G156843 (tktb,LOC108410447,LOC107671986,LOC103046877,LOC107737598)


Basic Information

Item Value
gene id G156843
gene name tktb,LOC108410447,LOC107671986,LOC103046877,LOC107737598
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11827741 ~ 11926375 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU232268
ttttttttatatttttttttttttttttttttttttttttATTGGATGGGCAGTTCAATTTATTCACACATTACATCAAATTCAGTGAAAAATGTTTAGACAATGATAGTGAGGGTGTTGTAACATGACATACACTTCGTCAGATCACCAAAACCAAATAGTTAATGTACTAACTTAGCAAATTGGTTGGCCAGTAGCTTATGCAACagcagtaaataaaaacaagagatACTTTTATACTTTGTTACTCCCTGAAAGCACCATTACGGCTATCATCAAATGCATCATGATACTGACTTTGTAATAATTACAGGAAGCATACAGCCAAAAGGATGAAATGACTTAATATGAAATGGTCATTGTTGTAAATGATATTCAGAAAAGTGCAAACGCAATGCAACTTTAAATCTAATTCACACTTCCAAGCCTTTAAAAACTACTAATGCAGCATTTAAGGTTTTCAAGAAGTCAAAATTGATGATGATTCAAAGAGAAAACACACCAAAGCTATGGCTGACACTAGTGACTATAGTGCACAAGTTAGAGTATTTCCACAAACTATGAAGTTAGGTATATCTGTGAGCTTCTGGAATGATAAGGATGTGTGGTGAGCTTGGTCTTTAGGATCTGGGTTAGGAGTGGCGAAAGACGAAGGGGGTTTAGGGTGGTTCAAAGAGTTTTAGTTTGCAAAAGTACGCCTGACGGCAGCAACGATACATTTGGCACTGATGCCAAACATGTCCAGAAGCTCCTGCGGCTTGCCGCTCTGAGGCACACGGCTCACGGCTAGCCGGTGCACCACAATGCCAGGCTCTTCACCCACTGCAGACAGGACGGCCTCGCCCAGACCACCTACAATGAGAGCAGAGGAACCAACGTAAAATACCTCTCAGAG
>TU232272
AAACACCAAAtgttttttttttttttTTGGATGGGCAGTTCAATTTATTCACACATTACATCAAATTCAGTGAAAAATGTTTAGACAATGATAGTGAGGGTGTTGTAACATGACATACACTTCGTCAGATCACCAAAACCAAATAGTTAATGTACTAACTTAGCAAATTGGTTGGCCAGTAGCTTATGCAACagcagtaaataaaaacaagagatACTTTTATACTTTGTTACTCCCTGAAAGCACCATTACGGCTATCATCAAATGCATCATGATACTGACTTTGTAATAATTACAGGAAGCATACAGCCAAAAGGATGAAATGACTTAATATGAAATGGTCATTGTTGTAAATGATATTCAGAAAAGTGCAAACGCAATGCAACTTTAAATCTAATTCACACTTCCAAGCCTTTAAAAACTACTAATGCAGCATTTAAGGTTTTCAAGAAGTCAAAATTGATGATGATTCAAAGAGAAAACACACCAAAGCTATGGCTGACACTAGTGACTATAGTGCACAAGTTAGAGTATTTCCACAAACTATGAAGTTAGGTATATCTGTGAGCTTCTGGAATGATAAGGATGTGTGGTGAGCTTGGTCTTTAGGATCTGGGTTAGGAGTGGCGAAAGACGAAGGGGGTTTAGGGTGGTTCAAAGAGTTTTAGTTTGCAAAAGTACGCCTGACGGCAGCAACGATACATTTGGCACTGATGCCAAACATGTCCAGAAGCTCCTGCGGCTTGCCGCTCTGAGGCACACGGCTCACGGCTAGCCGGTGCACCACAATGCCAGGCTCTTCACCCACTGCAGACAGGACGGCCTCGCCCAGACCACCTACCTCTTTGTAGTGGTCCTCTACAGTGATCACCCTTCCTCCCGTGGCACGAGCACTTGCCACAATAGTGGAGGCATCCAGGGGCTTAACAGTAAATGGGTCGATAACCCGAATGTTCACACCTGGGAAAAATATGTACTGGTTTTTAAACGCTAATTTGCAAGATTTTTAAGAAAGAGTTGTCCTTTCTTcgacaaaaaacaataaattatataaacaattgcatttaatatctATAACAGATATAATTCAGTACACaagttaatgtttttattctttaaagtgAAACTGAGGCACAGTAGTAATGTAGGGTAATCTCCCATTACAGCCAGTAGGGGCTGAACAAACCTTCTTTGGCCAGTTGGTCATGTGCTGCCAGTGCCTCATGCAGTGTTACTCCAGCTCCAATGACGGTCACCTGATCTTTGTCAGACTGCCGCAC

Function

symbol description
tktb Predicted to enable thiamine pyrophosphate binding activity and transketolase activity. Is expressed in several structures, including alar plate midbrain region; digestive system; eye; midbrain; and yolk. Orthologous to several human genes including TKTL2 (transketolase like 2).

