ctnnbip1 (ctnnbip1)


Basic Information

Item Value
gene id ctnnbip1
gene name ctnnbip1
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 9079532 ~ 9097302 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU230977
CTTGAGTCACTCCAGCGCTGCCGACTGTCGGGATGTGACCCCGGAACAGGACGCCTCCTTATACACAATACAGCTCTCAGATACAACAAAAACGACAGAATCCTGGACCAGGAGAGCAGTGCGTCAGGAGCAGGGGGGATGAACCGAGAGGAAGCCCCTGGCAAGTCTCCTGAGGAGATGTACATCCAGCAGAAGGTGCGGGTGCTGCTCATGCTCAAGAAAATGGGATCAAATCTGACACCAAACGAGGAAGCGTTTCTGCGGAATTATGCAGGTGTGGTGCACAGCCAGATGAGTCAGTTGCCACAGCACCCTATTGACCAGGGAGCTGAGGATGTGGTGATGGCCTTTTCAAGATCAGAGACCGAGGACAGGAGACAGTGACCTCTCGCCATGCCGAGTCACTACAGctgaacacaacacaacacTGTTGACTGATGGAGAGGGCGGAGCCTGAGATGAGAGAGGGGCCGGGCTCTGCTGCATGCCAGTTGCCCCACTTCCCTTCTCTTCCCCATTCCCCTCTTCTTCCTCACACTAACTGTTACACTATCGGGCCCTGCGGCCGCACTACCTGATGACTTATAGCAAACGAGTCTGAAAGAGTCCTGGCGGGTAAATATTCGATTTGGGTTTTCAAGTTTCGTTTTTTGCATCATCCTTCCGTAAATGGCGTTTTATATTTGTTCCCATGAGAGACTTAATGGACCAAGAGCTTCATTTGTCTGGTCAAACTACGAAACAATATAAATCGCCTCATGGGTTACGTTATTACAGACGATTTTCggtttctttttctgtgtatGTCGTTTCTTGTTTTAATTGTCCACAGGATCCTGCAggtagactttttttttgtttttgttttttttttgtttactttattattttcaggGTTTTTGGTTGTTTAGTAGTTTTTCGCGTCgtaatttcttcaaaatagcatttaatgTTGTTGCGGAGGATACCGAATTGTCAAAATGGACGAGGCCCGtacacaagcacacactcacagaaCGATGTACACAAATGACCTGATGTTTCATGATCTTTTTTTCGATGTTTGGATTAATGTGAAATTTCATAgccttttttttgtacagaacGTATGAAAAAGTAGAAAAGTGAACGAGTTGTGCCAACTGtggttttatgtaaaatatttctaaaggtATCTAATGAATGTCTTAGgtccttatttattttttcaatgtcTTAAAATGTAGACGAACGCAGACCCCTTTTAAACTTCAATTCTGAATTGTAACCGCGTTTTAGTACAAACgattttaaaaactcaaataacGACAAATTTCCACATCAGATGAAAAGCCTAAGCCTTAAGCGTTGTAACAGGACGTGCCGTACTCAGATGTGGGTATGTGTCAGCATATATTTGACCGTCTGATTCAGTGGTGCTAGTGAAACACACGTTTTTAGTTATTCTGATTGAAGTCGAAGATAAATATAAGCTTGTGTGAATTTTAAAGGACGCTAAACATCTCGCGTCGACTTAATGAAaaccaaacctttttttctatTAGGAGTTTTGTGTTTTGGCCTCTGACCTTTTTGgtaacattatttcatgttCAGTATTTAATGTGTATTCATGTTTTGTTAACTTGCTTAACATAATTATTGTATCTTTAGTGTTTTGAAATGACGCATGCCTGCATTGTGGTCTCTGGTGTATGTTCAAGTAGCTCTCTAACGGTCACAAGAGCCTTGCTGCATTAAACATCGATGTACACCTCTTTTTAATCTGTGGATGTAAGTCCTTTGAAAATGGCTTTTATAGTTCTCGCTAATATCAGCAATAAGTATTTGATTGAATGTCTTCAGTCATCAAGATTACTTGTCCATGTGACAGCTGCATTTTGACAGGATCGTGCATCTGATTTCTTTTTAACCgtaaatctttattttgtctaTGCATCGTTTTTTTTcggggttttttgtttgtttgttttaacatcAGAAGCATACAATCATGTCTTACATGCACTCGTTTCAGGTTGGGTTTGTGGCCTTTGAGCTTTGCATCCATTGAATGTCATTCTGGATTCTTGTTTAATTCATTGACTTCACTGCATGTTGTTCGTACTCGCTTGAGCTGTTAAACTATTTaatgtgaatttcttttttttcttttttttattgtttaaaaattcaaTTGAATGGTTGTTTTATGCCATATGGTCGTCGACCTCGTCCCTTGACTTAAATGCGTCCAAAATCTATACCATCTGAACCATTAAAGGAGTTGAAAACT
>XM_043225456.1
CACCGGCAGGAACTGAATCAGCAGCGGCGCGTTTACGCTCTTGAGTCACTCCAGCGCTGCCGACTGTCGGGATGTGACCCCGGAACAGGACGCCTCCTTATACACAATACAGCTCTCAGATACAACAAAAACGACAGAATCCTGGACCAGGAGAGCAGTGCGTCAGGAGCAGGGGGGATGAACCGAGAGGAAGCCCCTGGCAAGTCTCCTGAGGAGATGTACATCCAGCAGAAGGTGCGGGTGCTGCTCATGCTCAAGAAAATGGGATCAAATCTGACACCAAACGAGGAAGCGTTTCTGCGGAATTATGCAGGTGTGGTGCACAGCCAGATGAGTCAGTTGCCACAGCACCCTATTGACCAGGGAGCTGAGGATGTGGTGATGGCCTTTTCAAGATCAGAGACCGAGGACAGGAGACAGTGACCTCTCGCCATGCCGAGTCACTACAGctgaacacaacacaacacTGTTGACTGATGGAGAGGGCGGAGCCTGAGATGAGAGAGGGGCCGGGCTCTGCTGCATGCCAGTTGCCCCACTTCCCTTCTCTTCCCCATTCCCCTCTTCTTCCTCACACTAACTGTTACACTATCGGGCCCTGCGGCCGCACTACCTGATGACTTATAGCAAACGAGTCTGAAAGAGTCCTGGCGGGTAAATATTCGATTTGGGTTTTCAAGTTTCGTTTTTTGCATCATCCTTCCGTAAATGGCGTTTTATATTTGTTCCCATGAGAGACTTAATGGACCAAGAGCTTCATTTGTCTGGTCAAACTACGAAACAATATAAATCGCCTCATGGGTTACGTTATTACAGACGATTTTCggtttctttttctgtgtatGTCGTTTCTTGTTTTAATTGTCCACAGGATCCTGCAggtagactttttttttgtttttgttttttttttgtttactttattattttcaggGTTTTTGGTTGTTTAGTAGTTTTTCGCGTCgtaatttcttcaaaatagcatttaatgTTGTTGCGGAGGATACCGAATTGTCAAAATGGACGAGGCCCGtacacaagcacacactcacagaaCGATGTACACAAATGACCTGATGTTTCATGATCTTTTTTTCGATGTTTGGATTAATGTGAAATTTCATAgccttttttttgtacagaacGTATGAAAAAGTAGAAAAGTGAACGAGTTGTGCCAACTGtggttttatgtaaaatatttctaaaggtATCTAATGAATGTCTTAGgtccttatttattttttcaatgtcTTAAAATGTAGACGAACGCAGACCCCTTTTAAACTTCAATTCTGAATTGTAACCGCGTTTTAGTACAAACgattttaaaaactcaaataacGACAAATTTCCACATCAGATGAAAAGCCTAAGCCTTAAGCGTTGTAACAGGACGTGCCGTACTCAGATGTGGGTATGTGTCAGCATATATTTGACCGTCTGATTCAGTGGTGCTAGTGAAACACACGTTTTTAGTTATTCTGATTGAAGTCGAAGATAAATATAAGCTTGTGTGAATTTTAAAGGACGCTAAACATCTCGCGTCGACTTAATGAAaaccaaacctttttttctatTAGGAGTTTTGTGTTTTGGCCTCTGACCTTTTTGgtaacattatttcatgttCAGTATTTAATGTGTATTCATGTTTTGTTAACTTGCTTAACATAATTATTGTATCTTTAGTGTTTTGAAATGACGCATGCCTGCATTGTGGTCTCTGGTGTATGTTCAAGTAGCTCTCTAACGGTCACAAGAGCCTTGCTGCATTAAACATCGATGTACACCTCTTTTTAATCTGTGGATGTAAGTCCTTTGAAAATGGCTTTTATAGTTCTCGCTAATATCAGCAATAAGTATTTGATTGAATGTCTTCAGTCATCAAGATTACTTGTCCATGTGACAGCTGCATTTTGACAGGATCGTGCATCTGATTTCTTTTTAACCgtaaatctttattttgtctaTGCATCGTTTTTTTTcggggttttttgtttgtttgttttaacatcAGAAGCATACAATCATGTCTTACATGCACTCGTTTCAGGTTGGGTTTGTGGCCTTTGAGCTTTGCATCCATTGAATGTCATTCTGGATTCTTGTTTAATTCATTGACTTCACTGCATGTTGTTCGTACTCGCTTGAGCTGTTAAACTATTTaatgtgaatttcttttttttcttttttttattgtttaaaaattcaaTTGAATGGTTGTTTTATGCCATATGGTCGTCGACCTCGTCCCTTGACTTAAATGCGTCCAAAATCTATACCATCTGAACCATTAAAGGAGTTGAAAACTG
>XM_043225457.1
GCGTTTACGCTCTTGAGTCACTCCAGCGCTGCCGACTGTCGGGATGTGACCCCGGAACAGGACGCCTCCTTATACACAATACAGCTCTCAGATACAACAAAAACGACAGAATCCTGGACCAGGAGAGTGCGTCAGGAGCAGGGGGGATGAACCGAGAGGAAGCCCCTGGCAAGTCTCCTGAGGAGATGTACATCCAGCAGAAGGTGCGGGTGCTGCTCATGCTCAAGAAAATGGGATCAAATCTGACACCAAACGAGGAAGCGTTTCTGCGGAATTATGCAGGTGTGGTGCACAGCCAGATGAGTCAGTTGCCACAGCACCCTATTGACCAGGGAGCTGAGGATGTGGTGATGGCCTTTTCAAGATCAGAGACCGAGGACAGGAGACAGTGACCTCTCGCCATGCCGAGTCACTACAGctgaacacaacacaacacTGTTGACTGATGGAGAGGGCGGAGCCTGAGATGAGAGAGGGGCCGGGCTCTGCTGCATGCCAGTTGCCCCACTTCCCTTCTCTTCCCCATTCCCCTCTTCTTCCTCACACTAACTGTTACACTATCGGGCCCTGCGGCCGCACTACCTGATGACTTATAGCAAACGAGTCTGAAAGAGTCCTGGCGGGTAAATATTCGATTTGGGTTTTCAAGTTTCGTTTTTTGCATCATCCTTCCGTAAATGGCGTTTTATATTTGTTCCCATGAGAGACTTAATGGACCAAGAGCTTCATTTGTCTGGTCAAACTACGAAACAATATAAATCGCCTCATGGGTTACGTTATTACAGACGATTTTCggtttctttttctgtgtatGTCGTTTCTTGTTTTAATTGTCCACAGGATCCTGCAggtagactttttttttgtttttgttttttttttgtttactttattattttcaggGTTTTTGGTTGTTTAGTAGTTTTTCGCGTCgtaatttcttcaaaatagcatttaatgTTGTTGCGGAGGATACCGAATTGTCAAAATGGACGAGGCCCGtacacaagcacacactcacagaaCGATGTACACAAATGACCTGATGTTTCATGATCTTTTTTTCGATGTTTGGATTAATGTGAAATTTCATAgccttttttttgtacagaacGTATGAAAAAGTAGAAAAGTGAACGAGTTGTGCCAACTGtggttttatgtaaaatatttctaaaggtATCTAATGAATGTCTTAGgtccttatttattttttcaatgtcTTAAAATGTAGACGAACGCAGACCCCTTTTAAACTTCAATTCTGAATTGTAACCGCGTTTTAGTACAAACgattttaaaaactcaaataacGACAAATTTCCACATCAGATGAAAAGCCTAAGCCTTAAGCGTTGTAACAGGACGTGCCGTACTCAGATGTGGGTATGTGTCAGCATATATTTGACCGTCTGATTCAGTGGTGCTAGTGAAACACACGTTTTTAGTTATTCTGATTGAAGTCGAAGATAAATATAAGCTTGTGTGAATTTTAAAGGACGCTAAACATCTCGCGTCGACTTAATGAAaaccaaacctttttttctatTAGGAGTTTTGTGTTTTGGCCTCTGACCTTTTTGgtaacattatttcatgttCAGTATTTAATGTGTATTCATGTTTTGTTAACTTGCTTAACATAATTATTGTATCTTTAGTGTTTTGAAATGACGCATGCCTGCATTGTGGTCTCTGGTGTATGTTCAAGTAGCTCTCTAACGGTCACAAGAGCCTTGCTGCATTAAACATCGATGTACACCTCTTTTTAATCTGTGGATGTAAGTCCTTTGAAAATGGCTTTTATAGTTCTCGCTAATATCAGCAATAAGTATTTGATTGAATGTCTTCAGTCATCAAGATTACTTGTCCATGTGACAGCTGCATTTTGACAGGATCGTGCATCTGATTTCTTTTTAACCgtaaatctttattttgtctaTGCATCGTTTTTTTTcggggttttttgtttgtttgttttaacatcAGAAGCATACAATCATGTCTTACATGCACTCGTTTCAGGTTGGGTTTGTGGCCTTTGAGCTTTGCATCCATTGAATGTCATTCTGGATTCTTGTTTAATTCATTGACTTCACTGCATGTTGTTCGTACTCGCTTGAGCTGTTAAACTATTTaatgtgaatttcttttttttcttttttttattgtttaaaaattcaaTTGAATGGTTGTTTTATGCCATATGGTCGTCGACCTCGTCCCTTGACTTAAATGCGTCCAAAATCTATACCATCTGAACCATTAAAGGAGTTGAAAACTG

