LOC122329061 (fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936)


Basic Information

Item Value
gene id LOC122329061
gene name fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10551097 ~ 10554720 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU231621
ACTCAAGATGAAATGGGTGTTGAGAGCACGTTACATAATACGACGTGCTGAAGGCTGGGGGATTCatccatattttctttttttgtgctcacAAAATAGcgtttaaaagtactttttaaaacaacaggcTAACCGCATCTTTCACTAACAAAGGAGAGGGGTCGCGTTTGTCATCAGCGGGATTTATGTTGAATTAGTGCGCCGCTATTGGACCCTCTCCCCGCGGTCACGTGACCCGCCAGCATCGCTCCTCTCCGCCCGCGAAcagctgtgagagagagacgcCGTGCAGCAGGGCTCTTCAGAAACACACCGCGCGCGACACGGACGAAATGGGAGTGGAGCTCGAGACCATAACCCCCGGAGACGGGAGGACTTTCCCCAAAAAAGGACAGACCTGTGTGGTGCATTATGTCGGCTCTCTGACAGATGGACGGAAGTTCGACTCTTCCCGTGACCGTGACAAGCCATTTAAGTTCAAGATTGGTAAACAGGAAGTTATCCGTGGCTGGGAGGAAGGAATTGCACAGATGAGTGTGGGCCAGCGTGCAAAGCTGACCTGTTCACCTGATTTTGCCTACGGTAATAAAGGCCATCCCGGGATTATTCCCCCAAATGCGACCCTCATCTTCGACGTGGAGCTTCTCAGTTTGGAgtgatttaatgcattaacaatgCCTTTTGTCAATTTTGGATTCTATTACAAATGCTTAAGTGTCAAAAGGTTTAGTCTTAACATTAGAAGCCTGATTAAATCAATTCTCTCTTTATGTCAGgccatattttagtttttattttgattctaAGCTTTATTGAGCATCCTACCCCACAGTTTTTGGCACATTACGTACAAAACAGTGCTTTATCTTATCGGTTCTccgacattttattttttgcgttGGTCAAATTACACCAGAAATGATTCTTTAGCTCCTTTTAATTTGAATCCAACATTCTTCCTGTCTGATTGCTCTGATACCACCAAAAACCTTGCAATGTCCTTAATCTTGAACTTGAATGCTTGAAGGAACCCTTTAGACTTCTTGTGACTTTTTCTTACACTGTGATCGTCGTCGGCTTGAGACCAAGTACAAACTTGCTAAAGAATCTGTGGCTCTATCCCCGAACAGCAAtcgaaaaaagaaataaatcttaTTAGATCATGTTTGTAATATAAACACTTAGattgaataaatacatcaatTGCGTTCAacgctttttaaaacaaaatatgtcagTACTGAATTTATTTGTAGTTTGAACAGGCTCGCTGGTTTTAATTAgacaaaaaagaagcaaaatcTTGTGCCTCCTTGTGTGTTAGACATCTGCCAGAATACCGCTGGTTTTGTATATCTGCAAAGTGACCATATCAACTGAAAAAGTGCCATCACATTACCTGAAATAAAACTTTACTATAGACCGGGCTGATTAATACAAGTAATGAAGTATgctttttctgtcattttggtgagcagcatttttatatataggttttgtttatttttttgctgtattttattaacACGCAGCTATTTGGAAATGCTTTCAGCGTGTTCCCTCTCTTCTGTGTTTGATGAGGTTGTGTAGTGGAGTAAGCGGCACGTTTGGCACCGCAGCAATAGATGCATGCCATTCTTAGTGCTTAAGGATTTTGTGATCATGTTCATTGTCTCATTGAATCTCAGAATCAACCAATAACCTGCTAATTAATATCTGTAATTGATGGGCACTTTCTGTCCTCATGGAAATGAAAGACTATGTTTAACTGAAAGACAAAGAtgtctggaaaaaaataagGGGTTGTGACCTACACTACATATCGTGACATACACTAATTGCCGTTCTGATGCTAAATTATTTTCAGCTATTCATGGACGTTAATGTAGGTTGCGCCGCCTAGACAATTGATGTGAATATATCGGATGCGGATACAGTGACAGTGCTCTTTTGTATTGACatggaaatcatttttaatttaatagaaGTCTGTAGACGCTTAAATACTTGAGTGGATGCTGGCGATGTCTGTGATTCTAAGTCAAGCATCAAATATATggctttaatatttctgtaatgcactgtatatttatgtactGTCTTAAAGACAATAAACGATTCAAATAATTC
>XM_043225266.1
ATGAAATGGGTGTTGAGAGCACGTTACATAATACGACGTGCTGAAGGCTGGGGGATTCatccatattttctttttttgtgctcacAAAATAGcgtttaaaagtactttttaaaacaacaggcTAACCGCATCTTTCACTAACAAAGGAGAGGGGTCGCGTTTGTCATCAGCGGGATTTATGTTGAATTAGTGCGCCGCTATTGGACCCTCTCCCCGCGGTCACGTGACCCGCCAGCATCGCTCCTCTCCGCCCGCGAAcagctgtgagagagagacgcCGTGCAGCAGGGCTCTTCAGAAACACACCGCGCGCGACACGGACGAAATGGGAGTGGAGCTCGAGACCATAACCCCCGGAGACGGGAGGACTTTCCCCAAAAAAGGACAGACCTGTGTGGTGCATTATGTCGGCTCTCTGACAGATGGACGGAAGTTCGACTCTTCCCGTGACCGTGACAAGCCATTTAAGTTCAAGATTGGTAAACAGGAAGTTATCCGTGGCTGGGAGGAAGGAATTGCACAGATGAGTGTGGGCCAGCGTGCAAAGCTGACCTGTTCACCTGATTTTGCCTACGGTAATAAAGGCCATCCCGGGATTATTCCCCCAAATGCGACCCTCATCTTCGACGTGGAGCTTCTCAGTTTGGAgtgatttaatgcattaacaatgCCTTTTGTCAATTTTGGATTCTATTACAAATGCTTAAGTGTCAAAAGGTTTAGTCTTAACATTAGAAGCCTGATTAAATCAATTCTCTCTTTATGTCAGgccatattttagtttttattttgattctaAGCTTTATTGAGCATCCTACCCCACAGTTTTTGGCACATTACGTACAAAACAGTGCTTTATCTTATCGGTTCTccgacattttattttttgcgttGGTCAAATTACACCAGAAATGATTCTTTAGCTCCTTTTAATTTGAATCCAACATTCTTCCTGTCTGATTGCTCTGATACCACCAAAAACCTTGCAATGTCCTTAATCTTGAACTTGAATGCTTGAAGGAACCCTTTAGACTTCTTGTGACTTTTTCTTACACTGTGATCGTCGTCGGCTTGAGACCAAGTACAAACTTGCTAAAGAATCTGTGGCTCTATCCCCGAACAGCAAtcgaaaaaagaaataaatcttaTTAGATCATGTTTGTAATATAAACACTTAGattgaataaatacatcaatTGCGTTCAacgctttttaaaacaaaatatgtcagTACTGAATTTATTTGTAGTTTGAACAGGCTCGCTGGTTTTAATTAgacaaaaaagaagcaaaatcTTGTGCCTCCTTGTGTGTTAGACATCTGCCAGAATACCGCTGGTTTTGTATATCTGCAAAGTGACCATATCAACTGAAAAAGTGCCATCACATTACCTGAAATAAAACTTTACTATAGA

