LOC122328779 (taf8,LOC107723763,LOC107756368,LOC107549030,LOC107671856,LOC107594013,LOC107701755)


Basic Information

Item Value
gene id LOC122328779
gene name taf8,LOC107723763,LOC107756368,LOC107549030,LOC107671856,LOC107594013,LOC107701755
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10363905 ~ 10367369 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU231532
TACAGTTAGTGGGGGAATGCAGGACGCACAATGAGTTTTCTTTTGCAGAGCGCTAAACACCACTAGATGAAAAACCACTAGAGTTAAAAATGGCAGACTCTGTAATGATGGGGAGCGCGTCTTTAAACTCCGGAAACCGCTCTGGGAGCAGTAAGACCAGCACAAGTCCTACAGAGAACTATCAGCTGGCTCGGAGACGCACACTGCAGGTGGTGGTCAGCTCTCTGCTGACCGAGTGTGGCTTTGAGAGCGCTGAGAAAGCAGCGGTGGAGACCCTTACTGAGATGATGCAGAGCTATATAACTGAGGTTGGCCGTTGTGCGAAGGCAacctgtgagcacacagctagAAGCACCCCTACACTCTCTGATGTGGTCATCTCACTGGTCGAAATGGGCTTTAACGTGGATACTCTTCCAGTGTATGCCAAAAGATCCCAAAGGATGGTCATAACTGCACCTCCAATAACAAATGCTCCAGTCGCCCCAAAAGCCCTCATGGCTGGACAGAAGCGCACTCATCCAACATACATCCCCAGCCACTTCCCAGAATTCCCAGATCCTCATACATACATCAAAACACCaACTTTTCGAGAGCCTGTGTCAGATTACCAGGTGGTGAGAGAGAAGGCGGCATCACAGAGGAGAGATGTGGAGCGCGCTCTCAC
>XM_043224715.1
GAGCGCTAAACACCACTAGATGAAAAACCACTAGAGTTAAAAATGGCAGACTCTGTAATGATGGGGAGCGCGTCTTTAAACTCCGGAAACCGCTCTGGGAGCAGTAAGACCAGCACAAGTCCTACAGAGAACTATCAGCTGGCTCGGAGACGCACACTGCAGGTGGTGGTCAGCTCTCTGCTGACCGAGTGTGGCTTTGAGAGCGCTGAGAAAGCAGCGGTGGAGACCCTTACTGAGATGATGCAGAGCTATATAACTGAGGTTGGCCGTTGTGCGAAGGCAacctgtgagcacacagctagAAGCACCCCTACACTCTCTGATGTGGTCATCTCACTGGTCGAAATGGGCTTTAACGTGGATACTCTTCCAGTGTATGCCAAAAGATCCCAAAGGATGGTCATAACTGCACCTCCAATAACAAATGCTCCAGTCGCCCCAAAAGCCCTCATGGCTGGACAGAAGCGCACTCATCCAACATACATCCCCAGCCACTTCCCAGAATTCCCAGATCCTCATACATACATCAAAACACCaACTTTTCGAGAGCCTGTGTCAGATTACCAGGTGGTGAGAGAGAAGGCGGCATCACAGAGGAGAGATGTGGAGCGCGCTCTCACACGCTTTATGGCCAAGACAGGAGAGACGCAAAGTCTTTTTAAGGACGACATCAGTGCATTTCCTTTGATCGCAGCAAAGTCGAGCACCATCCCTTACCTGAGTGCCCTGCTGCCCTCTGAACTAGAGCTTCAGACACTGGAAGAGACGGATTCATCTGAGCAGGACGACCAGACAGATACAGAGAACAACCCTAATAACATCATGCAGGATGATCAAAGTGCAGATAAGGAGAATGTAGTGCTGCCGCCTGGTGGTGTTGTGCCTACAGGGAAGGCCAATGAGGAAAACATGATCGACAACCCATATCTTCGGCCAGTCAAAAAGCCCAAAGTGagaaggaaaaaatgaaaactgatatATTGACTCGGCTACTCAGCTGATTAGGATGGATGAAAACTTCTTAACACGTGCTGAAAACATTGTGCCCCTTGAAGTTATAGCTAACATACGAGGAACCAGAGTCTTCTACAAATGTAATTTGGAAACCTGCAGCAGTCCATCGTGTTACTGACGTTTGATTCTTATAGAATGACAGACTGTTCAGAACATCTGAGAAATATTAGATGAATTTCAAGCAGTCAACTCCTCAAAAGAGTAACACAGCTTACAGTTTAATTTTgatagtttgttttaataagccttcccttaaaatataatttacaacaCACCAGAAACGTGGCATTCTCTTTTGATTTGAGTATCTGTTATTCATTTGTGATtggtaataaatgtttttcattgtttattttaagcattgtttcaaaagtacaaaatgtttcaaaagtgGAAAATTAAACCAGACCGTGATGGTGTAAACATC

Function

symbol description
taf8 Predicted to enable protein heterodimerization activity. Predicted to be involved in transcription initiation from RNA polymerase II promoter. Predicted to act upstream of or within cell differentiation. Predicted to be located in cytoplasm and nucleus. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF8 (TATA-box binding protein associated factor 8).

