G156719 (rnd1a,LOC107560900,LOC107737660,LOC107657046,LOC107563659,LOC107741331,LOC107672025)


Basic Information

Item Value
gene id G156719
gene name rnd1a,LOC107560900,LOC107737660,LOC107657046,LOC107563659,LOC107741331,LOC107672025
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11047145 ~ 11053295 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU232086
tcttttttttttttttttttttATTGACCAAATCCAGGTTTTAGTTAATTTAAGAGTGACACATGACGTCAGAGACAAGGgaaaataatcaataaacaatattcaatataaaatagATTGTCTGAAACTAAAGAACAAAACAGAACCAGCAATAATCAACTATTAATAAGTTACAGTTACATtgcacacacaatcacacagtCTGTTCTGAATTAGTTTGCTTCACAGACTTCATTTAAAGGGCTGTACAAAACTGATTATGCACAACATATGTACGTCCAGACTGCAGTAAAAGGAAGATTGTGGAGATCCACCACATCAAACATATAACACGTAAGAGTGCTACTAAACCAGACAACAGTAACAAATTCATATCAAGATGATGGTCTGTGAGATGATTCATGTTTCAAACTATAACTATAAGCTATAGCCATGAAAAAGCCATTTGTTATGCTACAGTGAGAAACTTGTCCTTATTTTCACTTTGTTTACaccctgtttctctctctccacttcTCTCGAGTGGTTTTCGGACGTGTAGTCCAGCTTAAGTGACTTGTCTGTTGCTAAGTAACGGTGTAGAATTGCATGAATTGATGAACGACCTCCTAAAGTTTCTTTCAGATGAGCTAGAGTGAGAATTTACAAAGtcaatgatataataataacaaagttGTACAAATGCGTGGTTAAGGCAAGACCAGATTATATACAGCATTTTCATTCTCATTCTCTAGACAGTGACTATGTAAATTTAGATTTGAATGAATGTGCAGTTTTCACAATATCCAGTGCTacaacatttttggattaaattagTGAAAATTACCCATCATTTATCTTTccgaaaataataataataataataaccttttTCGGcgcaaaacaaagtaaaacgtGAATATTGTGTAGTATTACAGtttcaaaatttttaaatgtaatttatggcaaagctgaattttggaAGTTATCCTGAGGTCAGATTCTGCATAATGCTGTCTCGTCTGACTTCTCAGTTCATTTCTACTTGGCCATTTATAAGCCCAAAGTGAGGATTTAGTTGTTTTATGATTAAGCATTACACAACCAGGGGGTTGTGGGATTTAAGACCGAGATTACCAGAATGAGGCTTAGCATGAGAGGAGAGTCCTCTGTGACAGTGATCCGACCGAATGCATGAGAATCACTGAAATTATAACGCAATCTAATGTCCAGCCTCAATTTTAACCAGTAACTTTACTACATAACAATAGAATCTGTTCTTTGCAGGCCTGCTATTGAGAATTAGGTGGAAGAttactgtaaaagaaaactCAACTGCAACATTCAAATTATCTTCTCGCTTATGCAACATTGATCAGTTTTGGTGGACTGCAGTGTCTCTTAGTAATCCCCCATGACCTTTCCAGTCCATCTCTAAAATTACTTTACTAAAAGATCTCGTTTTCTATAAAAGAGCAGTTGGAACATCTGGAAAGTGTCTTTGTGGCAATAACTCCTGCTCTATTGAGAAATGGCCCGGCGATGCTGGGCTTCTTCTCATTGGCTGAGATTTATGACCTGTTCTCTTGGGGCAGAAAGCGCATGAAGGACTACAgtaaagatagagagagagtgaaagagtgtGTCAGCATGTCCAATACATCTGGATGTACCAATGTGATTGGATGCTTTATTTAGCAGATTTATAACATTGTCCGCCTTTTTTAGGAGGACATAAAATCTTGTTTGGCTCCTCCCCTCATGCTTGCATGAGTTCTCACATCGTAGATCAGTGCAAGCCAATACAAGCAAAGCATAATTCTGTACTGAAACAGTAACTAATGCCAACCTGTATTCAATCATCCTCTCGCTTTCCATTCAACAATCGCATCCATGTTCACTAAAGTGCGTACTGTGTAACACATCCTCtttctttaaacattaaattacgTTCACAGCTCAACCCTCATTCCCACGCTATCTACCCATAAAAATACAGACAGTCCTGTACATTTCGTTTTTCGACTGACTGTTTTGTTCACTGATACAAAATGCAGCTCATGTAAAGGCTGGTAAAGAGGATGTGTAACAGCCGAAAACCTTAAACAATGGCAGCAGCTCTTAATTGTTGGGATGAGTGTGTTTGCAGGTGGGGTGTCAGaatggaagaagaaaaacataagTGTAGAGAGAGGGAGGGGTCATTAAAAGTCATGACCTCTCCTTTTCTCCACACCCCCCCTCAACACTTTCGAAGAGCGAAAATAAGGTTTTTTCTGGAGTTGGAGTGGCGCGCATAGAGCTCACATGATGGAACAGCTCTTGGTTCTCTCCTTGCTGAAGGAGGAGGTCAGGAGCTCTGCTTTGCTGGGCAAGTGAAGCAGGCGTTTGGACAGCCGGCGAGTGGGGCTTTGCTTTATAGGGGGCTGCAGTTTGTTAAGGCATGTTAGTGCCGCTGAGCGGAACACGCTGTGGATGCTCTTCTCCGAAGTGAATGCAGAGCACTCCAGGTACACCTCTGCTCCTACCTGCTTGGCCAACAAGGTGCC

