCCCTTTATTCCAGATAAGGATGTAGGAGTGTTCGAGACGTTTCTGGAAGACATTGGGATCCGAGAGGGTGGGATTTTGACAGACAGTTTTGGCCGGATCAAGCGGAGCATGAGCAGCACATCTGCCACAGCAGTCCGGGGCTATGACGGCTGGACTCTTCCTTCCGGTTCCCAGGATTTTAACCGCAGAATTGATGACATCACACACAACATTGAGGCTTTGGGCTTTGAGGAAGGGAACGGAGACATAGAAGAGGAGGATTATTACCTGTGAACTGTTGCACTGGAGTTTTTTAAAGACAGGGTTTAGGTCGCACATTTCTTTGATACAAAATATTCAAACTAGTTTATAGCATTTATAGTATATGTGCACTTTACTGGGCCACACGGAGTGCTGCTGATGAAAAATGGACGTTTTGCATCCTATTTGCATTTGTGAATAGGCGTATTATTTGCATGCAAGTTTGATTATGTCATGTTCTGCGTCCGTGAGTTACAAAAGAGCACCAATGCAGTGAGGAAGTGCCAGAGAGAACCTAagtaattacatattatttggAGAAAAGGTCACTTAGAcataaaaggagaaaaagagtAAGCAATCATATAATAATGATGACAGTGATGATGATGGTAATCTTCTGGAGCCGGAGGGTCGTTGACTGTGGCTGCTGTCTGAAGGGAGAGTAACTCATGAAAAACTCAACCTTGACATTCTTTCCAGTGACACTGCCACCTTGCCACAGTCTAGTGCCCTTCCCTTCCCTCTTATCTATGCCAACCACTGAAGGTTGATGGGCTCTGCGCCCAGCATCGGGGGTTATCAAAATGGCACATACATCTGTCAGGCTAAACGTTTGTTATGTAATAGGACTGGGCAGAAGAACAGGGCCAGATAGGGTTTAGTTTAAAGTTAAACCTCTTCTCACACCCAAACAATCTTAGTAGTCAAACCAGCAGGGTGGCAATAACAAATGTTTGTCCATGGCCGTGTGATGAAGAGGGCCAGCTGAGGTCCTCTGTGGAATATCTTAGTCAGTAGGTCATAGGACGGAGGGCCCAGTGGAATTATTTTTGACTTACGTTCCCATTGAAATAAAGAACCGACTGACTTTGTAGTACTGTTTATAATAgttaaacactgtaaaatgttatgaattaaaatgtta
>XM_043225536.1
GTATTTCCTGCACAGTCCTGCCTGGCTCCAGAGGGCTGAGAGGAGATTGGGCCTGTCCTAAACAGggacacacatacaaacacacactcttgcaCACACAGCTAGCCATCAGGCTGGTCGATATGGACTATGAGCCCAAGCGAGCCAAGAAGGGCTTTGTAAAGCGCCTAGTGTTCCCTAAATCTAGCCGGCGTCAGGCAGACAAAGGCAGTGTGTACCGCAGACCCCTTCACACTGTCCCCCTCTACCCACCTGACTACCTCATCCACCCAGAGAGACTCATCTACGACTATGTGGAAAAGGAAGTCAAGTTCCTGGGACACTTGACTTGGGTGTCATGTTCCCTGAACCCGTCCAGCAGAGATGAGCTTCTGCAGCTTCTGGACACAGCCAGGAAACTGAGGGTTTTGCCTCTGAAGACCAGTGTGGAGCAGGACTGCATTCTCAGCCTGTCTGCTCGCTGTCTGCTGCTTACCTGGAGGGACAACGAAAAACTGCTGCTGAGAATCCCCACACATGAAATCGCTGCTGCCTCCTACCTGCGGGATGATGCACTGCACCTACTGGTGCTCAAAACTGgTTTGAATGTGGACACTGTACTAGCTGGTGACACTTTGGAGAACAGGCCCACTGGTTTGGAGAGCCGCAGACAAACTATAAGCAACACTGACCCCAGGCCTGCAGGGGGCACCATGGAGCGCCGCCACACCATCTGTGGTGTGGACTGGAAGCTCTCGTCCCGCCATGAGCCTAAACAGAGCAGCGTGGGTGGAGGAGGTGGGACAGGGGGTGGAGGaagtggtggtggtggtggtggtggtgatgagGACAGCCTAGAACGGAAACGTGTGAGCGGGAGTTGGGAGCGTAGACAGACTCGGAAGCCATGCGGAGGTAGCTGGGAGAAACGACCAGTGAGTGGAAGTTGGGACCGGAGGCCTGTAGGGGGCAGCTGGGAACGTCGGGGAGGTGGAGGGGTCATAGGAGGTAGCTGGGAAAAGAGGCACGGGCCTGGAGCTAAACCAGGTGGAAGCTGGGAAAGGAAGCACACGCCAGGTGGCAGTTGGGAACGCAGGCAGGCTTGCACAGGAAGCTGGGAGAGGGGAAAGTCCTACGGCAGCTGGGAGAGGAGGAACCATAATCCACTGGAGCCCATGCCATGCCCTGATGCCTACTGCAACCTCGTCATACTGGCTGTAGAGAACAGGGACGCTGCAGAGGAGTACTGCGCACTCATCTGTcaaatgtttcagatcatctaTGGACATCAGACCATTGAATGTGTCGACAGGGCGGGATATCACTACACCATGCCTGACCGCTATTGGCTACAGAGGAGTGACAGCTGCCTTACTGACATGACATATGGCTATGACACAGACTTCAGCTGCTGCAGTTCATATGATGGTTCACAGGAAGCATTTGATCCGTATTATAGTGAGAACTACAGTGAGAGCTCATCTCTCTCCTGCCATGAGTCACATCGAAGCCTGGCCTCCACACACAGCGACTCTGAGCCCTGTAATGCCAGTCTGCAGGAGTACATGATCATTTTGAGGAGTAAGCTGGTGCCtcaggagattcaggagtttgCTCTGTTTCTGAGAGAATACAGACTTGGTGCTCCGATAGAGCAGTTCTGCACTGACCTGCTGCAGCTCTATGGAGACTCGCGCAAGTTCCTGCTGCTTGGCATGAGGCCCTTTATTCCAGATAAGGATGTAGGAGTGTTCGAGACGTTTCTGGAAGACATTGGGATCCGAGAGGGTGGGATTTTGACAGACAGTTTTGGCCGGATCAAGCGGAGCATGAGCAGCACATCTGCCACAGCAGTCCGGGGCTATGACGGCTGGACTCTTCCTTCCGGTTCCCAGGATTTTAACCGCAGAATTGATGACATCACACACAACATTGAGGCTTTGGGCTTTGAGGAAGGGAACGGAGACATAGAAGAGGAGGATTATTACCTGTGAACTGTTGCACTGGAGTTTTTTAAAGACAGGGTTTAGGTCGCACATTTCTTTGATACAAAATATTCAAACTAGTTTATAGCATTTATAGTATATGTGCACTTTACTGGGCCACACGGAGTGCTGCTGATGAAAAATGGACGTTTTGCATCCTATTTGCATTTGTGAATAGGCGTATTATTTGCATGCAAGTTTGATTATGTCATGTTCTGCGTCCGTGAGTTACAAAAGAGCACCAATGCAGTGAGGAAGTGCCAGAGAGAACCTAagtaattacatattatttggAGAAAAGGTCACTTAGAcataaaaggagaaaaagagtAAGCAATCATATAATAATGATGACAGTGATGATGATGGTAATCTTCTGGAGCCGGAGGGTCGTTGACTGTGGCTGCTGTCTGAAGGGAGAGTAACTCATGAAAAACTCAACCTTGACATTCTTTCCAGTGACACTGCCACCTTGCCACAGTCTAGTGCCCTTCCCTTCCCTCTTATCTATGCCAACCACTGAAGGTTGATGGGCTCTGCGCCCAGCATCGGGGGTTATCAAAATGGCACATACATCTGTCAGGCTAAACGTTTGTTATGTAATAGGACTGGGCAGAAGAACAGGGCCAGATAGGGTTTAGTTTAAAGTTAAACCTCTTCTCACACCCAAACAATCTTAGTAGTCAAACCAGCAGGGTGGCAATAACAAATGTTTGTCCATGGCCGTGTGATGAAGAGGGCCAGCTGAGGTCCTCTGTGGAATATCTTAGTCAGTAGGTCATAGGACGGAGGGCCCAGTGGAATTATTTTTGACTTACGTTCCCATTGAAATAAAGAACCGACTGACTTTGTAGTACTGTTTATAATAgttaaacactgtaaaatgttatgaattaaaatgttatacataCCTAAAAT

