G155669 (LOC107747485,LOC107707759,LOC107559486,LOC107690852,LOC107558232,LOC100536777,LOC107681385,LOC108440950)


Basic Information

Item Value
gene id G155669
gene name LOC107747485,LOC107707759,LOC107559486,LOC107690852,LOC107558232,LOC100536777,LOC107681385,LOC108440950
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 7819746 ~ 7852251 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU230540
CTGGATTGTTTTTGGGCTATCTAAGCATTGGTCTCGAGGAGAACTAAAGAAAATGGACTCCTGGACTGATGAAATGTGTAGAAATCGAGCCCGGGATCATAGAATTGCCAGATCCAATCATTGTATGCTTAGAATAGTCTTCCTGTACAGATGTAGTGTGATTATATAAAAAGCagattattttcaacatttttggtcaaaaaaaaatagaaagGTACTAACATTTTGGTCTTTTTATTGTATGaaggagtttaaaaaaaataactaatgttTTTCTAAAGTATTCCTGAGTAGGGCCAAAGATTTTGAACGCAACTATTTGAATTTGTGAAAAACACCAAAGTGCTTTATATACCTTGAATTTTTGGTGATTACCAATAAAtagactttttaattattttttttttctcttcgttTTGACACAACCTTtacaatataatttgtaaacCTTGCAATATGACAATGATTCTGTAGTGTGGGGTGCAGAAACGATGCCTGCCTTCATACGAGTGTGGAATAAAATTACAATGCGGCGTCAACCGGCAACGGTAATCGAATTAACATGATAAAATGCATCATACCACCACAAACTCCAATATTGACAAAATGCGGGTGCATTACGGCAGTACACATGCAGACGTTATTTAGTATTTTGGAGAACACAGTAGAGGCAAGGAAAAGAGTTCCAACAGTGGAGGGCCGACTTTGGGGTGCAGTCATATTAGCGAAATTTCGCAGGCAAAGAAGGTCCAACatcaaaagtcattttcaaacCAAGCGTTTTTTTCAACAAGTCAACATGGCAATTTTGCGTTACCAACGGGCAAGAGGTACTTTTCCGTACTCCCACGAAACGCCAATCGCGTGAAGCACCACTCACATCAAACCGAGCAGTTGTGGGGAATTCTCTCGAACCCCGCGGGCACGAGAGACATCTGCATGAGGAACTTCTACCTCCTTGCGTCAAACTCCCAGTCGCGCCGATGAATAGATTCCACCAAGCTAGGGTAAACGTAACCGCACCATAaagctataaaacaaaaattcatcCGCCATGTCAAACTACGCCACTTCCTAAAGTCACGctactctaaaaaaaaaaaaaaaagctcacgGCGACAAGCATTTCCCACAGGGACAATGTATCGTATCGTACACTTTGATCATCTCAATCGAAgggaaaatgaattaaaaaaagagctgcAAGAGCTCAGGCGACGTTGATTATTCGGGAAAAGGAGCTCAGTCCTTCAGTCCCGTCTCTGTACATCCCGAATCAAGGAGCTTTGCTTCTCAAAGGGATATGGATATCATGATGTCATTAATTGAGGACTTAATTGTCATGCTAATCCAgttgaggaggaggaggaggaagaagagaaagGCTTTTCTTCATGTCTAATCATCTTAACGCTACGCTGCACGTATTATCTGTCTCCACGTCTCATTTCTCCCTGTAATACAGCAGATACATCTTCAGGGGTTCAGGTAACGGTAGTCTTAGAATCTTCTCCCTCAGAATATTAACGGGAGGCTCTGCACGAGCGCAGccgcttttgtttttgtcctctTCGGTGCCGCCGCATTCGTCCTCGTCCTCCTCGGGCAGGTCTTCTCTCACTCGCCGACAACctctttcctcttcctcctccacttcctcttcttcctcttccactCCTCCGGGGTAGTTGCAGTCGTCCATGGCTGTGGGAATCATGGAGTCGTGGAGAACCACGGAGTTGACGCACTGGCGGTAGAAACGCCGGCAGAAGCGGCGGCGTTCGAAGCGGGGCCCGTAGCGGTGCATGGCCCGGGCCCCTGGGAAAGACACGCGTCTCTTTGTGCGTCCTTCTCCCATAGCTATGGGCTGCCGCAGAGTGTGGCGAATAGCAATCCGACACAGGTCCTGTAGTGTCCGCACCTCAAAAAT

