LOC122328549 (smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283)


Basic Information

Item Value
gene id LOC122328549
gene name smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11730980 ~ 11732361 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU232248
GTTTTCCTGCTCTGTAACGCACGTGAAGGCGCTGCGGGATCAGTGTTGAAGGACGACTGTTCGCATGTCGTATTCTAACGATTACAACTCAGTTTTCACAAGTGCATATTATTGTGCTGTGCTTTAGAAGTGTCTTGCCGTTGActgtgttttgaaagaaaaagatgtTTAGAAAAAGTCACAacctaaaatacatattaactCTTGTACCAGGGAAAAGACGTTTTGGGACGTACAGATTTTTGCCCTTGTTTTTCTGTATCGGGGGTGTCATGGAGTGGATCATGATTAACGTGAGAATAGGAAAGGAAACGTTTTATGATGTGTACAGAAGAAAACAATCAGAGAGGGAATACCAGCAGAAGATTGAGGAGGGCTTTGTGCTCACAGAGTCTGAAGTCAAATGAAATCAtcagaacacactgaaaataaataatcatgatAAAGAGACTGAAACCAAAAATGGGAATGTTATTATGCATAGACTGTAGGGCAGCTGTGACATGGACTGTAATTATGAGGACATATGAGGTGCAGAAAGCTGCCAGCAAGGAAGATCACAtcttttgtattgtttaaatgataaagGTGGTTAtttgtgcaataaaaataatcgtGTCTTTTCTGGGATTCTAAATATCACGTTTTTGGAAGCTTGTAAAAAGTCATTACCATGAGAAACCTCGCAATTATGACTTATTAGGCATCTCATATTGagaaatgtacatatatatgatagcacacatttcttttaaaggttgctcattatcataataatgacaaattttAGCATGACCTTATATCATTcaaattttgaaatgaaatgtatcGTTACAGTATATCAGGGCTGTCCAAACTTGGttcaaaatgaatttatttaccAGCATTGGATATCAGTAACAGTAACCACTGGATATGTTTTTCCCGTTGTAAGTTCACAGATATTACTACAGTTTTTACttgcaaaaacatgaataaaatgattaca
>XM_043224298.1
TGACGCTGACGCCGCCATGTTTTCCTGCTCTGTAACGCACGTGAAGGCGCTGCGGGATCAGTGTTGAAGGACGACTGTTCGCATGTCGTATTCTAACGATTACAACTCAGTTTTCACAAGTGCATATTATTGTGCTGTGCTTTAGAAGTGTCTTGCCGTTGActgtgttttgaaagaaaaagatgtTTAGAAAAAGTCACAacctaaaatacatattaactCTTGTACCAGGGAAAAGACGTTTTGGGACGTACAGATTTTTGCCCTTGTTTTTCTGTATCGGGGGTGTCATGGAGTGGATCATGATTAACGTGAGAATAGGAAAGGAAACGTTTTATGATGTGTACAGAAGAAAACAATCAGAGAGGGAATACCAGCAGAAGATTGAGGAGGGCTTTGTGCTCACAGAGTCTGAAGTCAAATGAAATCAtcagaacacactgaaaataaataatcatgatAAAGAGACTGAAACCAAAAATGGGAATGTTATTATGCATAGACTGTAGGGCAGCTGTGACATGGACTGTAATTATGAGGACATATGAGGTGCAGAAAGCTGCCAGCAAGGAAGATCACAtcttttgtattgtttaaatgataaagGTGGTTAtttgtgcaataaaaataatcgtGTCTTTTCTGGGA

Function

symbol description
smim4 Predicted to be located in membrane. Predicted to be integral component of membrane.

