LOC122328383 (tbx15,tbx18,LOC107712261,LOC107708785,LOC107656541)


Basic Information

Item Value
gene id LOC122328383
gene name tbx15,tbx18,LOC107712261,LOC107708785,LOC107656541
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10415663 ~ 10427162 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU231564
TGGCACTTTAACGAATCCCGGCCACTGCCTCGGTGTCTGTGCGCGTTGACAGACCGATGAGACTGTTTTGAATAGACTGTCGCTTCGTTTTCAGCGTCTTTGTCACACCGCCCGTGGTAATTAGCGACCGAAGCGGACTATTTTGACTCGAGGAATGCTAGATTAAGTGCTGTCGCAAATGCACTTCTCGTGAACTTCTTTCTCGACCAATCTGTCTTCTTGGTTTGTTACCATGGCTGAGAAACGACGGTCCCCGTGTACCATGAGCCTCAAAGCGCACGCGTTCTCGGTAGAAGCGCTTATTGGCacggagaaaaaaagaaagctggaGGAGGACAATGAGAACTGCTTTGAGGAGGTAAACGATGTGTCGAACCTGACAGAAAGCCCGCAACCCCGGACTGGGAGAACTTGTCCAAGCACCAGGAGTTGCGAGACAGACTGCGCAAGCGACGAATCCCCGGAGTCTGAGGACGTGTTGTTGGATAGCCCACAACCTGCATCCCAAAGCTCGCAGGTCCTCGTGCAATCAGGCACGAGCTCCGGAGAGGAGATGCGCGTGGACCTGCAAGGCTCAGATTTGTGGAAGCGATTCCACGAGATAGGAACCGAAATGATCATCACCAAAGCCGGCAGGCGAATGTTTCCCGCGATGAGAGTTAAGATTGCGGGACTGGATCCTCATCAACAGTATTATATCGCTATGGATATAGTTCCTGTCGACAACAAACGGTACAGG
>XM_043224055.1
CTGGTTATTGGCACTTTAACGAATCCCGGCCACTGCCTCGGTGTCTGTGCGCGTTGACAGACCGATGAGACTGTTTTGAATAGACTGTCGCTTCGTTTTCAGCGTCTTTGTCACACCGCCCGTGGTAATTAGCGACCGAAGCGGACTATTTTGACTCGAGGAATGCTAGATTAAGTGCTGTCGCAAATGCACTTCTCGTGAACTTCTTTCTCGACCAATCTGTCTTCTTGGTTTGTTACCATGGCTGAGAAACGACGGTCCCCGTGTACCATGAGCCTCAAAGCGCACGCGTTCTCGGTAGAAGCGCTTATTGGCacggagaaaaaaagaaagctggaGGAGGACAATGAGAACTGCTTTGAGGAGGTAAACGATGTGTCGAACCTGACAGAAAGCCCGCAACCCCGGACTGGGAGAACTTGTCCAAGCACCAGGAGTTGCGAGACAGACTGCGCAAGCGACGAATCCCCGGAGTCTGAGGACGTGTTGTTGGATAGCCCACAACCTGCATCCCAAAGCTCGCAGGTCCTCGTGCAATCAGGCACGAGCTCCGGAGAGGAGATGCGCGTGGACCTGCAAGGCTCAGATTTGTGGAAGCGATTCCACGAGATAGGAACCGAAATGATCATCACCAAAGCCGGCAGGCGAATGTTTCCCGCGATGAGAGTTAAGATTGCGGGACTGGATCCTCATCAACAGTATTATATCGCTATGGATATAGTTCCTGTCGACAACAAACGGTACAGATACGTGTACCACAGCTCGAAATGGATGGTAGCGGGAAACGCCGACTCTCCCGTCCCTCCGCGCGTCTATATTCATCCCGATTCGCCTGCTTCCGGTGAGACGTGGATGCGCCAAGTTATAAGCTTCGACAAACTCAAACTGACCAACAACGAGCTCGACGACCAAGGCCATATCATTCTGCACTCTATGCACAAGTACCAGCCCCGTGTCCACGTCATCCGTAAGGAGTGTGGTGAAGAACTCTCACCGGTCAAAGCGGTTCCCACCGGGGACGGTGTCAACGCATTTTCCTTCCCTGAAACTGTCTTCACGACGGTGACTGCATACCAAAACCAACAGATTACCCGTCTAAAGATCGACCGCAACCCATTTGCCAAAGGATTCCGGGACTCAGGGAGAAACAGGACGGGGTTGGAGGCTATAATGGAGACCTATGCTTTCTGGAGACCTCCAGTGAGGACGCTGACATTTGAGGACTTCACGAACATGCAGAAACAGCAAGGAGGGAGCACTGGCACCTCTCCCACTACCTCCAGCACTGGCACTCCATCGCCCTCTGGTGCGACACACCTCCTCTCCCCTTCCTGCTCCCCTCCGACTTTCCATCTGGCACCCAACACCTTCAATGTGGGCTGCAGGGAGAGCCAGCTGTGTAACCTGGGCTTGTCTGAGTACCCCGCATGTGCCAGGAGCAACATGGCTGCCCTGCAGGGCTACGGAGGACTAACCGACGGCTCCTACGGCCGCCTCCAGACCACAGGGGGCGCTGTAACCTCTGCCCAGGCCTCCGATTCCTTCTTGCCTCAGAGGACTTCCTCTCTCATTGCTGCTGGAATGCAGGGAGGGGCTCATGCCTCATTGGCTGCTGGTAACGGCAGCGGCGGCAGTGGTGGAGGCAAGATGGATGCATATGGAAGTCAGCTGGCCTCTTTTCCCGCGTCCCAACTGCAGTACGTTATGCAGGCAGGGTCGAGCTCCGCCTCTGGGTCATCGGCTTCATCCGGCTCCTCCCCTTCCTCCGCCCACATGTTCTCTGGGAGCCATCATCATGTGCAGCAGAGCACATATAACGCCTTTTCCCTTCATAATCCCTACAACCTGTACGGATACAACTTCCCGGCCTCACCGCGCCTGGCTGCCAGCCCAGAGAAACCTCAGGGTGGCTTACTGTGCTCCTCCTCTTCCGCGGGAGCATTCGCCGAACGTCAGTACCTGTCCAACAGCGGCATGGACAGTATGCACATGATCGGCAACCCCGCTGGCAGCCAGCAGGGGGCTGGCAGCTGCGACGGCCGCCAGTATGGCTCGTCTACACAGATGTCCATGCATATGGTTTGAAGCCattgaaaataaaccaaaaacagatcaaaacaccaaacacaaacagctgctgcagttttttttttgctcagctTTACTGGGTTTTCAgagttttattattcaaaatgtctGACACATTGGTGTGAGCAGTTTGCCATTATGACGTTGGTGACACCAGCTGTTCAGTGTGGacttattatacacacacacgccttCGTGTGTGTATCGTCAGACTAAAATGGAGTTGAAGTGTTACTTGGCATCAAAAAGAATGGATATACAAGctaaaaataaccatttcaaGTTGTTGTTGCTGACCCATCTCAACAATGTGCAAAACTGAACTAAATCAACTGAGGtttgatttttacaaaatggaTTCTGATAAGGATTCATATTTGGTGCAATAATGGCCCCTTAAATATCCCACAAGAACAAGAGACAGAACATGAACAAAATGCCCTCATAACTGTGAGCGAATAAGTGTCGTCAGTATTACGTTTTCGTTGTTGATAGTATATATGATGCTTGTTATGAGCTCACTGACTCTATCAGAGATGAGGAGTCTCAGGATGGCAAAGTAAAATCCTCCTGTAATAACAGGGTCTCTGTATGATTCTGACAATCTGTACTGAAATGATAAATCTTTGCCTTTTAGTTTGGAAAAGGCTTAACCATATCCTGAGTGGAACATGACATTTGAGCAATAGTGAATGCACGCAAAGCACATAGGTTTTAAATTGTTGTGTGGATAAAAACCATAGGAAGACAAGGTATATGCTTTGGagtgtttgtaaatgaatatatttaaatgctaagCAATTATATGGCCAGTGTATGTTGAATTTAAATAGTGTGGGAGTAATGAACAATAATGTTTTAGGCTTTTAAGACTGTAAATACAAGTGCCAAGCACATAAAgctcattaaataaacattataagtCCTCTGTatgtttcttgaaaaaaaaaatcaagcatgCTTTGTTGCTTTTGGTTGTGGTTTTAATATGACGTCATGCAGTATATGATGGATGTCAAAACAGAAATGATCATAGATTTGTCTTTCACAACAGAATATTGATCTACATATGtgaatatttatgtatgtttagtTTTACCATACACACAGTTTCTCACATAAAGCAGAAGGATTTAAGTACAAAAACTCaagaaagttgtttttttttgctaatcaATTGCAATCTAACTCATGccctttattttttcctctattATAATCATGGGCTTGAGATaaagagaaagcaaaaaaatatatatttgaaagtcaatatgtgtaaaaataaacgTGTAAAAACAAAGGATTGATCCTGCTGTTCTCTTtgaaataaagaagaaagagaTGAC

Function

symbol description
tbx18 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including morphogenesis of embryonic epithelium; regulation of transcription by RNA polymerase II; and somitogenesis. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including fin bud; medial longitudinal fasciculus; pectoral fin; pericardial region; and proepicardial cluster. Human ortholog(s) of this gene implicated in CAKUT2. Orthologous to human TBX18 (T-box transcription factor 18).
tbx15 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell fate specification and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including cephalic musculature; head mesenchyme; mesenchyme pectoral fin; mesoderm pectoral fin bud; and pharyngeal arch 1. Orthologous to human TBX15 (T-box transcription factor 15).

