G155701 (gata5,LOC107681871,LOC107603108,LOC107559469,LOC107747495,LOC107707745)


Basic Information

Item Value
gene id G155701
gene name gata5,LOC107681871,LOC107603108,LOC107559469,LOC107747495,LOC107707745
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 7984095 ~ 7985586 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU230588
TTCCCTGGCGGCCCTGGAGACCGATCATGCCGCCGTCGAAGGGCCCTGGCGTCCATGAGGTGGCCATCTCCGGGCTCATGTAGGCCGCGTACGGACTGGAGTATGAGCCGCCGACGGAGCGCACCAGGGCGCTTCCGTACTGATCCGCCCGGCCGCCGTTACCCAACACCAGCGGGTTCTGGTACGCGGCGTCCCTGCCGGTGCTGCTGCTCACCGGCGGGCTGTGCGAATAAGAGAAACCGGGAGGAGGGTGAGGGCTGCCCGGGTTGAAGGAGGAATTCTCCGCGCCGGTCTGCGGCCAGGCGTGGTGGCTGCCGAGCCCGTGGGCTTGATGCGAGGACTCGCACGTCTGGAGGTAGGGCAGGGTCTGGAGCATGGCGGGGACGCGGGTGGTGGGGACGTACACAGGTGAGCTGGCGGACGGGTGGATGTAGTTCCCGGAATCGTGCGCGTAGGGGGACGGGTTGGAAGATAGAGCCAGGCTCGAATACATGGTGTATCCGACGACTAAGCTATCCGTTCAAGTTCTGAAATCTTAAAAGTGAAGTCCAAAATCTCCAAATGCGACGGTCCGGTGAGCAGTGGCctcaaaaaaaagcaatTCTCACCAGATAAGGACGGGCAGCGATAAAGTCAGGAACCCTCTTTTCCAAGTGACCTGAGCGAATATCGCCGTGGAAGCTCCAGCCTCTTCTTTCTTCTCGATTTCAGCCCACAATTCAAACTTTGAACGCGTCTGCGacaatgtggggaaaaaaaccccGCAACCGTCCTCTCCGCGTTCGGACGCGTCCCCGTGCCTTGCCTGTATCTGGAGATAGCCGCTGCTGCAGATAATGCCCAATATAACTGTCCTCTGATTTGCTCTCTACTTTACTGCGAGTTATTTGTAAGAGCAGAACCACGTGACGCGCTCCAAAGGTAGGACCCACGGAGGAGGAGAAGAACGAGGGATAAACTAGATGTGCGCGGCGGAGGAGGGGTGTGC

Function

symbol description
gata5 Enables DNA binding activity and DNA-binding transcription factor activity. Acts upstream of with a negative effect on gene expression. Acts upstream of or within several processes, including Kupffer's vesicle development; animal organ development; and post-embryonic foregut morphogenesis. Located in nucleus. Is expressed in several structures, including DEL; cardiovascular system; digestive system; mesoderm; and presumptive structure. Orthologous to human GATA5 (GATA binding protein 5).

NR:

description
PREDICTED: transcription factor GATA-5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU230588 True 988 lncRNA 0.59 2 7984095 7985586

Neighbor

gene id symbol gene type direction distance location
plagl2 plagl2,LOC107690855,LOC107559482,LOC107707758,LOC107681868,LOC107747490,LOC107558237 coding upstream 64054 7884296 ~ 7920041 (+)
LOC122328711 LOC107707759,LOC107559486,LOC107747485,LOC107690852,LOC107558232,LOC100536777,LOC107681385,LOC108440950 coding upstream 162302 7815091 ~ 7821793 (+)
LOC122328639 LOC107707759,LOC107559486,LOC107747485,LOC107690852,LOC107558232,LOC100536777,LOC107681385,LOC108440950 coding upstream 210123 7766223 ~ 7773972 (+)
myt1b myt1b,LOC107690850,LOC107747484,LOC107681384,LOC107559484,LOC107558231 coding upstream 219043 7684304 ~ 7765052 (+)
oprl1 oprl1,LOC107727003,LOC107681404,LOC107666560,LOC107705672,LOC106572940 coding upstream 496559 7459498 ~ 7487536 (+)
slco4a1 slco4a1,LOC107603147,LOC107681874,LOC107559480,LOC107657069,LOC107707756 coding downstream 129355 8114941 ~ 8132951 (+)
ntsr1 ntsr1,LOC107559468,LOC107747990,LOC107707740,LOC107671946,LOC107657007,LOC107603109 coding downstream 170607 8156193 ~ 8175519 (+)
LOC122329211 ccdc178,LOC107555255,LOC107667113,LOC107599731 coding downstream 295640 8281226 ~ 8307764 (+)
LOC122328648 abcd4,LOC107667197,LOC107677172 coding downstream 349368 8334954 ~ 8341779 (+)
LOC122329212 LOC107732057,LOC107718040,LOC107555247,LOC107677163,LOC107599733,LOC107667194 coding downstream 366214 8351800 ~ 8353910 (+)
G155660 NA non-coding upstream 44339 7938606 ~ 7939756 (+)
G155655 tm9sf4,LOC107681873 non-coding upstream 52039 7929733 ~ 7932056 (+)
G155645 NA non-coding upstream 60518 7922022 ~ 7923577 (+)
G155651 NA non-coding upstream 62570 7920203 ~ 7921525 (+)
LOC122328944 NA non-coding upstream 115421 7866780 ~ 7868674 (+)
G155704 NA non-coding downstream 51317 8036903 ~ 8037263 (+)
LOC122328539 NA non-coding downstream 68751 8054337 ~ 8076320 (+)
G155756 LOC107563058 non-coding downstream 422580 8408166 ~ 8410045 (+)
G155813 NA non-coding downstream 627828 8613414 ~ 8617005 (+)
G155823 NA non-coding downstream 638544 8624130 ~ 8624789 (+)
tcea2 tcea2,LOC107681409,LOC107551521,LOC107705683,LOC107571665,LOC107666524 other upstream 678561 7298360 ~ 7305534 (+)
G155561 NA other upstream 745176 7225994 ~ 7238919 (+)
si:ch211-220i18.4 LOC107551506,LOC107666586,LOC107559855,LOC107681367,LOC107705652,LOC108275527,LOC107100285 other upstream 1385563 6592602 ~ 6598532 (+)
LOC122328459 g6pd,LOC107723128,LOC107697003,LOC107594489 other upstream 3148611 4817365 ~ 4835484 (+)
ube2t ube2t,LOC107746510,LOC107707375,LOC107673550 other upstream 4287073 3694652 ~ 3697022 (+)
LOC122328506 klhl14,LOC107677170,LOC107599684,LOC107554641,LOC107717384 other downstream 336119 8321705 ~ 8333376 (+)
G155799 NA other downstream 502500 8488086 ~ 8488641 (+)
lzic lzic,LOC107708836,LOC107718820,LOC107681991,LOC107570802,LOC107695771,LOC107586557 other downstream 955445 8941031 ~ 9101372 (+)
G155927 zgc:194189,LOC107570831,LOC107708788,LOC107681978,LOC107695725,LOC107586555,LOC107718823 other downstream 1135298 9120884 ~ 9122393 (+)
G156081 phip,LOC107656532,LOC107708770,LOC107549027 other downstream 1698160 9683746 ~ 9769620 (+)

Expression


Co-expression Network