LOC122328798 (fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936)


Basic Information

Item Value
gene id LOC122328798
gene name fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10675680 ~ 10678150 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU231697
CCCGCCAGCATCGCTCCTCTCCGCCCGCGAAcagctgtgagagagagacgcCGTGCAGCAGGGCTCTTCAGAAACACACCGCGCGCGACACGGACGAAATGGGAGTGGAGCTCGAGACCATAACCCCCGGAGACGGGAGGACTTTCCCCAAAAAAGGACAGACCTGTGTGGTGCATTATGTCGGCTCTCTGACAGATGGACGGAAGTTCGACTCTTCCCGTGACCGTGACAAGCCATTTAAGTTCAAGATTGGTAAACAGGAAGTTATCCGTGGCTGGGAGGAAGGAATTGCACAGATGAGTGTGGGCCAGCGTGCAAAGCTGACCTGTTCACCTGATTTTGCCTACGGTAATAAAGGCCATCCCGGGATTATTCCCCCAAATGCGACCCTCATCTTCGACGTGGAGCTTCTCAGTTTGGAgtgatttaatgcattaacaatgCCTTTTGTCAATTTTGGATTCTATTACAAATGCTTAAGTGTCAAAAGGTTTAGTCTTAACATTAGAAGCCTGATTAAATCAATTCTCTCTTTATGTCAGgccatattttagtttttattttgattctaAGCTTTATTGAGCATCCTACCCCACAGTTTTGGCACATTACGTACAAAACAGTGCTTTATCTTATCGGTTCTccgacattttattttttgcgttGGTCAAATTACACCAGAAATGATTCTTTAGCTCCTTTTAATTTGAATCCAACATTCTTCCTGTCTGATTGCTCTGATACCACCAAAAACCTTGCAATGTCCTTAATCTTGAACTTGAATGCTTGAAGGAACCCTTTAGACTTCTTGTGACTTTTTCTTACACTGTGATCGTCGTCGGCTTGAGACCAAGTACAAACTTGCTAAAGAATCTGTGG
>XM_043224764.1
CGCATCTTTCACTAACAAAGGAGAGGGGTCGCGTTTGTCATCAGCGGGATTTATGTTGAATTAGTGCGCCGCTATTGGACCCTCTCCCCGCGGTCACGTGACCCGCCAGCATCGCTCCTCTCCGCCCGCGAAcagctgtgagagagagacgcCGTGCAGCAGGGCTCTTCAGAAACACACCGCGCGCGACACGGACGAAATGGGAGTGGAGCTCGAGACCATAACCCCCGGAGACGGGAGGACTTTCCCCAAAAAAGGACAGACCTGTGTGGTGCATTATGTCGGCTCTCTGACAGATGGACGGAAGTTCGACTCTTCCCGTGACCGTGACAAGCCATTTAAGTTCAAGATTGGTAAACAGGAAGTTATCCGTGGCTGGGAGGAAGGAATTGCACAGATGAGTGTGGGCCAGCGTGCAAAGCTGACCTGTTCACCTGATTTTGCCTACGGTAATAAAGGCCATCCCGGGATTATTCCCCCAAATGCGACCCTCATCTTCGACGTGGAGCTTCTCAGTTTGGAgtgatttaatgcattaacaatgCCTTTTGTCAATTTTGGATTCTATTACAAATGCTTAAGTGTCAAAAGGTTTAGTCTTAACATTAGAAGCCTGATTAAATCAATTCTCTCTTTATGTCAGgccatattttagtttttattttgattctaAGCTTTATTGAGCATCCTACCCCACAGTTTTGGCACATTACGTACAAAACAGTGCTTTATCTTATCGGTTCTccgacattttattttttgcgttGGTCAAATTACACCAGAAATGATTCTTTAGCTCCTTTTAATTTGAATCCAACATTCTTCCTGTCTGATTGCTCTGATACCACCAAAAACCTTGCAATGTCCTTAATCTTGAACTTGAATGCTTGAAGGAACCCTTTAGACTTCTTGTGACTTTTTCTTACACTGTGATCGTCGTCGGCTTGAGACCAAGTACAAACTTGCTAAAGAATCTGTGGCTCT

Function

symbol description
fkbp1ab Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in chaperone-mediated protein folding and protein peptidyl-prolyl isomerization. Predicted to be active in cytoplasm. Is expressed in basal plate midbrain region; brain; optic vesicle; and retina. Orthologous to human FKBP1A (FKBP prolyl isomerase 1A).
fkbp1a Enables several functions, including FK506 binding activity; activin binding activity; and peptidyl-prolyl cis-trans isomerase activity. Involved in several processes, including SMAD protein complex assembly; regulation of protein metabolic process; and regulation of transmembrane receptor protein serine/threonine kinase signaling pathway. Located in Z disc; cytosol; and membrane.