NR:

description
Tkt protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU232268 False 895 lncRNA 0.39 2 11904890 11925798
TU232272 True 1280 lncRNA 0.41 4 11827741 11926375

Neighbor

gene id symbol gene type direction distance location
emd LOC107737610,LOC107671981,LOC107712726,LOC107560939,LOC107699568,LOC107570273 coding upstream 27825 11796494 ~ 11799916 (+)
flna flna,LOC107737611,LOC107712729,LOC107570276,LOC107699576 coding upstream 33008 11762429 ~ 11794733 (+)
dnase1l1 dnase1l3,LOC107737612,LOC107672041,LOC107560934,LOC107570280,LOC107712731 coding upstream 85870 11738795 ~ 11741871 (+)
abhd6b abhd6b,LOC107737716,LOC107712730,LOC107560889,LOC107671974,LOC107699577 coding upstream 101249 11723156 ~ 11726492 (+)
flnb LOC107737717,LOC107560870,LOC107671935 coding upstream 105455 11705759 ~ 11722286 (+)
tnnc2.1 si:rp71-17i16.4,LOC107737591,LOC107568845,LOC103044939,LOC108434838,LOC103362008,LOC102782874 coding downstream 122386 12048761 ~ 12060362 (+)
tnnc2.2 tnnc2,LOC107699597,LOC107593400,LOC107672048,LOC107737590,LOC107568846,LOC108276484,LOC108233126,LOC108434847,LOC102220434 coding downstream 135341 12061716 ~ 12064341 (+)
slc35c2 slc35c2,LOC107737589,LOC107712705,LOC107672033,LOC107699599 coding downstream 140730 12067105 ~ 12074465 (+)
LOC122329002 LOC107737588,LOC107712700,LOC107672031,LOC107699598,LOC101884357 coding downstream 149878 12076253 ~ 12098773 (+)
dpm1 dpm1,LOC107671953,LOC107737709,LOC107712706,LOC107699600 coding downstream 172647 12099022 ~ 12101573 (+)
G156823 LOC107560942,LOC107737604,LOC107712727,LOC107672007 non-coding upstream 4897 11763707 ~ 11822844 (+)
G156828 NA non-coding upstream 92804 11734256 ~ 11734937 (+)
G156701 NA non-coding upstream 171361 11655795 ~ 11656380 (+)
G156700 NA non-coding upstream 172425 11654916 ~ 11655316 (+)
G156699 asb14b,LOC107560887,LOC107671999,LOC107737718 non-coding upstream 173124 11654255 ~ 11654617 (+)
G156881 LOC107737595,LOC107671985,LOC107568839 non-coding downstream 20309 11946684 ~ 11972922 (+)
LOC122328486 NA non-coding downstream 103771 12030146 ~ 12037888 (+)
G156933 NA non-coding downstream 248155 12174530 ~ 12174915 (+)
G156931 NA non-coding downstream 277881 12204256 ~ 12205395 (+)
G157079 NA non-coding downstream 313474 12239849 ~ 12241401 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other upstream 81171 11697414 ~ 11746570 (+)
LOC122328549 smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283 other upstream 95380 11730980 ~ 11732361 (+)
G156586 NA other upstream 650708 11174421 ~ 11177033 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other upstream 742137 11077154 ~ 11085604 (+)
G156497 trim101,LOC107671958,LOC107560876,LOC107719918,LOC107656995,LOC107747989 other upstream 903753 10913904 ~ 10923988 (+)
LOC122328708 LOC107737579,LOC107672049,LOC107565833,LOC107712694,LOC107687392,LOC566587,LOC107593419 other downstream 319818 12246193 ~ 12251982 (+)
c1qtnf12 fam132a,LOC107591142,LOC107716139,LOC107593919,LOC107687484 other downstream 2167703 14094078 ~ 14126201 (+)
si:dkey-151g10.3 LOC107737519,LOC107716153,LOC107593909,LOC107668334,LOC107673054 other downstream 2373326 14299701 ~ 14343274 (+)
pkig pkig,LOC107737509,LOC107673080,LOC107574720,LOC107564651 other downstream 2677418 14603793 ~ 14636817 (+)
itih6 LOC107737505,LOC107673092,LOC107574689,LOC107695841,LOC107716181,LOC107564649 other downstream 2683154 14609529 ~ 15153978 (+)

Expression


Co-expression Network