NR:

description
PREDICTED: small integral membrane protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU232248 True 988 lncRNA 0.36 2 11730998 11732361
XM_043224298.1 False 648 mRNA 0.40 2 11730980 11732003

Neighbor

gene id symbol gene type direction distance location
abhd6b abhd6b,LOC107737716,LOC107712730,LOC107560889,LOC107671974,LOC107699577 coding upstream 4488 11723156 ~ 11726492 (+)
flnb LOC107737717,LOC107560870,LOC107671935 coding upstream 8694 11705759 ~ 11722286 (+)
slmapb slmapb,LOC107560933,LOC107712736,LOC107699575 coding upstream 26590 11695816 ~ 11704390 (+)
atp6ap1lb atp6ap1lb,LOC107672058,LOC107737620,LOC107560932,LOC107570286,LOC103031199,LOC108436292,LOC107699574,LOC105890636 coding upstream 37489 11685712 ~ 11693491 (+)
LOC122328536 LOC107737719,LOC107671965,LOC107560886,LOC107656999,LOC107570275,LOC107712682,LOC101883217 coding upstream 92957 11634276 ~ 11638023 (+)
dnase1l1 dnase1l3,LOC107737612,LOC107672041,LOC107560934,LOC107570280,LOC107712731 coding downstream 6434 11738795 ~ 11741871 (+)
flna flna,LOC107737611,LOC107712729,LOC107570276,LOC107699576 coding downstream 30068 11762429 ~ 11794733 (+)
emd LOC107737610,LOC107671981,LOC107712726,LOC107560939,LOC107699568,LOC107570273 coding downstream 64133 11796494 ~ 11799916 (+)
cfap126 NA coding downstream 134357 11866718 ~ 11868437 (+)
tnnc1b tnnc1b,LOC107671989,LOC107568847,LOC108276054,LOC107593406,LOC105890642,LOC103374679 coding downstream 190523 11922884 ~ 11924595 (+)
G156701 NA non-coding upstream 74600 11655795 ~ 11656380 (+)
G156700 NA non-coding upstream 75664 11654916 ~ 11655316 (+)
G156699 asb14b,LOC107560887,LOC107671999,LOC107737718 non-coding upstream 76363 11654255 ~ 11654617 (+)
G156698 asb14b,LOC107671999,LOC107560887,LOC107737718,LOC108276494 non-coding upstream 76820 11653380 ~ 11654160 (+)
G156690 fam208ab,LOC107737622,LOC107712737,LOC107570279 non-coding upstream 79873 11614130 ~ 11651107 (+)
G156828 NA non-coding downstream 1895 11734256 ~ 11734937 (+)
G156823 LOC107560942,LOC107737604,LOC107712727,LOC107672007 non-coding downstream 31346 11763707 ~ 11822844 (+)
G156843 tktb,LOC108410447,LOC107671986,LOC103046877,LOC107737598 non-coding downstream 95380 11827741 ~ 11926375 (+)
G156881 LOC107737595,LOC107671985,LOC107568839 non-coding downstream 214323 11946684 ~ 11972922 (+)
LOC122328486 NA non-coding downstream 297785 12030146 ~ 12037888 (+)
G156586 NA other upstream 553947 11174421 ~ 11177033 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other upstream 645376 11077154 ~ 11085604 (+)
G156497 trim101,LOC107671958,LOC107560876,LOC107719918,LOC107656995,LOC107747989 other upstream 806992 10913904 ~ 10923988 (+)
G156414 LOC107707743,LOC107747988,LOC107671949,LOC107559475 other upstream 1030085 10698798 ~ 10700895 (+)
G156399 LOC107707753,LOC107672006,LOC107603149 other upstream 1158734 10563344 ~ 10572246 (+)
LOC122328708 LOC107737579,LOC107672049,LOC107565833,LOC107712694,LOC107687392,LOC566587,LOC107593419 other downstream 513832 12246193 ~ 12251982 (+)
c1qtnf12 fam132a,LOC107591142,LOC107716139,LOC107593919,LOC107687484 other downstream 2361717 14094078 ~ 14126201 (+)
si:dkey-151g10.3 LOC107737519,LOC107716153,LOC107593909,LOC107668334,LOC107673054 other downstream 2567340 14299701 ~ 14343274 (+)
pkig pkig,LOC107737509,LOC107673080,LOC107574720,LOC107564651 other downstream 2871432 14603793 ~ 14636817 (+)
itih6 LOC107737505,LOC107673092,LOC107574689,LOC107695841,LOC107716181,LOC107564649 other downstream 2877168 14609529 ~ 15153978 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_05842665_05846705 KCTD6B, KCTD6, KCTD6A misc CI01000001 null 5842665 ~ 5846924 (+)