NR:

description
PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP1A

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0033017 sarcoplasmic reticulum membrane cellular_component
GO:0005528 FK506 binding molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K09568 FKBP1; FK506-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU231697 False 879 TUCP 0.45 4 10675684 10678049
XM_043224764.1 True 984 mRNA 0.46 4 10675680 10678150

Neighbor

gene id symbol gene type direction distance location
LOC122328766 sdcbp2,LOC107657068,LOC107672005 coding downstream 1583 10662263 ~ 10674097 (-)
LOC122328736 LOC107672006,LOC107603149,LOC107707753,LOC107657067 coding downstream 93250 10568565 ~ 10582430 (-)
LOC122328446 LOC107707743,LOC107671949,LOC107657006,LOC107603135,LOC107559475 coding downstream 150308 10522098 ~ 10525372 (-)
LOC122328445 zgc:173570,LOC107657062,LOC107559474,LOC107747974 coding downstream 154608 10516716 ~ 10521072 (-)
LOC122329230 dnajc11a,LOC107708818,LOC107701714,LOC107756372,LOC107586512,LOC107656549,LOC108433830 coding downstream 218762 10449485 ~ 10456918 (-)
LOC122328797 LOC107747975,LOC107657065,LOC107672050,LOC570014,LOC107559461,LOC107559462,LOC107747988,LOC107603112 coding upstream 855 10679005 ~ 10686715 (-)
LOC122328796 LOC107747975,LOC107657065,LOC107672050,LOC570014,LOC107559461,LOC107747988,LOC107603112 coding upstream 11514 10689664 ~ 10694950 (-)
cdc42l2 LOC107603155,LOC107707751,LOC107672009 coding upstream 27833 10705983 ~ 10709169 (-)
dnmt3bb.2 LOC107707749,LOC107747973,LOC107559473,LOC107657061,LOC107603113 coding upstream 31196 10709346 ~ 10727569 (-)
dnmt3bb.1 dnmt3bb.1,LOC107672053,LOC107657059,LOC107747976,LOC107563667,LOC107603157,LOC108276083 coding upstream 51911 10730061 ~ 10765008 (-)
G156459 NA non-coding downstream 101 10667957 ~ 10675579 (-)
G156452 NA non-coding downstream 132793 10540899 ~ 10542887 (-)
G156364 NA non-coding downstream 287065 10386954 ~ 10388615 (-)
G156341 NA non-coding downstream 323799 10348141 ~ 10351881 (-)
LOC122328389 NA non-coding downstream 381637 10291465 ~ 10294043 (-)
G156468 NA non-coding upstream 18302 10696452 ~ 10696677 (-)
G156469 NA non-coding upstream 20447 10698597 ~ 10700224 (-)
G156471 NA non-coding upstream 24446 10702596 ~ 10702821 (-)
G156478 NA non-coding upstream 49814 10727964 ~ 10728248 (-)
LOC122329022 NA non-coding upstream 202441 10880591 ~ 10882652 (-)
ankrd52a ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831,LOC107723718 other downstream 289713 10218473 ~ 10385967 (-)
LOC122328779 taf8,LOC107723763,LOC107756368,LOC107549030,LOC107671856,LOC107594013,LOC107701755 other downstream 308311 10363905 ~ 10367369 (-)
LOC122329224 NA other downstream 315894 10355941 ~ 10359786 (-)
zgc:153284 LOC107701733,LOC107571300,LOC107756391,LOC107549061,LOC107708783 other downstream 841998 9831809 ~ 9833682 (-)
hmgn3 hmgn3,LOC107756386,LOC107671890 other downstream 867311 9801785 ~ 9808369 (-)
G156746 NA other upstream 422594 11100744 ~ 11105223 (-)
LOC122328546 rpl10 other upstream 1063250 11741400 ~ 11746620 (-)
LOC122329329 NA other upstream 1067112 11745262 ~ 11745395 (-)
atp2b3b atp2b3b,atp2b3,LOC107737604,LOC107712727,LOC107672007,LOC107593407 other upstream 1085559 11763709 ~ 11857968 (-)
si:dkey-93l1.9 si:dkey-93l1.9,LOC107699586,LOC107593449,LOC107671978,LOC107699561,LOC107576394,LOC107737609 other upstream 1121772 11799922 ~ 11801632 (-)

Expression


Co-expression Network