LOC122328486


Basic Information

Item Value
gene id LOC122328486
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12030146 ~ 12037888 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU232372
TCACATGCACTGTTCCCTCGTGGAGGAGGAGTCCACGAGGTCTTACCTCGCGCTGCATTATAAACAGACAGACTGAGAGTGACATCCAGCTaactgactccagatcagattGGGACAGGTCTCAGCGGGGCCGTGCCACTCAGTTCAGGCAGCCGGTTGGCTGTGACATCCATGGAGATCCTGTAACCCAGGTGACAGAAAGCACCTGATTCCTCTTAGGAATGAGGACAAATACAGTCCCATCCCTTCTGAC
>XR_006247799.1
CGTGCGCAGCAGCGCTCCTCTCACGAGCTGCGCGTTCACCTGTTCACATGCACTGTTCCCTCGTGGAGGAGGAGTCCACGAGGTCTTACCTCGCGCTGCATTATAAACAGACAGACTGAGAGTGACATCCAGCTaactgactccagatcagattGGGACAGGTCTCAGCGGGGCCGTGCCACTCAGTTCAGGCAGCCGGTTGGCTGTGACATCCATGGAGATCCTGTAACCCAGTGCCCATGGTTTGCCCATACGAAGGGGACGCCATACCTTTCAGCACGACCGATTTCAAATGGTGCTAGAAAACCCCAGTCCACTCTGAACACCAGAGGAAATCAGTCACGCTACAAAAGGGCCCCTCTGAAGGACGCTGCAGTGTGTCATAGCAGCTTAGCCATGGACCATCAGTGCTGAAAAGAGGGGACCTCCCGGAATCAGCATGGCAGCGGATCTATGTGAGACGTGGGAAATaaccagcacaaacacacacatatttttcgAAACATGCTTTAATTGCCTTTTAAAATTATACACTTGTATTATTTGACGCCTTTTTAATACATAACATTGAAATAACATTCTTCAGTCATTCGAGTTTAAATGAATATTCACTCATAAGGACAATTCACCAGAAATGGtgaattactcacccttgtgttgttccaaaccagaatgctgtcatttttagaacacaaaaaaagtcaaattattttcacacaaatatttgtGATAAATGGCACTTTCTAGTGTccgttaaaaacaaaataaaagtaggaagacaccttaaaatataaaGGTTTCAAAAGTGTCATAGA
>XR_006247800.1
CGTGCGCAGCAGCGCTCCTCTCACGAGCTGCGCGTTCACCTGTTCACATGCACTGTTCCCTCGTGGAGGAGGAGTCCACGAGGTCTTACCTCGCGCTGCATTATAAACAGACAGACTGAGAGTGACATCCAGCTaactgactccagatcagattGGGACAGGTCTCAGCGGGGCCGTGCCACTCAGTTCAGGCAGCCGGTTGGCTGTGACATCCATGGAGATCCTGTAACCCAGTGCCCATGGTTTGCCCATACGAAGGGGACGCCATACCTTTCAGCACGACCGATTTCAAATGGTGCTAGAAAACCCCAGTCCACTCTGAACACCAGAGGAAATCAGTCACGCTACAAAAGGGCCCCTCTGAAGGACGCTGCAGTGTGTCATAGCAGCTTAGCCATGGACCATCAGTGCTGAAAAGAGGGGACCTCCCGGAATCAGCATGGCAGCGGATCTATGTGCCGTAAGAGAGAGCTTGTAAAGCTCTTATACAGAAGAACGAACAGTCCCAAGAAAGATACTCAGCCAGTGTGTGGGATGACCATGTGCTCATCCTTGTCAGAAACACAGTGATGCCGtcttggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgcgtaagaaagagtgaaataaataaatgctgagcTGCTTTAAAGACAGAACTTAATTCaatgagaaatgtaaaaataatgaaaaataccTCAATAAGACTGAAGGAAGATCAGCATGATGTGAGGATGCAGTGGAGGAGAGACGAGAGCCAAGAGAAGCATGGAGGCTTGTCTGTCTGGAAACAGTCTCTCAGACAGACTTGACAGCCCCCCGCCCATGCCCCCCAAACTGCTGGCTTTGAAAACACCCCTACACCCACCAAGCACCCCTCCCTTCCCTCCCTACCCTCACCAACAACCACGCCATCTCCACAACATGGCCTTTGCGCAGGGAATTTCACTCTTTTATGTCGCACTCTTGGTACTTTTagcaaaaactaaaactctTATTTCAGAGTCTATTGTTAACAAGCAGCGTGTTTTTAGGTCTGTTGTCTCATGACCCAGTGCATGTGAGGTGAATATGGGCCAGGGTGCCCTCTAAAGGCAACCGCTGTAAATAGCAGGAGGGTACTCTCAAGAGAGAGCGTGATTATACTGTTTACATGCAAGGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU232372 False 253 lncRNA 0.53 2 12030189 12032840
XR_006247799.1 False 815 lncRNA 0.45 4 12030146 12034957
XR_006247800.1 True 1170 lncRNA 0.50 5 12030146 12037888

