zgc:153284 (LOC107701733,LOC107571300,LOC107756391,LOC107549061,LOC107708783)


Basic Information

Item Value
gene id zgc:153284
gene name LOC107701733,LOC107571300,LOC107756391,LOC107549061,LOC107708783
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 9831809 ~ 9833682 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU231375
CTTGAGTTGGCAGAGATTACCTTTTGATTTAAAGGTTTAAACAACGAACTGCTTCTTCAGCCACTTTTATTCTCAACAAAACTTTTAGCACGTTCAGAAGATGCCCGTCACAGTGTATTTCAGCAGTGTGAGTGGCTCTAGAGAGGTGAAGCAACATCAGGCACACATCCTGCAATTCCTGGATTCCAAGAATATCAAGTACTTTGTTGTGGACATCGCTGAAAGTGGTGCTTTGAAGGAGGAGATGAGGAAGAAAGTGGGAAACCCCGCAGCTTTGCCTCCTCAGGTCTTTAATGGAGACAAATATTGTGGGgACTATCAGAAATTTTCTGATGCGGTGGAGGATGGAAAAGCAGAGGCATTCTTCAAACTCTGAACTACTATTGGCACACTTCACTAaatccttgtgtatttaagatTATA
>TU231376
gtgtgtgttaggtggGGCTGTCAAGGTGTCAAAACTTGCTTTCCTGGTCCTTGAGTTGGCAGAGATTACCTTTTGATTTAAAGGTTTAAACAACGAACTGCTTCTTCAGCCACTTTTATTCTCAACAAAACTTTTAGCACGTTCAGAAGATGCCCGTCACAGTGTATTTCAGCAGTGTGAGTGGCTCTAGAGAGGTGAAGCAACATCAGGCACACATCCTGCAATTCCTGGATTCCAAGAATATCAAGTACTTTGTTGTGGACATCGCTGAAAGTGGTGCTTTGAAGGAGGAGATGAGGAAGAAAGTGGGAAACCCCGCAGCTTTGCCTCCTCAGGTCTTTAATGGAGACAAATATTGTGGGgACTATCAGAAATTTTCTGATGCGGTGGAGGATGGAAAAGCAGAGGCATTCTTCAAACTCTGAACTACTATTGGCACACTTCACTAaatccttgtgtatttaagatTATA
>XM_043224553.1
CTTGCTTTCCTGGTCCTTGAGTTGGCAGAGATTACCTTTTGATTTAAAGGTTTAAACAACGAACTGCTTCTTCAGCCACTTTTATTCTCAACAAAACTTTTAGCACGTTCAGAAGATGCCCGTCACAGTGTATTTCAGCAGTGTGAGTGGCTCTAGAGAGGTGAAGCAACATCAGGCACACATCCTGCAATTCCTGGATTCCAAGAATATCAAGTACTTTGTTGTGGACATCGCTGAAAGTGGTGCTTTGAAGGAGGAGATGAGGAAGAAAGTGGGAAACCCCGCAGCTTTGCCTCCTCAGGTCTTTAATGGAGACAAATATTGTGGGgACTATCAGAAATTTTCTGATGCGGTGGAGGATGGAAAAGCAGAGGCATTCTTCAAACTCTGAACTACTATTGGCACACTTCACTAaatccttgtgtatttaagatTATATATGTTAAgacattttacattgtttaataataataataataataataataataataaaaaagggaTTTTCTATCAAGCGTATCTCTGCTACATTATGCATCAGTACATACAGTATCACCTTCCATATTTGTCCACTGGGGTGCAGTAGTGTCTTGAGTACCTCAAATATATGAACTATTGGTGCATTTAATCAACTTGATGCATTTCAAGCATTGattcttcttaaaaattctTCATTGTTCTGacttatcttttaaaaatcagaaTTGATGtaatcaaaattttatttcaattaaactaatatatacataatactaTT

Function

NR:

description
SH3 domain-binding glutamic acid-rich-like protein 3

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0009055 electron transfer activity molecular_function
GO:0015035 protein disulfide oxidoreductase activity molecular_function