NR:

description
T-box transcription factor TBX15

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU231564 False 739 TUCP 0.52 3 10415671 10417898
XM_043224055.1 True 3434 mRNA 0.47 9 10415663 10427162

Neighbor

gene id symbol gene type direction distance location
LOC122329277 ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831 coding upstream 34273 10368453 ~ 10381390 (+)
LOC122329250 si:dkey-261h17.1 coding upstream 93656 10316085 ~ 10322007 (+)
LOC122329223 NA coding upstream 158435 10247911 ~ 10257228 (+)
taf8 taf8,LOC107723763,LOC107549030,LOC107756368,LOC107671856,LOC107594013,LOC107701755 coding upstream 171822 10240311 ~ 10243841 (+)
slc39a5 slc39a5,LOC107723731,LOC107549043,LOC107756408 coding upstream 198062 10212843 ~ 10217601 (+)
LOC122328600 pcmtd2,LOC107708816,LOC107570992,LOC107701717,LOC107756374,LOC107656550,LOC108433859 coding downstream 2115 10429277 ~ 10432503 (+)
LOC122329231 LOC107656551,LOC107708819,LOC107570956 coding downstream 20646 10447808 ~ 10449331 (+)
LOC122328734 sdcbp2,LOC107657068,LOC107672005 coding downstream 128114 10555276 ~ 10566657 (+)
LOC122328564 LOC107707753,LOC107672006,LOC107603149,LOC107657067,LOC107559477,LOC107747970 coding downstream 219801 10646963 ~ 10658747 (+)
commd7 commd7,LOC107671961,LOC107603136,LOC107747977,LOC107719919,LOC107563668 coding downstream 338700 10765862 ~ 10772199 (+)
G156171 NA non-coding upstream 27037 10387868 ~ 10388626 (+)
G156169 NA non-coding upstream 28163 10386960 ~ 10387500 (+)
G156217 NA non-coding upstream 69609 10263990 ~ 10346054 (+)
LOC122328771 NA non-coding upstream 159257 10254786 ~ 10256406 (+)
G156182 grasp,LOC107671830,LOC107723769,LOC107594022,LOC107549045 non-coding upstream 251687 10161998 ~ 10163976 (+)
G156387 LOC107747988,LOC107671949,LOC107707743,LOC107603135 non-coding downstream 92980 10520142 ~ 10520767 (+)
G156401 NA non-coding downstream 146052 10573214 ~ 10655710 (+)
G156398 NA non-coding downstream 239699 10666861 ~ 10674148 (+)
G156413 NA non-coding downstream 269140 10696302 ~ 10696558 (+)
G156417 NA non-coding downstream 275567 10702729 ~ 10703093 (+)
LOC122328781 pifo other upstream 51845 10329851 ~ 10363818 (+)
plagx plagx,LOC107723745,LOC107572778,LOC107756402,LOC107671865,LOC107549050,LOC107701746 other upstream 325845 10070780 ~ 10089818 (+)
G156081 phip,LOC107656532,LOC107708770,LOC107549027 other upstream 646043 9683746 ~ 9769620 (+)
G155927 zgc:194189,LOC107570831,LOC107708788,LOC107681978,LOC107695725,LOC107586555,LOC107718823 other upstream 1293270 9120884 ~ 9122393 (+)
lzic lzic,LOC107708836,LOC107718820,LOC107681991,LOC107570802,LOC107695771,LOC107586557 other upstream 1314291 8941031 ~ 9101372 (+)
LOC122328447 LOC107603155,LOC107707751,LOC107672009 other downstream 87817 10514979 ~ 10518751 (+)
LOC122329061 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other downstream 123935 10551097 ~ 10554720 (+)
G156399 LOC107707753,LOC107672006,LOC107603149 other downstream 136182 10563344 ~ 10572246 (+)
G156414 LOC107707743,LOC107747988,LOC107671949,LOC107559475 other downstream 271636 10698798 ~ 10700895 (+)
G156497 trim101,LOC107671958,LOC107560876,LOC107719918,LOC107656995,LOC107747989 other downstream 486742 10913904 ~ 10923988 (+)

Expression


Co-expression Network