ccm2l (ccm2l,LOC107666505,LOC107551511)



Basic Information


Item Value
gene id ccm2l
gene name ccm2l,LOC107666505,LOC107551511
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 6858007 ~ 6867300 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>TU230380
ggacacacatacaaacacacactcttgcaCACACAGCTAGCCATCAGGCTGGTCGATATGGACTATGAGCCCAAGCGAGCCAAGAAGGGCTTTGTAAAGCGCCTAGTGTTCCCTAAATCTAGCCGGCGTCAGGCAGACAAAGGCAGTGTGTACCGCAGACCCCTTCACACTGTCCCCCTCTACCCACCTGACTACCTCATCCACCCAGAGAGACTCATCTACGACTATGTGGAAAAGGAAGTCAAGTTCCTGGGACACTTGACTTGGGTGTCATGTTCCCTGAACCCGTCCAGCAGAGATGAGCTTCTGCAGCTTCTGGACACAGCCAGGAAACTGAGGGTTTTGCCTCTGAAGACCAGTGTGGAGCAGGACTGCATTCTCAGCCTGTCTGCTCGCTGTCTGCTGCTTACCTGGAGGGACAACGAAAAACTGCTGCTGAGAATCCCCACACATGAAATCGCTGCTGCCTCCTACCTGCGGGATGATGCACTGCACCTACTGGTGCTCAAAACTGgtTTGAATGTGGACACTGTACTAGCTGGTGACACTTTGGAGAACAGGCCCACTGGTTTGGAGAGCCGCAGACAAACTATAAGCAACACTGACCCCAGGCCTGCAGGGGGCACCATGGAGCGCCGCCACACCATCTGTGGTGTGGACTGGAAGCTCTCGTCCCGCCATGAGCCTAAACAGAGC
>TU230387
ACCaatagaatttacatttttaagcggatagatgccaataaagaattGTTCCTGCATAAACTGGActgaataaagtatttttaaaattttgcctTCAAATGTGGTTCCCAacttttggaaacacaaaatgaatcatggttattttaaaataccagTACTTCCATTTCCCAATAGTATAGAATGAGTATATTTCCATctgtgggtgaacaatccactGCAGTTGTCTAAATGAGTGTCTCTTAAACGTTCTGTGTCCTGTTCTCATTGGTTAGTTGAGGAGTAAGCTGGTGCCtcaggagattcaggagtttgCTCTGTTTCTGAGAGAATACAGACTTGGTGCTCCGATAGAGCAGTTCTGCACTGACCTGCTGCAGCTCTATGGAGACTCGCGCAAGTTCCTGCTGCTTGGCATGAGGCCCTTTATTCCAGATAAGGATGTAGGAGTGTTCGAGACGTTTCTGGAAGACATTGGGATCCGAGAGGGTGGGATTTTGACAGACAGTTTTGGCCGGATCAAGCGGAGCATGAGCAGCACATCTGCCACAGCAGTCCGGGGCTATGACGGCTGGACTCTTCCTTCCGGTTCCCAGGATTTTAACCGCAGAATTGATGACATCACACACAACATTGAGGCTTTGGGCTTTGAGGAAGGGAACGGAGACATAGAAGAGGAGGATTATTACCTGTGAACTGTTGCACTGGAGAGTTTTTAAAGACAGGGTTTAGGTCGCACATTTCTTTGATACAAAATATTCAAACTAGTTTATAGCATTTATAGTATATGTGCACTTTACTGGGCCACACGGAGTGCTGCTGATGAAAATGGACGTTTTGCATCCTATTTGCATTTGTGAATAGGCGTATTATTTGCATGCAAGTTTGATTATGTCATGTTCTGCGTCCGTGAGTTACAAAAGAGCACCAATGCAGTGAGGAAGTGCCAGAGAGAACCTAagtaattacatattatttggAGAAAAGGTCACTTAGAcataaaaggagaaaaagagtAAGCAATCATATAATAATGATGACAGTGATGATGATGGTAATCTTCTGGAGCCGGAGGGTCGTTGACTGTGGCTGCTGTCTGAAGGGAGAGTAACTCATGAAAAACTCAACCTTGACATTCTTTCCAGTGACACTGCCACCTTGCCACAGTCTAGTGCCCTTCCCTTCCCTCTTATCTATGCCAACCACTGAAGGTTGATGGGCTCTGCGCCCAGCATCGGGGGTTATCAAAATGGCACATACATCTGTCAGGCTAAACGTTTGTTATGTAATAGGACTGGGCAGAAGAACAGGGCCAGATAGGGTTTAGTTTAAAGTTAAACCTCTTCTCACACCCAAACAATCTTAGTAGTCAAACCAGCAGGGTGGCAATAACAAATGTTTGTCCATGGCCGTGTGATGAAGAGGGCCAGCTGAGGTCCTCTGTGGAATATCTTAGTCAGTAGGTCATAGGACGGAGGGCCCAGTGGAATTATTTTTGACTTACGTTCCCATTGAAATAAAGAACCGACTGACTTTGTAGTACTGTTTATAATAgttaaacactgtaaaatgttatgaattaaaatgttatacata
>XM_043225551.1
TTGGGCCTGTCCTAAACAGggacacacatacaaacacacactcttgcaCACACAGCTAGCCATCAGGCTGGTCGATATGGACTATGAGCCCAAGCGAGCCAAGAAGGGCTTTGTAAAGCGCCTAGTGTTCCCTAAATCTAGCCGGCGTCAGGCAGACAAAGGCAGTGTGTACCGCAGACCCCTTCACACTGTCCCCCTCTACCCACCTGACTACCTCATCCACCCAGAGAGACTCATCTACGACTATGTGGAAAAGGAAGTCAAGTTCCTGGGACACTTGACTTGGGTGTCATGTTCCCTGAACCCGTCCAGCAGAGATGAGCTTCTGCAGCTTCTGGACACAGCCAGGAAACTGAGGGTTTTGCCTCTGAAGACCAGTGTGGAGCAGGACTGCATTCTCAGCCTGTCTGCTCGCTGTCTGCTGCTTACCTGGAGGGACAACGAAAAACTGCTGCTGAGAATCCCCACACATGAAATCGCTGCTGCCTCCTACCTGCGGGATGATGCACTGCACCTACTGGTGCTCAAAACTGgtTTGAATGTGGACACTGTACTAGCTGGTGACACTTTGGAGAACAGGCCCACTGGTTTGGAGAGCCGCAGACAAACTATAAGCAACACTGACCCCAGGCCTGCAGGGGGCACCATGGAGCGCCGCCACACCATCTGTGGTGTGGACTGGAAGCTCTCGTCCCGCCATGAGCCTAAACAGAGCAGCGTGGGTGGAGGAGGTGGGACAGGGGGTGGAGGaagtggtggtggtggtggtggtggtgatgagGACAGCCTAGAACGGAAACGTGTGAGCGGGAGTTGGGAGCGTGAACAGACTCGGAAGCCATGCGGAGGTAGCTGGGAGAAACGACCAGTGAGTGGAAGTTGGGACCGGAGGCCTGTAGGGGGCAGCTGGGAACGTCGGGGAGGTGGAGGGGTCATAGGAGGTAGCTGGGAAAAGAGGCACGGGCCTGGAGCTAAACCAGGTGGAAGCTGGGAAAGGAAGCACACGCCAGGTGGCAGTTGGGAACGCAGGCAGGCTTGCACAGGAAGCTGGGAGAGGGGAAAGTCCTACGGCAGCTGGGAGAGGAGGAACCATAATCCACTGGAGCCCATGCCATGCCCTGATGCCTACTGCAACCTCGTCATACTGGCTGTAGAGAACAGGGACGCTGCAGAGGAGTACTGCGCACTCATCTGTcaaatgtttcagatcatctaTGGACATCAGACCATTGAATGTGTCGACAGGGCGGGATATCACTACACCATGCCTGACCGCTATTGGCTACAGAGGAGTGACAGCTGCCTTACTGACATGACATATGGCTATGACACAGACTTCAGCTGCTGCAGTTCATATGATGGTTCACAGGAAGCATTTGATCCGTATTATAGTGAGAACTACAGTGAGAGCTCATCTCTCTCCTGCCATGAGTCACATCGAAGCCTGGCCTCCACACACAGCGACTCTGAGCCCTGTAATGCCAGTCTGCAGGAGTACATGATCATTTTGAGGAGTAAGCTGGTGCCtcaggagattcaggagtttgCTCTGTTTCTGAGAGAATACAGACTTGGTGCTCCGATAGAGCAGTTCTGCACTGACCTGCTGCAGCTCTATGGAGACTCGCGCAAGTTCCTGCTGCTTGGCATGAGGCCCTTTATTCCAGATAAGGATGTAGGAGTGTTCGAGACGTTTCTGGAAGACATTGGGATCCGAGAGGGTGGGATTTTGACAGACAGTTTTGGCCGGATCAAGCGGAGCATGAGCAGCACATCTGCCACAGCAGTCCGGGGCTATGACGGCTGGACTCTTCCTTCCGGTTCCCAGGATTTTAACCGCAGAATTGATGACATCACACACAACATTGAGGCTTTGGGCTTTGAGGAAGGGAACGGAGACATAGAAGAGGAGGATTATTACCTGTGAACTGTTGCACTGGAGAGTTTTTAAAGACAGGGTTTAGGTCGCACATTTCTTTGATACAAAATATTCAAACTAGTTTATAGCATTTATAGTATATGTGCACTTTACTGGGCCACACGGAGTGCTGCTGATGAAAATGGACGTTTTGCATCCTATTTGCATTTGTGAATAGGCGTATTATTTGCATGCAAGTTTGATTATGTCATGTTCTGCGTCCGTGAGTTACAAAAGAGCACCAATGCAGTGAGGAAGTGCCAGAGAGAACCTAagtaattacatattatttggAGAAAAGGTCACTTAGAcataaaaggagaaaaagagtAAGCAATCATATAATAATGATGACAGTGATGATGATGGTAATCTTCTGGAGCCGGAGGGTCGTTGACTGTGGCTGCTGTCTGAAGGGAGAGTAACTCATGAAAAACTCAACCTTGACATTCTTTCCAGTGACACTGCCACCTTGCCACAGTCTAGTGCCCTTCCCTTCCCTCTTATCTATGCCAACCACTGAAGGTTGATGGGCTCTGCGCCCAGCATCGGGGGTTATCAAAATGGCACATACATCTGTCAGGCTAAACGTTTGTTATGTAATAGGACTGGGCAGAAGAACAGGGCCAGATAGGGTTTAGTTTAAAGTTAAACCTCTTCTCACACCCAAACAATCTTAGTAGTCAAACCAGCAGGGTGGCAATAACAAATGTTTGTCCATGGCCGTGTGATGAAGAGGGCCAGCTGAGGTCCTCTGTGGAATATCTTAGTCAGTAGGTCATAGGACGGAGGGCCCAGTGGAATTATTTTTGACTTACGTTCCCATTGAAATAAAGAACCGACTGACTTTGTAGTACTGTTTATAATAgttaaacactgtaaaatgttatgaattaaaatgttatacataCCTAAAAT

Function


symbol description
ccm2l Acts upstream of or within anterior/posterior axis specification; heart contraction; and heart morphogenesis. Is expressed in heart and notochord. Orthologous to human CCM2L (CCM2 like scaffold protein).

NR:

description
cerebral cavernous malformations 2 protein-like, partial

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU230380 False 696 TUCP 0.55 5 6864425 6867281
TU230387 False 1593 TUCP 0.42 2 6858015 6860648
XM_043225551.1 True 2836 mRNA 0.50 11 6858007 6867300

Neighbor


gene id symbol gene type direction distance location
cables2b cables2b,LOC107681405,LOC107705686,LOC107551510,LOC107559848,LOC107726996 coding downstream 542 6838807 ~ 6857465 (-)
acss2 acss2,LOC107681393,LOC107551550,LOC107666475,LOC107559859 coding downstream 38164 6805369 ~ 6819843 (-)
osbpl2b osbpl2,osbpl2b,LOC107727008,LOC107681391,LOC107666451,LOC107705692 coding downstream 136437 6713359 ~ 6721570 (-)
adrm1 adrm1,LOC107727009,LOC103354471,LOC108276396 coding downstream 144800 6708712 ~ 6713207 (-)
slc16a7 slc16a7,LOC107559865,LOC107705697,LOC107666398,LOC108429289 coding downstream 255924 6598718 ~ 6602083 (-)
LOC122328429 xkr7,LOC107551551,LOC107666518,LOC107681407,LOC107559858,LOC107705685,LOC107727032,LOC108435212 coding upstream 4677 6871977 ~ 6926416 (-)
LOC122328474 LOC107551551,LOC107666518,LOC107727032,LOC107705685,LOC107681407,LOC107559858 coding upstream 141597 7008897 ~ 7060251 (-)
sox18 sox18,LOC107727030,LOC107681403,LOC107705673,LOC107551552,LOC107666636,LOC107579252 coding upstream 220877 7088177 ~ 7091244 (-)
rgs19 rgs19,LOC107727031,LOC107666537,LOC107681401,LOC107551553,LOC107705684 coding upstream 443270 7310570 ~ 7342699 (-)
npbwr2b npbwr2,LOC107558229,LOC107727007,LOC571123,LOC107559472,LOC107705671,LOC108410549,LOC107666655 coding upstream 654764 7522064 ~ 7525501 (-)
G155578 NA non-coding downstream 19441 6837129 ~ 6838566 (-)
G155508 NA non-coding downstream 22418 6835375 ~ 6835589 (-)
LOC122328996 NA non-coding downstream 53088 6794103 ~ 6804919 (-)
G155443 NA non-coding downstream 232739 6624419 ~ 6625268 (-)
G155435 NA non-coding downstream 245483 6611993 ~ 6612524 (-)
G155586 NA non-coding upstream 62386 6929686 ~ 7067824 (-)
G155597 NA non-coding upstream 233008 7100308 ~ 7106154 (-)
G155605 NA non-coding upstream 253103 7120403 ~ 7301136 (-)
G155606 NA non-coding upstream 255629 7122929 ~ 7124586 (-)
G155607 NA non-coding upstream 257528 7124828 ~ 7305564 (-)
rps21 rps21,LOC107666483,LOC107681394,LOC106572905 other downstream 34975 6766608 ~ 6823032 (-)
G155489 LOC107681366,LOC107727023,LOC107705691 other downstream 126121 6730851 ~ 6731886 (-)
LOC122329188 LOC107709248,LOC107687290,LOC107558915,LOC107671882,LOC107572785,LOC107723742,LOC107701749,LOC107549048,LOC107756350 other downstream 1361533 5484212 ~ 5496474 (-)
LOC122329286 nav1b,LOC107666060,LOC107595432,LOC107740254,LOC107696445,LOC107587625 other downstream 1378185 5477841 ~ 5479822 (-)
G155227 si:zfos-452g4.1,LOC107724183,LOC107663057,LOC107696954,LOC107551515,LOC107705659,LOC107593949 other downstream 1402960 5454417 ~ 5455047 (-)
LOC122328436 cables2b,LOC107681405,LOC107705686,LOC107551510,LOC107559848,LOC107726996,LOC107666605 other upstream 97442 6964742 ~ 6981961 (-)
LOC122329304 ccm2l,LOC107666505,LOC107551511 other upstream 126867 6994167 ~ 7003523 (-)
G155596 sox18,LOC107727030,LOC107681403,LOC107551552,LOC107666636,LOC107705673,LOC107571663 other upstream 409148 7276448 ~ 7278323 (-)
G155807 NA other upstream 1678094 8545394 ~ 8551977 (-)
G155827 NA other upstream 1758458 8625758 ~ 8628391 (-)

Expression



Co-expression Network