KEGG:

id description
K23740 SH3BGR; SH3 domain-binding glutamic acid-rich protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU231375 False 423 TUCP 0.42 3 9832128 9833633
TU231376 False 472 TUCP 0.43 3 9832128 9833682
XM_043224553.1 True 757 mRNA 0.35 3 9831809 9833648

Neighbor

gene id symbol gene type direction distance location
lca5 LOC107571182,LOC107708802,LOC107671846 coding downstream 9512 9812001 ~ 9822297 (-)
LOC122328653 phip coding downstream 33392 9767539 ~ 9798417 (-)
si:dkey-261l7.2 si:dkey-261l7.2,LOC107708806,LOC107571115,LOC107549066 coding downstream 67011 9761699 ~ 9764798 (-)
LOC122328660 LOC107656533,LOC107571650,LOC107756347,LOC107708771,LOC107549029,LOC107701694,LOC101887148 coding downstream 157172 9662413 ~ 9674637 (-)
osbpl2a osbpl2a,LOC107571031,LOC107708810,LOC107656546,LOC107549069,LOC107756379,LOC107701722,LOC108433898 coding downstream 198442 9622453 ~ 9633367 (-)
eya4 eya4,LOC107671847,LOC107756388,LOC107701730,LOC107571227 coding upstream 3753 9837435 ~ 9865787 (-)
tcf21 tcf21,LOC107571274,LOC107723756,LOC107756361,LOC107671849,LOC107701707,LOC107549058 coding upstream 49755 9883437 ~ 9884854 (-)
slc2a12 slc2a12,LOC107571322,LOC107701735,LOC107549056,LOC107671860 coding upstream 75106 9908788 ~ 9917655 (-)
sgk1 sgk1,LOC107571333,LOC107723736,LOC107549055,LOC107756394,LOC107701736 coding upstream 86365 9920047 ~ 9941008 (-)
aldh8a1 aldh8a1,LOC107723725,LOC107671839,LOC107756363,LOC107701738 coding upstream 129312 9962994 ~ 9968091 (-)
G156245 NA non-coding downstream 684 9782108 ~ 9831125 (-)
G156235 NA non-coding downstream 16315 9678261 ~ 9815494 (-)
G156056 NA non-coding downstream 219213 9612250 ~ 9612596 (-)
G156054 NA non-coding downstream 223861 9607488 ~ 9607948 (-)
G156051 LOC107708813,LOC107656547,LOC107571009,LOC107756377 non-coding downstream 229332 9601962 ~ 9602477 (-)
LOC122328702 NA non-coding upstream 34238 9867920 ~ 9877168 (-)
G156261 NA non-coding upstream 117461 9951143 ~ 9952031 (-)
G156264 NA non-coding upstream 182774 10016456 ~ 10017421 (-)
G156278 NA non-coding upstream 218844 10052526 ~ 10053549 (-)
G156283 NA non-coding upstream 224329 10058011 ~ 10059303 (-)
hmgn3 hmgn3,LOC107756386,LOC107671890 other downstream 23440 9801785 ~ 9808369 (-)
ccdc187 LOC107708822,LOC107570908,LOC107718813,LOC107656553,LOC107695760,LOC107586514 other downstream 621845 9195310 ~ 9209964 (-)
ctnnbip1 ctnnbip1 other downstream 734507 9079532 ~ 9097302 (-)
sst6 LOC107681964,LOC107571825,LOC107695779,LOC107570713,LOC107681961 other downstream 905058 8921564 ~ 8926751 (-)
c23h1orf127 LOC107708840,LOC107570680 other downstream 912039 8913062 ~ 8919770 (-)
ankrd52a ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831,LOC107723718 other upstream 384791 10218473 ~ 10385967 (-)
LOC122329224 NA other upstream 522259 10355941 ~ 10359786 (-)
LOC122328779 taf8,LOC107723763,LOC107756368,LOC107549030,LOC107671856,LOC107594013,LOC107701755 other upstream 530223 10363905 ~ 10367369 (-)
LOC122328798 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other upstream 841998 10675680 ~ 10678150 (-)
G156746 NA other upstream 1267062 11100744 ~ 11105223 (-)

Expression


Co-expression Network