Neighbor

gene id symbol gene type direction distance location
tnnc1b tnnc1b,LOC107671989,LOC107568847,LOC108276054,LOC107593406,LOC105890642,LOC103374679 coding upstream 105551 11922884 ~ 11924595 (+)
cfap126 NA coding upstream 161709 11866718 ~ 11868437 (+)
emd LOC107737610,LOC107671981,LOC107712726,LOC107560939,LOC107699568,LOC107570273 coding upstream 230230 11796494 ~ 11799916 (+)
flna flna,LOC107737611,LOC107712729,LOC107570276,LOC107699576 coding upstream 235413 11762429 ~ 11794733 (+)
dnase1l1 dnase1l3,LOC107737612,LOC107672041,LOC107560934,LOC107570280,LOC107712731 coding upstream 288275 11738795 ~ 11741871 (+)
tnnc2.1 si:rp71-17i16.4,LOC107737591,LOC107568845,LOC103044939,LOC108434838,LOC103362008,LOC102782874 coding downstream 10873 12048761 ~ 12060362 (+)
tnnc2.2 tnnc2,LOC107699597,LOC107593400,LOC107672048,LOC107737590,LOC107568846,LOC108276484,LOC108233126,LOC108434847,LOC102220434 coding downstream 23828 12061716 ~ 12064341 (+)
slc35c2 slc35c2,LOC107737589,LOC107712705,LOC107672033,LOC107699599 coding downstream 29217 12067105 ~ 12074465 (+)
LOC122329002 LOC107737588,LOC107712700,LOC107672031,LOC107699598,LOC101884357 coding downstream 38365 12076253 ~ 12098773 (+)
dpm1 dpm1,LOC107671953,LOC107737709,LOC107712706,LOC107699600 coding downstream 61134 12099022 ~ 12101573 (+)
G156881 LOC107737595,LOC107671985,LOC107568839 non-coding upstream 57224 11946684 ~ 11972922 (+)
G156843 tktb,LOC108410447,LOC107671986,LOC103046877,LOC107737598 non-coding upstream 103771 11827741 ~ 11926375 (+)
G156823 LOC107560942,LOC107737604,LOC107712727,LOC107672007 non-coding upstream 207302 11763707 ~ 11822844 (+)
G156828 NA non-coding upstream 295209 11734256 ~ 11734937 (+)
G156701 NA non-coding upstream 373766 11655795 ~ 11656380 (+)
G156933 NA non-coding downstream 136642 12174530 ~ 12174915 (+)
G156931 NA non-coding downstream 166368 12204256 ~ 12205395 (+)
G157079 NA non-coding downstream 201961 12239849 ~ 12241401 (+)
G157081 NA non-coding downstream 207986 12245874 ~ 12246101 (+)
G157084 NA non-coding downstream 315202 12353090 ~ 12386381 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other upstream 283576 11697414 ~ 11746570 (+)
LOC122328549 smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283 other upstream 297785 11730980 ~ 11732361 (+)
G156586 NA other upstream 853113 11174421 ~ 11177033 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other upstream 944542 11077154 ~ 11085604 (+)
G156497 trim101,LOC107671958,LOC107560876,LOC107719918,LOC107656995,LOC107747989 other upstream 1106158 10913904 ~ 10923988 (+)
LOC122328708 LOC107737579,LOC107672049,LOC107565833,LOC107712694,LOC107687392,LOC566587,LOC107593419 other downstream 208305 12246193 ~ 12251982 (+)
c1qtnf12 fam132a,LOC107591142,LOC107716139,LOC107593919,LOC107687484 other downstream 2056190 14094078 ~ 14126201 (+)
si:dkey-151g10.3 LOC107737519,LOC107716153,LOC107593909,LOC107668334,LOC107673054 other downstream 2261813 14299701 ~ 14343274 (+)
pkig pkig,LOC107737509,LOC107673080,LOC107574720,LOC107564651 other downstream 2565905 14603793 ~ 14636817 (+)
itih6 LOC107737505,LOC107673092,LOC107574689,LOC107695841,LOC107716181,LOC107564649 other downstream 2571641 14609529 ~ 15153978 (+)

Expression


Co-expression Network