LOC122328447 (LOC107603155,LOC107707751,LOC107672009)


Basic Information

Item Value
gene id LOC122328447
gene name LOC107603155,LOC107707751,LOC107672009
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10514979 ~ 10518751 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU231594
CTGGAGAGACGCCGGACTGCAACAGCCATGGCAAATTCTTACCCGTTGTAAATAGTTAATTCCAAGTTTACAATGTTTGGAGTAAAAGTTAACCGTAAGAAAAGTAACTGTGTTTGCGAGCCGTTGACATAGTAGACAGTTTATCCGTTTAAACATGTTTCGTCAGGCTGTTAAGAAACTAGaTACCTTGATACCAGATGCTGGAAAACAACTTGTGATGACAGCAATGTCCACAATTAAATGTGTGGTAGTTGGAGATGGAGCCGTGGGTAAAACCTGCCTTTTGGTTTCTTTTACGAACAAATTCCCATCAGAACCAACAGTGTTTGATAACCAAGCTGCGACTGTAACGTTTGATGGTGAACCATACACCATTAGATTATTTGATGCTGCGGGTATGGTAATAACAATATTCCTAAAGCATTGTCAAATCATCTTAACAGTGTCTCAACAACAGCGGCACAAAAACTGATCCTGACAAAtctaaatattcaatattttgtagGTCAGGATCAATTACGACCCTTATACTATCCCCAAACAGACGTCTTTCTAGTTTGTTTCTCTGTAGTTTCTCTGTcctcttttgaaaatgtaaaagaaaaggtGAGTCTTTCAGTGATCTGTCAGTCATGCGAAGTAATGTGTTTGTTGCTAACAACAGTTCATTTGTAATGCAGTGGGTGCCTGAGATAACTTATCACTCTCCGAAAACCCCCTTTCTGCTGGTTGGGACTCAAATCGACCTTCGAGATGATCCTGTAACTATTGCAAGgcttgcaaaaaacaaacaaaagccaaTCAAACCAGAGACAGCTGAAAAACTAGCCAGAGACTTAAAGGCAGTCAACTATGTTGAATGCTCTGCTCTAACGCAGAAAGGACTCAAGAACGTGTTTGACGAGGCGATATTAGCAGCTCTGGAGCCCCCGGGATCCCAGAAGACATGCGGATGTGTGCTTTTATGAACTGGACAAATCTGGGTGTAAACCAATaggattgttttatttttgtacaggTTTTTAATCAGGAAAGTAACAGTAGCTTTTACTTGacaggtgctttccacatcatTTACCTCGGTACTCATATCACATAGTCAGATGATATGTGTGCAAATTTTGCCTTTAAGACTTTAACGATGCTTCACAACGAAGATATTCAGCTATGGTAGGGTAGAGTGGGGTAAGATGTGCCAGTTCTTATTTGTCTAACAATGAAGGAGATTTTGAAGTAAATACTTTCGTTTGTGTGCCAATGTCTGTCAAAAGCTTAATTTAGAAGACTTTACAGAGCCATATGAGTGTCTCGTCTCACATGCTGTTTTATGTCAAGTTGAATCACCAGAGTATATGAGAGActtgtattttgaataaaaggatgaaaaaatatttatacagaaaCTGTATAAGTGATGTGGTTATATGGTTATAGATGTGGTTATATGTACAAAGTATATACCAAATGACTTTTTACACTaggtggaaaaaatattttttttcttatgttatttCTCTAACGTCAGATGTATAAGATCAGCCCTTTCCACTGCTACATTTTAACTCACTCCCCTAATACTTCAGTTTTAAGCAATCCTTTCAAAGAGAAGCAGTTATATGCAGTTGATGAGATAAATTCATGTTAGGGGAACATGTCTGAAACGCCcttctttttaaagctttaacgACTGGGATAGCtcaatcaaaaaaaagttaattacaaGCCCACATCTCATTTCAAACCTGCAAGACCTTCGTTAACCTTTGGAACAAAAATGAAGgcgtttttgatgaaatctgagagcatTTGACAGTCTACAGACAGCAGCGCAACTGACTGTTCAAGGcacagaaaggtagtaaggacatcattaaaacagtCCATCAGTTACATCATGGATGGGTCGACCTTAATgatatgaagctatgagaatacatTTTCTGTGCAAAGCACAAGAGCACCATGAAAATGGTGCAACAACATTCGAGAAATAAGTCATCGATGAATAAGAGGAGGTCCAAGAGGCCTTTTGAAAAATAACCCATTTAAAACTTGATTTAtacatagttaaaaaaataaatacaaaagatcATGAgttcaataaagaaaaacactgatataTTAACTTTCCTAATAAGACTTTTAAGTTTGGGGTTATATAATAGCGTTTCCAGGGCTGCCAACTCTCATGCTCTCACACCACGCATCCATTttgtcatgcaaaaaaaatgtcccTGGCAAAtccaatatttattttctgctgtgtttgttgTTGGAGTGATAAAAACTCCAGACAGCGCTCGTGAATGTCAAAATGATTTAGATGGCCAATCAAATGAAAGATGGGCGGGGCTTTACTGTTTCAGCATCACACACATTTAACTCTGTACCAGACCCGAACCACCCCCACATTAAATCTAGCTGGTCGGCAAAATTATTTGACTTCTCATGTAGCTCAAGCAATCAAACCATCATTAGGCATTCTAGGTTTTTgccttgaagaaaaacaaaaaagcatccTTTCTGTAAACAATGCAAAACTTTTGCCTGCATCTTGTGATCACTCCGCTAGGCTTTCGATCAAATGTGCATTGACGTTTTTTTGCTAAAAAGTGATCAAGAGAGCACAGTTACATATCATGATCATGTCATCTAACCATCATAACCAAATTATAACTTTAAATTAGACACTTTAGACACTTAACCCTGCTGAGCCctaattaaaactgaaactaaactaTAGGctataaacacattattatttaacgtcttcacaaaataaaaactcccATAAAAGCCTATATTTAGTTAGTTTTCGGGAAATCTCACTCCAAGCTGAAAACAAAAGTTGGCAGCCCTGCGTTTCTCATAACTCATCACTATCTCTCTTCAGCCGGACAGATCTCCACACTACTGTTAGTGACCCGTATCCCATACCAGCCTGCCCAAAACTGTGTATCCTTCCCTCCATGAGTGAAACGAATAAACCGAACCCCGGGTCCATAATCCTTAAAGA
>XM_043224137.1
GCGTGTTCTGGAGAGACGCCGGACTGCAACAGCCATGGCAAATTCTTACCCGTTGTAAATAGTTAATTCCAAGTTTACAATGTTTGGAGTAAAAGTTAACCGTAAGAAAAGTAACTGTGTTTGCGAGCCGTTGACATAGTAGACAGTTTATCCGTTTAAACATGTTTCGTCAGGCTGTTAAGAAACTAGaTACCTTGATACCAGATGCTGGAAAACAACTTGTGATGACAGCAATGTCCACAATTAAATGTGTGGTAGTTGGAGATGGAGCCGTGGGTAAAACCTGCCTTTTGGTTTCTTTTACGAACAAATTCCCATCAGAACCAACAGTGTTTGATAACCAAGCTGCGACTGTAACGTTTGATGGTGAACCATACACCATTAGATTATTTGATGCTGCGGGTCAGGATCAATTACGACCCTTATACTATCCCCAAACAGACGTCTTTCTAGTTTGTTTCTCTGTAGTTTCTCTGTcctcttttgaaaatgtaaaagaaaagTGGGTGCCTGAGATAACTTATCACTCTCCGAAAACCCCCTTTCTGCTGGTTGGGACTCAAATCGACCTTCGAGATGATCCTGTAACTATTGCAAGgcttgcaaaaaacaaacaaaagccaaTCAAACCAGAGACAGCTGAAAAACTAGCCAGAGACTTAAAGGCAGTCAACTATGTTGAATGCTCTGCTCTAACGCAGAAAGGACTCAAGAACGTGTTTGACGAGGCGATATTAGCAGCTCTGGAGCCCCCGGGATCCCAGAAGACATGCGGATGTGTGCTTTTATGAACTGGACAAATCTGGGTGTAAACCAATaggattgttttatttttgtacaggTTTTTAATCAGGAAAGTAACAGTAGCTTTTACTTGacaggtgctttccacatcatTTACCTCGGTACTCATATCACATAGTCAGATGATATGTGTGCAAATTTTGCCTTTAAGACTTTAACGATGCTTCACAACGAAGATATTCAGCTATGGTAGGGTAGAGTGGGGTAAGATGTGCCAGTTCTTATTTGTCTAACAATGAAGGAGATTTTGAAGTAAATACTTTCGTTTGTGTGCCAATGTCTGTCAAAAGCTTAATTTAGAAGACTTTACAGAGCCATATGAGTGTCTCGTCTCACATGCTGTTTTATGTCAAGTTGAATCACCAGAGTATATGAGAGActtgtattttgaataaaaggatgaaaaaatatttatacagaaaCTGTA
>XM_043224138.1
