LOC122328781 (pifo)


Basic Information

Item Value
gene id LOC122328781
gene name pifo
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10329851 ~ 10363818 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU231344
GGACAGCCAATCGGAACACGGGGTGTGCGCCTGGGCGTGGCCTCGTTGTGGCTCTGTGGAAAATTCGATGTGCGCGGCATCGAGACTctttataatttgaaaaatgaagTTCAAGACGATAGCGTCCATCGTTTGGCATCGCCAGCAGACAGAATAAAGACACGTTTGCTCAGtgaatgCGGGATGAAGAGCGACCCCAGCACTGCAAAGATCTGTAGTCAcaaaacaggaagaggaagtctATGAACCCCTGATGCGCCTTCCCATGATTCTACAGCACCTCTTGTTTTCTTGTAATCATAAAGCTCTTTATC
>XM_043224717.1
gcgtgcgtgcgtggtTGGCCTAGACTACTTGGCGTGGCAAAGATAGGATGTTACGCAGTTCTTATTTACAACCCAGTGTGCTTCGCCCTGACCCGTGTAATGTTTTCATCTCggtcagacagacagaataCCGTCTAACAGtgaatgCGGGATGAAGAGCGACCCCAGCACTGCAAAGGAAACGCATAATTTCATTGATCGAACGACTTCTGGATACATCGGAATTCCATCTGATCCACATCATCAGCATTCGTTTGCACCTGGATACCATGGTAACAAGTAAACATCAGGACGCTATGACGACACGGGGCGCAGCTCCACGGGTCGCGTTCGGCAGCTGCCAGAAACGCCTGATGTTTCCAATGCACTTTGCGCCTGATCGCATGGGCAATGAAATGCTCGCGCTCCACGGCTCCACAGAACTAGGACCCGGATGTTACGACAACCACACGGTGGGCACTCTTACATATGAGCTCCAACACAGACCTGAGAGCAAGAGGGGATATGTGTTTGCAGCGCGCACTGCACCACGCTTTTTGCCTCCAGTTAAAACGGCCACCCCTTCGCCAGAGAAATACCAGCAAGACTGGACTCGGTCTAAAGTGTGTCCTCCTGGAAAAGCTCCCTTCAATAGTACCACTGCAAAATTCAAACATCCAAACACAGACTCCAGCCCTggTCCAGGGGCATATGTTCATGGCAGCATCCAAAGCAAAAAGGTGTCATGGCCTATGAAATTCACTCCAGACTGGACAAAAGTGCCATCGCTGGAGAGAAGAGCACTGCGTACAGAGCTCTACCATGACAAAGAGTTTAGGAAACAGAGGAACAGGGTGGCTTATCTAAGCTTGTTTTACTGATCACTCGAACTACCACAAGAATTCAGCGTGACtatcaaatgcataaaaacattaaagatttATACTTCCTATTTCA

Function

symbol description
pifo Enables cytoskeletal protein binding activity and enzyme binding activity. Involved in positive regulation of kinase activity. Predicted to be located in trans-Golgi network. Predicted to be active in ciliary basal body.

NR:

description
PREDICTED: protein pitchfork

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU231344 False 314 lncRNA 0.49 3 10329851 10335225
XM_043224717.1 True 936 mRNA 0.49 9 10330411 10363818

Neighbor

gene id symbol gene type direction distance location
LOC122329250 si:dkey-261h17.1 coding upstream 7844 10316085 ~ 10322007 (+)
LOC122329223 NA coding upstream 72623 10247911 ~ 10257228 (+)
taf8 taf8,LOC107723763,LOC107549030,LOC107756368,LOC107671856,LOC107594013,LOC107701755 coding upstream 86010 10240311 ~ 10243841 (+)
slc39a5 slc39a5,LOC107723731,LOC107549043,LOC107756408 coding upstream 112250 10212843 ~ 10217601 (+)
zgc:56699 zgc:56699,LOC107671838,LOC107756366,LOC107701712,LOC107549049 coding upstream 205640 10121748 ~ 10124211 (+)
LOC122329277 ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831 coding downstream 4635 10368453 ~ 10381390 (+)
LOC122328600 pcmtd2,LOC107708816,LOC107570992,LOC107701717,LOC107756374,LOC107656550,LOC108433859 coding downstream 65459 10429277 ~ 10432503 (+)
LOC122329231 LOC107656551,LOC107708819,LOC107570956 coding downstream 83990 10447808 ~ 10449331 (+)
LOC122328734 sdcbp2,LOC107657068,LOC107672005 coding downstream 191458 10555276 ~ 10566657 (+)
LOC122328564 LOC107707753,LOC107672006,LOC107603149,LOC107657067,LOC107559477,LOC107747970 coding downstream 283145 10646963 ~ 10658747 (+)
LOC122328771 NA non-coding upstream 73445 10254786 ~ 10256406 (+)
G156182 grasp,LOC107671830,LOC107723769,LOC107594022,LOC107549045 non-coding upstream 165875 10161998 ~ 10163976 (+)
G156168 nr4a1,LOC107671891,LOC107723761,LOC107572787,LOC107756405,LOC107701750,LOC107549046 non-coding upstream 184390 10134855 ~ 10145461 (+)
G156142 NA non-coding upstream 335198 9994446 ~ 9994653 (+)
G156109 NA non-coding upstream 356317 9880762 ~ 9973534 (+)
G156169 NA non-coding downstream 23142 10386960 ~ 10387500 (+)
G156171 NA non-coding downstream 24050 10387868 ~ 10388626 (+)
G156387 LOC107747988,LOC107671949,LOC107707743,LOC107603135 non-coding downstream 156324 10520142 ~ 10520767 (+)
G156401 NA non-coding downstream 209396 10573214 ~ 10655710 (+)
G156398 NA non-coding downstream 303043 10666861 ~ 10674148 (+)
plagx plagx,LOC107723745,LOC107572778,LOC107756402,LOC107671865,LOC107549050,LOC107701746 other upstream 240033 10070780 ~ 10089818 (+)
G156081 phip,LOC107656532,LOC107708770,LOC107549027 other upstream 560231 9683746 ~ 9769620 (+)
G155927 zgc:194189,LOC107570831,LOC107708788,LOC107681978,LOC107695725,LOC107586555,LOC107718823 other upstream 1207458 9120884 ~ 9122393 (+)
lzic lzic,LOC107708836,LOC107718820,LOC107681991,LOC107570802,LOC107695771,LOC107586557 other upstream 1228479 8941031 ~ 9101372 (+)
G155799 NA other upstream 1841210 8488086 ~ 8488641 (+)
LOC122328383 tbx15,tbx18,LOC107712261,LOC107708785,LOC107656541 other downstream 51845 10415663 ~ 10427162 (+)
LOC122328447 LOC107603155,LOC107707751,LOC107672009 other downstream 151161 10514979 ~ 10518751 (+)
LOC122329061 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other downstream 187279 10551097 ~ 10554720 (+)
G156399 LOC107707753,LOC107672006,LOC107603149 other downstream 199526 10563344 ~ 10572246 (+)
G156414 LOC107707743,LOC107747988,LOC107671949,LOC107559475 other downstream 334980 10698798 ~ 10700895 (+)

Expression


Co-expression Network