Function

symbol description
ctnnbip1 Predicted to enable beta-catenin binding activity. Predicted to be involved in negative regulation of Wnt signaling pathway. Predicted to be part of beta-catenin destruction complex. Predicted to be active in cytosol and nucleus. Is expressed in central nervous system and optic tectum. Orthologous to human CTNNBIP1 (catenin beta interacting protein 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0030178 negative regulation of Wnt signaling pathway biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0001658 branching involved in ureteric bud morphogenesis biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0008013 beta-catenin binding molecular_function

KEGG:

id description
K04493 ICAT, CTNNBIP1; beta-catenin-interacting protein 1 (inhibitor of beta-catenin and Tcf-4)

RNA

RNA id representative length rna type GC content exon number start site end site
TU230977 False 2275 lncRNA 0.40 4 9079533 9097263
XM_043225456.1 True 2315 mRNA 0.41 4 9079532 9097302
XM_043225457.1 False 2284 mRNA 0.40 4 9079532 9097274

Neighbor

gene id symbol gene type direction distance location
clstn1 clstn1,LOC107718806,LOC107681971 coding downstream 16631 9029720 ~ 9062901 (-)
nmnat1 nmnat1 coding downstream 53102 9023008 ~ 9026430 (-)
LOC122328502 rbp7a,nmnat1-rbp7a,LOC107708837,LOC107681992,LOC107695774,LOC107586559,LOC107580544 coding downstream 58451 9019526 ~ 9021081 (-)
ube4b ube4b,LOC107570768,LOC107681967,LOC107718816,LOC107586519,LOC107695775 coding downstream 60550 8999326 ~ 9018982 (-)
kif1b kif1b,LOC107681965,LOC107695777,LOC107716234,LOC106522667 coding downstream 82026 8934480 ~ 8997506 (-)
pik3cd pik3cd,LOC107708832,LOC107718809,LOC107681979,LOC107695767 coding upstream 1971 9099273 ~ 9118072 (-)
foxl2l zgc:194189,LOC107570831,LOC107708788,LOC107681978,LOC107695725,LOC107586555,LOC107718823 coding upstream 23570 9120872 ~ 9122731 (-)
tmem201 tmem201,LOC107681977,LOC107695766,LOC107718817 coding upstream 26698 9124000 ~ 9135259 (-)
slc25a33 slc25a33,LOC107708828,LOC107695765,LOC107681985 coding upstream 38113 9135415 ~ 9142320 (-)
camta1a camta1a,LOC107708820,LOC107570946,LOC107656552 coding upstream 118483 9215785 ~ 9516716 (-)
LOC122329247 NA non-coding downstream 6588 9070384 ~ 9072944 (-)
G155933 NA non-coding downstream 450429 8628699 ~ 8629103 (-)
G155825 NA non-coding downstream 453890 8624926 ~ 8625642 (-)
G155803 NA non-coding downstream 546605 8526402 ~ 8532927 (-)
G155759 NA non-coding downstream 696925 8307279 ~ 8382607 (-)
G155968 NA non-coding upstream 55778 9153080 ~ 9153502 (-)
G155979 NA non-coding upstream 91211 9188513 ~ 9188897 (-)
G156051 LOC107708813,LOC107656547,LOC107571009,LOC107756377 non-coding upstream 504660 9601962 ~ 9602477 (-)
G156054 NA non-coding upstream 510186 9607488 ~ 9607948 (-)
G156056 NA non-coding upstream 514948 9612250 ~ 9612596 (-)
sst6 LOC107681964,LOC107571825,LOC107695779,LOC107570713,LOC107681961 other downstream 152781 8921564 ~ 8926751 (-)
c23h1orf127 LOC107708840,LOC107570680 other downstream 159762 8913062 ~ 8919770 (-)
G155827 NA other downstream 451141 8625758 ~ 8628391 (-)
G155807 NA other downstream 527555 8545394 ~ 8551977 (-)
G155596 sox18,LOC107727030,LOC107681403,LOC107551552,LOC107666636,LOC107705673,LOC107571663 other downstream 1801209 7276448 ~ 7278323 (-)
ccdc187 LOC107708822,LOC107570908,LOC107718813,LOC107656553,LOC107695760,LOC107586514 other upstream 98008 9195310 ~ 9209964 (-)
hmgn3 hmgn3,LOC107756386,LOC107671890 other upstream 704483 9801785 ~ 9808369 (-)
zgc:153284 LOC107701733,LOC107571300,LOC107756391,LOC107549061,LOC107708783 other upstream 734507 9831809 ~ 9833682 (-)
ankrd52a ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831,LOC107723718 other upstream 1121171 10218473 ~ 10385967 (-)
LOC122329224 NA other upstream 1258639 10355941 ~ 10359786 (-)

Expression


Co-expression Network