Function

NR:

description
PREDICTED: protein-L-isoaspartate O-methyltransferase domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU230540 True 1930 lncRNA 0.44 2 7819746 7852251

Neighbor

gene id symbol gene type direction distance location
LOC122328356 pofut1,LOC107707748,LOC107681402,LOC107558235,LOC107747492,LOC107690856 coding downstream 31459 7784305 ~ 7788287 (-)
kif3b kif3b,LOC107690851,LOC107558233,LOC107559485,LOC107681362 coding downstream 37029 7774301 ~ 7782717 (-)
npbwr2b npbwr2,LOC107558229,LOC107727007,LOC571123,LOC107559472,LOC107705671,LOC108410549,LOC107666655 coding downstream 294245 7522064 ~ 7525501 (-)
rgs19 rgs19,LOC107727031,LOC107666537,LOC107681401,LOC107551553,LOC107705684 coding downstream 477047 7310570 ~ 7342699 (-)
sox18 sox18,LOC107727030,LOC107681403,LOC107705673,LOC107551552,LOC107666636,LOC107579252 coding downstream 728502 7088177 ~ 7091244 (-)
LOC122328943 kif3b,LOC107690851,LOC107558233,LOC107559485,LOC107681362 coding upstream 2053 7854304 ~ 7861354 (-)
LOC122328942 pofut1,LOC107707748,LOC107681402,LOC107558235,LOC107747492,LOC107690856 coding upstream 9952 7862203 ~ 7866387 (-)
tm9sf4 tm9sf4,LOC107681873,LOC107690854 coding upstream 70002 7922253 ~ 7932104 (-)
LOC122329207 hck,LOC107681869,LOC107707747,LOC107690859,LOC107747493 coding upstream 80192 7932443 ~ 7954995 (-)
gata5 gata5,LOC107681871,LOC107707745,LOC107747495,LOC107559469,LOC107690861 coding upstream 126640 7978891 ~ 7985474 (-)
G155670 LOC102294427,LOC107690852,LOC107681385,LOC108440950,LOC107559486,LOC100536777,LOC107747485 non-coding downstream 2375 7766248 ~ 7817371 (-)
G155629 NA non-coding downstream 335541 7483923 ~ 7484205 (-)
G155628 NA non-coding downstream 337254 7482027 ~ 7482492 (-)
G155627 oprl1,LOC107705672,LOC107681404,LOC107666560,LOC107727003,LOC107559467 non-coding downstream 339176 7479495 ~ 7480570 (-)
G155624 NA non-coding downstream 358444 7460929 ~ 7461302 (-)
G155698 NA non-coding upstream 120852 7973103 ~ 7973325 (-)
G155737 NA non-coding upstream 324448 8176699 ~ 8177518 (-)
G155759 NA non-coding upstream 455028 8307279 ~ 8382607 (-)
G155803 NA non-coding upstream 674151 8526402 ~ 8532927 (-)
G155825 NA non-coding upstream 772675 8624926 ~ 8625642 (-)
G155596 sox18,LOC107727030,LOC107681403,LOC107551552,LOC107666636,LOC107705673,LOC107571663 other downstream 541423 7276448 ~ 7278323 (-)
LOC122329304 ccm2l,LOC107666505,LOC107551511 other downstream 816223 6994167 ~ 7003523 (-)
LOC122328436 cables2b,LOC107681405,LOC107705686,LOC107551510,LOC107559848,LOC107726996,LOC107666605 other downstream 837785 6964742 ~ 6981961 (-)
ccm2l ccm2l,LOC107666505,LOC107551511 other downstream 952446 6858007 ~ 6867300 (-)
rps21 rps21,LOC107666483,LOC107681394,LOC106572905 other downstream 996714 6766608 ~ 6823032 (-)
G155807 NA other upstream 693143 8545394 ~ 8551977 (-)
G155827 NA other upstream 773507 8625758 ~ 8628391 (-)
c23h1orf127 LOC107708840,LOC107570680 other upstream 1060811 8913062 ~ 8919770 (-)
sst6 LOC107681964,LOC107571825,LOC107695779,LOC107570713,LOC107681961 other upstream 1069313 8921564 ~ 8926751 (-)
ctnnbip1 ctnnbip1 other upstream 1227281 9079532 ~ 9097302 (-)

Expression


Co-expression Network