GTAGAAGCGTGTTCTGGAGAGACGCCGGACTGCAACAGCCATGGCAAATTCTTACCCGTTGTAAATAGTTAATTCCAAGTTTACAATGTTTGGAGTAAAAGTTAACCaTACCTTGATACCAGATGCTGGAAAACAACTTGTGATGACAGCAATGTCCACAATTAAATGTGTGGTAGTTGGAGATGGAGCCGTGGGTAAAACCTGCCTTTTGGTTTCTTTTACGAACAAATTCCCATCAGAACCAACAGTGTTTGATAACCAAGCTGCGACTGTAACGTTTGATGGTGAACCATACACCATTAGATTATTTGATGCTGCGGGTCAGGATCAATTACGACCCTTATACTATCCCCAAACAGACGTCTTTCTAGTTTGTTTCTCTGTAGTTTCTCTGTcctcttttgaaaatgtaaaagaaaagTGGGTGCCTGAGATAACTTATCACTCTCCGAAAACCCCCTTTCTGCTGGTTGGGACTCAAATCGACCTTCGAGATGATCCTGTAACTATTGCAAGgcttgcaaaaaacaaacaaaagccaaTCAAACCAGAGACAGCTGAAAAACTAGCCAGAGACTTAAAGGCAGTCAACTATGTTGAATGCTCTGCTCTAACGCAGAAAGGACTCAAGAACGTGTTTGACGAGGCGATATTAGCAGCTCTGGAGCCCCCGGGATCCCAGAAGACATGCGGATGTGTGCTTTTATGAACTGGACAAATCTGGGTGTAAACCAATaggattgttttatttttgtacaggTTTTTAATCAGGAAAGTAACAGTAGCTTTTACTTGacaggtgctttccacatcatTTACCTCGGTACTCATATCACATAGTCAGATGATATGTGTGCAAATTTTGCCTTTAAGACTTTAACGATGCTTCACAACGAAGATATTCAGCTATGGTAGGGTAGAGTGGGGTAAGATGTGCCAGTTCTTATTTGTCTAACAATGAAGGAGATTTTGAAGTAAATACTTTCGTTTGTGTGCCAATGTCTGTCAAAAGCTTAATTTAGAAGACTTTACAGAGCCATATGAGTGTCTCGTCTCACATGCTGTTTTATGTCAAGTTGAATCACCAGAGTATATGAGAGActtgtattttgaataaaaggatgaaaaaatatttatacagaaaCTGTA
>XM_043224139.1
GCGTGTTCTGGAGAGACGCCGGACTGCAACAGCCATGGCAAATTCTTACCCGTTGTAAATAGTTAATTCCAAGTTTACAATGTTTGGAGTAAAAGTTAACCGTAAGAAAAGTAACTGTGTTTGCGAGCCGTTGACATAGTAGACAGTTTATCCGTTTAAACATGTTTCGTCAGGCTGTTAAGAAACTAGaTACCTTGATACCAGATGCTGGAAAACAACTTGTGATGACAGCAATGTCCACAATTAAATGTGTGGTAGTTGGAGATGGAGCCGTGGGTAAAACCTGCCTTTTGGTTTCTTTTACGAACAAATTCCCATCAGAACCAACAGTGTTTGATAACCAAGCTGCGACTGTAACGTTTGATGGTGAACCATACACCATTAGATTATTTGATGCTGCGGGTATGTGGGTGCCTGAGATAACTTATCACTCTCCGAAAACCCCCTTTCTGCTGGTTGGGACTCAAATCGACCTTCGAGATGATCCTGTAACTATTGCAAGgcttgcaaaaaacaaacaaaagccaaTCAAACCAGAGACAGCTGAAAAACTAGCCAGAGACTTAAAGGCAGTCAACTATGTTGAATGCTCTGCTCTAACGCAGAAAGGACTCAAGAACGTGTTTGACGAGGCGATATTAGCAGCTCTGGAGCCCCCGGGATCCCAGAAGACATGCGGATGTGTGCTTTTATGAACTGGACAAATCTGGGTGTAAACCAATaggattgttttatttttgtacaggTTTTTAATCAGGAAAGTAACAGTAGCTTTTACTTGacaggtgctttccacatcatTTACCTCGGTACTCATATCACATAGTCAGATGATATGTGTGCAAATTTTGCCTTTAAGACTTTAACGATGCTTCACAACGAAGATATTCAGCTATGGTAGGGTAGAGTGGGGTAAGATGTGCCAGTTCTTATTTGTCTAACAATGAAGGAGATTTTGAAGTAAATACTTTCGTTTGTGTGCCAATGTCTGTCAAAAGCTTAATTTAGAAGACTTTACAGAGCCATATGAGTGTCTCGTCTCACATGCTGTTTTATGTCAAGTTGAATCACCAGAGTATATGAGAGActtgtattttgaataaaaggatgaaaaaatatttatacagaaaCTGTA