Function

symbol description
rnd1a Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including cytoskeleton organization; regulation of actin cytoskeleton organization; and regulation of cell shape. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and cytoskeleton. Is expressed in nervous system; optic vesicle; otic vesicle; and polster. Orthologous to human RND1 (Rho family GTPase 1).

NR:

description
PREDICTED: rho-related GTP-binding protein Rho6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU232086 True 2531 lncRNA 0.39 2 11047145 11053295

Neighbor

gene id symbol gene type direction distance location
bhlhe23 bhlhe23,LOC107737661,LOC107560898,LOC107671927,LOC107657004,LOC107756976,LOC107563681 coding downstream 59733 10985385 ~ 10987412 (-)
dnajc5ab LOC107747984,LOC107672029,LOC107563663,LOC107719908,LOC107657050,LOC107560895 coding downstream 112238 10923126 ~ 10934907 (-)
trim101 LOC107719918,LOC107671958,LOC107560876,LOC107656995,LOC107747989 coding downstream 124065 10915631 ~ 10923080 (-)
tpd52l2b tpd52l2,tpd52l2b,LOC107672016,LOC107719909 coding downstream 132942 10903880 ~ 10914203 (-)
ppdpfb ppdpfb,ppdpf,LOC107719911,LOC107560892,LOC107657053,LOC107747982,LOC107563664 coding downstream 145359 10899826 ~ 10901786 (-)
tfip11 tfip11,LOC107737658,LOC107671994,LOC107657044,LOC107741308 coding upstream 9062 11062357 ~ 11068609 (-)
pm20d1.2 pm20d1.2,LOC107672051,LOC107560903,LOC107737652,LOC107560862 coding upstream 53646 11106941 ~ 11111646 (-)
pm20d1.1 pm20d1.1,LOC107737726,LOC107671971,LOC107656991,LOC107560862,LOC107672051 coding upstream 59714 11113009 ~ 11117428 (-)
lemd1 LOC107741312,LOC107657040,LOC107737650,LOC107563651,LOC107672064 coding upstream 64387 11117682 ~ 11131520 (-)
nucks1b LOC107563650,LOC107737648,LOC107741315,LOC107672021,LOC107560904,LOC107657038 coding upstream 95573 11148868 ~ 11154450 (-)
G156715 NA non-coding downstream 11650 11033742 ~ 11035495 (-)
G156538 NA non-coding downstream 87299 10959635 ~ 10959846 (-)
LOC122329022 NA non-coding downstream 164493 10880591 ~ 10882652 (-)
G156478 NA non-coding downstream 318897 10727964 ~ 10728248 (-)
G156471 NA non-coding downstream 344324 10702596 ~ 10702821 (-)
G156726 LOC107737655 non-coding upstream 18115 11071410 ~ 11075961 (-)
G156759 NA non-coding upstream 109369 11162664 ~ 11163019 (-)
G156762 NA non-coding upstream 189305 11242600 ~ 11244820 (-)
G156785 NA non-coding upstream 299864 11353159 ~ 11353828 (-)
LOC122328925 NA non-coding upstream 322882 11376177 ~ 11376688 (-)
LOC122328798 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other downstream 368995 10675680 ~ 10678150 (-)
ankrd52a ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831,LOC107723718 other downstream 661178 10218473 ~ 10385967 (-)
LOC122328779 taf8,LOC107723763,LOC107756368,LOC107549030,LOC107671856,LOC107594013,LOC107701755 other downstream 679776 10363905 ~ 10367369 (-)
LOC122329224 NA other downstream 687359 10355941 ~ 10359786 (-)
zgc:153284 LOC107701733,LOC107571300,LOC107756391,LOC107549061,LOC107708783 other downstream 1213463 9831809 ~ 9833682 (-)
G156746 NA other upstream 47449 11100744 ~ 11105223 (-)
LOC122328546 rpl10 other upstream 688105 11741400 ~ 11746620 (-)
LOC122329329 NA other upstream 691967 11745262 ~ 11745395 (-)
atp2b3b atp2b3b,atp2b3,LOC107737604,LOC107712727,LOC107672007,LOC107593407 other upstream 710414 11763709 ~ 11857968 (-)
si:dkey-93l1.9 si:dkey-93l1.9,LOC107699586,LOC107593449,LOC107671978,LOC107699561,LOC107576394,LOC107737609 other upstream 746627 11799922 ~ 11801632 (-)

Expression


Co-expression Network