Function

symbol description
ccm2l Acts upstream of or within anterior/posterior axis specification; heart contraction; and heart morphogenesis. Is expressed in heart and notochord. Orthologous to human CCM2L (CCM2 like scaffold protein).

NR:

description
PREDICTED: cerebral cavernous malformations 2 protein-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU230379 False 725 TUCP 0.54 5 7000585 7003487
TU230386 False 1587 TUCP 0.42 2 6994181 6996809
XM_043225536.1 True 2882 mRNA 0.50 10 6994167 7003523

Neighbor

gene id symbol gene type direction distance location
LOC122328429 xkr7,LOC107551551,LOC107666518,LOC107681407,LOC107559858,LOC107705685,LOC107727032,LOC108435212 coding downstream 67751 6871977 ~ 6926416 (-)
cables2b cables2b,LOC107681405,LOC107705686,LOC107551510,LOC107559848,LOC107726996 coding downstream 136702 6838807 ~ 6857465 (-)
acss2 acss2,LOC107681393,LOC107551550,LOC107666475,LOC107559859 coding downstream 174324 6805369 ~ 6819843 (-)
osbpl2b osbpl2,osbpl2b,LOC107727008,LOC107681391,LOC107666451,LOC107705692 coding downstream 272597 6713359 ~ 6721570 (-)
adrm1 adrm1,LOC107727009,LOC103354471,LOC108276396 coding downstream 280960 6708712 ~ 6713207 (-)
LOC122328474 LOC107551551,LOC107666518,LOC107727032,LOC107705685,LOC107681407,LOC107559858 coding upstream 5374 7008897 ~ 7060251 (-)
sox18 sox18,LOC107727030,LOC107681403,LOC107705673,LOC107551552,LOC107666636,LOC107579252 coding upstream 84654 7088177 ~ 7091244 (-)
rgs19 rgs19,LOC107727031,LOC107666537,LOC107681401,LOC107551553,LOC107705684 coding upstream 307047 7310570 ~ 7342699 (-)
npbwr2b npbwr2,LOC107558229,LOC107727007,LOC571123,LOC107559472,LOC107705671,LOC108410549,LOC107666655 coding upstream 518541 7522064 ~ 7525501 (-)
kif3b kif3b,LOC107690851,LOC107558233,LOC107559485,LOC107681362 coding upstream 770778 7774301 ~ 7782717 (-)
G155578 NA non-coding downstream 155601 6837129 ~ 6838566 (-)
G155508 NA non-coding downstream 158578 6835375 ~ 6835589 (-)
LOC122328996 NA non-coding downstream 189248 6794103 ~ 6804919 (-)
G155443 NA non-coding downstream 368899 6624419 ~ 6625268 (-)
G155435 NA non-coding downstream 381643 6611993 ~ 6612524 (-)
G155597 NA non-coding upstream 96785 7100308 ~ 7106154 (-)
G155605 NA non-coding upstream 116880 7120403 ~ 7301136 (-)
G155606 NA non-coding upstream 119406 7122929 ~ 7124586 (-)
G155607 NA non-coding upstream 121305 7124828 ~ 7305564 (-)
G155620 NA non-coding upstream 397458 7400981 ~ 7401192 (-)
LOC122328436 cables2b,LOC107681405,LOC107705686,LOC107551510,LOC107559848,LOC107726996,LOC107666605 other downstream 12206 6964742 ~ 6981961 (-)
ccm2l ccm2l,LOC107666505,LOC107551511 other downstream 126867 6858007 ~ 6867300 (-)
rps21 rps21,LOC107666483,LOC107681394,LOC106572905 other downstream 171135 6766608 ~ 6823032 (-)
G155489 LOC107681366,LOC107727023,LOC107705691 other downstream 262281 6730851 ~ 6731886 (-)
LOC122329188 LOC107709248,LOC107687290,LOC107558915,LOC107671882,LOC107572785,LOC107723742,LOC107701749,LOC107549048,LOC107756350 other downstream 1497693 5484212 ~ 5496474 (-)
G155596 sox18,LOC107727030,LOC107681403,LOC107551552,LOC107666636,LOC107705673,LOC107571663 other upstream 272925 7276448 ~ 7278323 (-)
G155807 NA other upstream 1541871 8545394 ~ 8551977 (-)
G155827 NA other upstream 1622235 8625758 ~ 8628391 (-)
c23h1orf127 LOC107708840,LOC107570680 other upstream 1909539 8913062 ~ 8919770 (-)
sst6 LOC107681964,LOC107571825,LOC107695779,LOC107570713,LOC107681961 other upstream 1918041 8921564 ~ 8926751 (-)

Expression


Co-expression Network