Function

symbol description
fkbp1ab Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in chaperone-mediated protein folding and protein peptidyl-prolyl isomerization. Predicted to be active in cytoplasm. Is expressed in basal plate midbrain region; brain; optic vesicle; and retina. Orthologous to human FKBP1A (FKBP prolyl isomerase 1A).
fkbp1a Enables several functions, including FK506 binding activity; activin binding activity; and peptidyl-prolyl cis-trans isomerase activity. Involved in several processes, including SMAD protein complex assembly; regulation of protein metabolic process; and regulation of transmembrane receptor protein serine/threonine kinase signaling pathway. Located in Z disc; cytosol; and membrane.

NR:

description
PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP1A

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0033017 sarcoplasmic reticulum membrane cellular_component
GO:0005528 FK506 binding molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU231621 True 2130 TUCP 0.40 4 10551097 10554720
XM_043225266.1 False 1415 mRNA 0.42 4 10551104 10554012

Neighbor

gene id symbol gene type direction distance location
LOC122329231 LOC107656551,LOC107708819,LOC107570956 coding upstream 101766 10447808 ~ 10449331 (+)
LOC122328600 pcmtd2,LOC107708816,LOC107570992,LOC107701717,LOC107756374,LOC107656550,LOC108433859 coding upstream 118594 10429277 ~ 10432503 (+)
LOC122329277 ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831 coding upstream 169707 10368453 ~ 10381390 (+)
LOC122329250 si:dkey-261h17.1 coding upstream 229090 10316085 ~ 10322007 (+)
LOC122329223 NA coding upstream 293869 10247911 ~ 10257228 (+)
LOC122328734 sdcbp2,LOC107657068,LOC107672005 coding downstream 556 10555276 ~ 10566657 (+)
LOC122328564 LOC107707753,LOC107672006,LOC107603149,LOC107657067,LOC107559477,LOC107747970 coding downstream 92243 10646963 ~ 10658747 (+)
commd7 commd7,LOC107671961,LOC107603136,LOC107747977,LOC107719919,LOC107563668 coding downstream 211142 10765862 ~ 10772199 (+)
nol4lb nol4lb,nol4l,LOC107672011,LOC107563666,LOC107657055 coding downstream 232164 10786884 ~ 10870751 (+)
srms zgc:194282,srms,LOC107672012,LOC107560891,LOC107657057,LOC107747981,LOC108435233,LOC108276248,LOC107563676 coding downstream 320104 10874824 ~ 10884303 (+)
G156387 LOC107747988,LOC107671949,LOC107707743,LOC107603135 non-coding upstream 30330 10520142 ~ 10520767 (+)
G156171 NA non-coding upstream 162471 10387868 ~ 10388626 (+)
G156169 NA non-coding upstream 163597 10386960 ~ 10387500 (+)
G156217 NA non-coding upstream 205043 10263990 ~ 10346054 (+)
LOC122328771 NA non-coding upstream 294691 10254786 ~ 10256406 (+)
G156401 NA non-coding downstream 18494 10573214 ~ 10655710 (+)
G156398 NA non-coding downstream 112141 10666861 ~ 10674148 (+)
G156413 NA non-coding downstream 141582 10696302 ~ 10696558 (+)
G156417 NA non-coding downstream 148009 10702729 ~ 10703093 (+)
G156431 NA non-coding downstream 172198 10726918 ~ 10727164 (+)
LOC122328447 LOC107603155,LOC107707751,LOC107672009 other upstream 32346 10514979 ~ 10518751 (+)
LOC122328383 tbx15,tbx18,LOC107712261,LOC107708785,LOC107656541 other upstream 123935 10415663 ~ 10427162 (+)
LOC122328781 pifo other upstream 187279 10329851 ~ 10363818 (+)
plagx plagx,LOC107723745,LOC107572778,LOC107756402,LOC107671865,LOC107549050,LOC107701746 other upstream 461279 10070780 ~ 10089818 (+)
G156081 phip,LOC107656532,LOC107708770,LOC107549027 other upstream 781477 9683746 ~ 9769620 (+)
G156399 LOC107707753,LOC107672006,LOC107603149 other downstream 8624 10563344 ~ 10572246 (+)
G156414 LOC107707743,LOC107747988,LOC107671949,LOC107559475 other downstream 144078 10698798 ~ 10700895 (+)
G156497 trim101,LOC107671958,LOC107560876,LOC107719918,LOC107656995,LOC107747989 other downstream 359184 10913904 ~ 10923988 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other downstream 522434 11077154 ~ 11085604 (+)
G156586 NA other downstream 619701 11174421 ~ 11177033 (+)

Expression


Co-expression Network