NR:

description
PREDICTED: transcription initiation factor TFIID subunit 8

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K14649 TAF8; transcription initiation factor TFIID subunit 8

RNA

RNA id representative length rna type GC content exon number start site end site
TU231532 False 667 TUCP 0.51 6 10365543 10367369
XM_043224715.1 True 1441 mRNA 0.45 9 10363905 10367322

Neighbor

gene id symbol gene type direction distance location
LOC122328780 NA coding downstream 17813 10343250 ~ 10346092 (-)
LOC122328770 pifo coding downstream 83366 10243928 ~ 10280539 (-)
rnf41 rnf41,LOC107723732,LOC107756409 coding downstream 151478 10204039 ~ 10212427 (-)
dgkaa dgkaa,dgka,LOC107549042,LOC107671885,LOC107701752,LOC107594021,LOC107756407 coding downstream 161098 10177186 ~ 10202807 (-)
tamalin grasp,LOC107723769,LOC107594022,LOC107549045,LOC107671830 coding downstream 187863 10162782 ~ 10176042 (-)
LOC122328599 LOC107570968,LOC107656538,LOC107708815,LOC107756373,LOC107701716,LOC107586510 coding upstream 65395 10432764 ~ 10447218 (-)
LOC122329230 dnajc11a,LOC107708818,LOC107701714,LOC107756372,LOC107586512,LOC107656549,LOC108433830 coding upstream 82116 10449485 ~ 10456918 (-)
LOC122328445 zgc:173570,LOC107657062,LOC107559474,LOC107747974 coding upstream 149347 10516716 ~ 10521072 (-)
LOC122328446 LOC107707743,LOC107671949,LOC107657006,LOC107603135,LOC107559475 coding upstream 154729 10522098 ~ 10525372 (-)
LOC122328736 LOC107672006,LOC107603149,LOC107707753,LOC107657067 coding upstream 201196 10568565 ~ 10582430 (-)
G156341 NA non-coding downstream 12024 10348141 ~ 10351881 (-)
LOC122328389 NA non-coding downstream 69862 10291465 ~ 10294043 (-)
G156313 NA non-coding downstream 246950 10112617 ~ 10116955 (-)
G156283 NA non-coding downstream 304602 10058011 ~ 10059303 (-)
G156278 NA non-coding downstream 310356 10052526 ~ 10053549 (-)
G156364 NA non-coding upstream 19585 10386954 ~ 10388615 (-)
G156452 NA non-coding upstream 173530 10540899 ~ 10542887 (-)
G156459 NA non-coding upstream 300588 10667957 ~ 10675579 (-)
G156468 NA non-coding upstream 329083 10696452 ~ 10696677 (-)
G156469 NA non-coding upstream 331228 10698597 ~ 10700224 (-)
LOC122329224 NA other downstream 4119 10355941 ~ 10359786 (-)
zgc:153284 LOC107701733,LOC107571300,LOC107756391,LOC107549061,LOC107708783 other downstream 530223 9831809 ~ 9833682 (-)
hmgn3 hmgn3,LOC107756386,LOC107671890 other downstream 555536 9801785 ~ 9808369 (-)
ccdc187 LOC107708822,LOC107570908,LOC107718813,LOC107656553,LOC107695760,LOC107586514 other downstream 1153941 9195310 ~ 9209964 (-)
ctnnbip1 ctnnbip1 other downstream 1266603 9079532 ~ 9097302 (-)
LOC122328798 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other upstream 308311 10675680 ~ 10678150 (-)
G156746 NA other upstream 733375 11100744 ~ 11105223 (-)
LOC122328546 rpl10 other upstream 1374031 11741400 ~ 11746620 (-)
LOC122329329 NA other upstream 1377893 11745262 ~ 11745395 (-)
atp2b3b atp2b3b,atp2b3,LOC107737604,LOC107712727,LOC107672007,LOC107593407 other upstream 1396340 11763709 ~ 11857968 (-)

Expression


Co-expression Network