Function

NR:

description
PREDICTED: cell division control protein 42 homolog isoform X2

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU231594 True 3016 lncRNA 0.38 4 10514992 10518751
XM_043224137.1 False 1231 mRNA 0.40 6 10514985 10517143
XM_043224138.1 False 1149 mRNA 0.40 6 10514979 10517143
XM_043224139.1 False 1135 mRNA 0.40 5 10514985 10517143

Neighbor

gene id symbol gene type direction distance location
LOC122329231 LOC107656551,LOC107708819,LOC107570956 coding upstream 65648 10447808 ~ 10449331 (+)
LOC122328600 pcmtd2,LOC107708816,LOC107570992,LOC107701717,LOC107756374,LOC107656550,LOC108433859 coding upstream 82476 10429277 ~ 10432503 (+)
LOC122329277 ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831 coding upstream 133589 10368453 ~ 10381390 (+)
LOC122329250 si:dkey-261h17.1 coding upstream 192972 10316085 ~ 10322007 (+)
LOC122329223 NA coding upstream 257751 10247911 ~ 10257228 (+)
LOC122328734 sdcbp2,LOC107657068,LOC107672005 coding downstream 36525 10555276 ~ 10566657 (+)
LOC122328564 LOC107707753,LOC107672006,LOC107603149,LOC107657067,LOC107559477,LOC107747970 coding downstream 128212 10646963 ~ 10658747 (+)
commd7 commd7,LOC107671961,LOC107603136,LOC107747977,LOC107719919,LOC107563668 coding downstream 247111 10765862 ~ 10772199 (+)
nol4lb nol4lb,nol4l,LOC107672011,LOC107563666,LOC107657055 coding downstream 268133 10786884 ~ 10870751 (+)
srms zgc:194282,srms,LOC107672012,LOC107560891,LOC107657057,LOC107747981,LOC108435233,LOC108276248,LOC107563676 coding downstream 356073 10874824 ~ 10884303 (+)
G156171 NA non-coding upstream 126353 10387868 ~ 10388626 (+)
G156169 NA non-coding upstream 127479 10386960 ~ 10387500 (+)
G156217 NA non-coding upstream 168925 10263990 ~ 10346054 (+)
LOC122328771 NA non-coding upstream 258573 10254786 ~ 10256406 (+)
G156182 grasp,LOC107671830,LOC107723769,LOC107594022,LOC107549045 non-coding upstream 351003 10161998 ~ 10163976 (+)
G156387 LOC107747988,LOC107671949,LOC107707743,LOC107603135 non-coding downstream 1391 10520142 ~ 10520767 (+)
G156401 NA non-coding downstream 54463 10573214 ~ 10655710 (+)
G156398 NA non-coding downstream 148110 10666861 ~ 10674148 (+)
G156413 NA non-coding downstream 177551 10696302 ~ 10696558 (+)
G156417 NA non-coding downstream 183978 10702729 ~ 10703093 (+)
LOC122328383 tbx15,tbx18,LOC107712261,LOC107708785,LOC107656541 other upstream 87817 10415663 ~ 10427162 (+)
LOC122328781 pifo other upstream 151161 10329851 ~ 10363818 (+)
plagx plagx,LOC107723745,LOC107572778,LOC107756402,LOC107671865,LOC107549050,LOC107701746 other upstream 425161 10070780 ~ 10089818 (+)
G156081 phip,LOC107656532,LOC107708770,LOC107549027 other upstream 745359 9683746 ~ 9769620 (+)
G155927 zgc:194189,LOC107570831,LOC107708788,LOC107681978,LOC107695725,LOC107586555,LOC107718823 other upstream 1392586 9120884 ~ 9122393 (+)
LOC122329061 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other downstream 32346 10551097 ~ 10554720 (+)
G156399 LOC107707753,LOC107672006,LOC107603149 other downstream 44593 10563344 ~ 10572246 (+)
G156414 LOC107707743,LOC107747988,LOC107671949,LOC107559475 other downstream 180047 10698798 ~ 10700895 (+)
G156497 trim101,LOC107671958,LOC107560876,LOC107719918,LOC107656995,LOC107747989 other downstream 395153 10913904 ~ 10923988 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other downstream 558403 11077154 ~ 11085604 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_04465168_04466295 CDC42.L, CDC42L2, CDC42P6, CDC42 misc CI01000001 null 4463257 ~ 4466918 (-)