LOC122328546 (rpl10)



Basic Information


Item Value
gene id LOC122328546
gene name rpl10
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11741400 ~ 11746620 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>TU232410
GCGGAAATTCAGTGTTCTTCCTTTCTTCCATTAGGTTGCAACCATGGGCCGCCGTCCAGCCCGTTGCTACAGATACTGTAAGAACAAGCCTTACCCGAAGTCCCGTTTCTGTCGAGGTGTTCCTGATCCCAAGATCAGGATCTTCGACTTGGGCAGGAAGAAGGCTAAGGTGGATGAGTTCCCCCTGTGTGCTCACATGGTATCTGATGAATATGAGCAGCTGTCCAGTGAAGCTCTTGAGGCTGCCCGTATCTGCGCCAACAAGTACATGGTGAAGACCTGCGGAAAGATGGTTTCCACATCCGTGTGCGCCTGCACCCTTTCCATGTTATCCGCATCAACAAAATGTTATCCTGTGCTGGAGCTGATAGGCTCCAGACCGGTATGCGCGGTGCTTTTGGTAAGCCTCAGGGCACAGTGGCTCGTGTGCACATTGGCCAGGTGATCATGTCCGTGCGCACAAAGGCTCAGAACAAGGAACATGTGATCGAGGCTCTGAGGAGAGCTAAGTTCAAGTTCCCTGGCCGTCAGAAGatccACATCTCCAAGAAGTATGGATTCACGAAATTCAATGCCTGTGACTTTGATGACATGCTGGCAGAGAAGCGTGTGATCCCTGATGGCTGTGGGGTGAAGTACATTCCCAGTCGTGGACCCCTGAGCCGCTGGAAGGCCCTGCACGCCAACTAAGCACTCGCACTTATTCATCTGTGTGAACCAAGGCTTCAGTGATCACAAATAAAGTCCATTTGATTTTCAGACTTcgtttgtttttacaaattgcTTTTCTTACCTGCCATTTAAGGGAAATTTAACTTTTAGATTTagaaaatttaactttttatactGAGTGGATGTCATGTTTTCACAGAGCACTACAGTATGTTTAGCCACATGGCGTCAAGCATGACTTAACAGTATTTAAAAGGTAGTAAATGTCAGCAATACACATTAGGGGATTACCTTTGCGTAGTTTTGTGGATTCTATTTGTACTTTTGATAATTTCATTAATGCTCCCAGTCAaaaaatttcttttattatgGAATATTTCTCAGTAAcctacaaaacacattttacttgtattagtattttttttttcctatttatcaAAAAGAGATATTATAAAAGGTATTAAACAATGTTCCAGCACATTCTGCAGACATGTAAGGGTTCAAGTATATAACAGCTGTGTAACAGCAAAGTAAAATTCCACTTCAGGTGATGAATAATCCACTTTTGGTTCATATGATCGATTGCAGTAGCGGTAAAATGATCAGAATGAATGTTGTAGGCAGAAGACACGAAGCTTTGCTGTTTCTTGAGAGGAACCCAGACTTCTCAGTTTTGAGTAGCACTTCAATGGGGTAGTGATCACTCACTTCTAGAGCCTATAATAGACAGCCTTCAGTTTAAATCACATTCAAgtgagcaaaataaaacacaatcttGATTCTAGTTTACCTCTGCCTCTGTAAGGTGGAGTTCC
>TU232414
GCGGAAATTCAGTGTTCTTCCTTTCTTCCATTAGGTTGCAACCATGGGCCGCCGTCCAGCCCGTTGCTACAGATACTGTAAGAACAAGCCTTACCCGAAGTCCCGTTTCTGTCGAGGTGTTCCTGATCCCAAGATCAGGATCTTCGACTTGGGCAGGAAGAAGGCTAAGGTGGATGAGTTCCCCCTGTGTGCTCACATGGTATCTGATGAATATGAGCAGCTGTCCAGTGAAGCTCTTGAGGCTGCCCGTATCTGCGCCAACAAGTACATGGTGAAGACCTGCGGAAAGATGGTTTCCACATCCGTGTGCGCCTGCACCCTTTCCATGTTATCCGCATCAACAAAATGTTATCCTGTGCTGGAGCTGATAGGCTCCAGACCGGTATGCGCGGTGCTTTTGGTAAGCCTCAGGGCACAGTGGCTCGTGTGCACATTGGCCAGGTGATCATGTCCGTGCGCACAAAGGCTCAGAACAAGGAACATGTGATCGAGGCTCTGAGGAGAGCTAAGTTCAAGTTCCCTGGCCGTCAGAAGatccaCATCTCCAAGAAGTATGGATTCACGAAATTCAATGCCTGTGACTTTGATGACATGCTGGCAGAGAAGCGTGTGATCCCTGATGGCTGTGGGGTGAAGTACATTCCCAGTCGTGGACCCCTGAGCCGCTGGAAGGCCCTGCACGCCAACTAAGCACTCGCACTTATTCATCTGTGTGAACCAAGGCTTCAGTGATCATGTCCGTGCGCACAAAGGCTCAGAACAAGGAACATGTGATCGAGGCTCTGAGGAGAGCTAAGTTCAAGTTCCCTGGCCGTCAGAAGatccACATCTCCAAGAAGTATGGATTCACGAAATTCAATGCCTGTGACTTTGATGACATGCTGGCAGAGAAGCGTGTGATCCCTGATGGCTGTGGGGTGAAGTACATTCCCAGTCGTGGACCCCTGAGCCGCTGGAAGGCCCTGCACGCCAACTAAGCACTCGCACTTATTCATCTGTGTGAACCAAGGCTTCAGTGATCACAAATAAAGTCCATTTGATTTTCAGACTTcgtttgtttttacaaattgcTTTTCTTACCTGCCATTTAAGGGAAATTTAACTTTTAGATTTagaaaatttaactttttatactGAGTGGATGTCATGTTTTCACAGAGCACTACAGTATGTTTAGCCACATGGCGTCAAGCATGACTTAACAGTATTTAAAAGGTAGTAAATGTCAGCAATACACATTAGGGGATTACCTTTGCGTAGTTTTGTGGATTCTATTTGTACTTTTGATAATTTCATTAATGCTCCCAGTCAaaaaatttcttttattatgGAATATTTCTCAGTAAcctacaaaacacattttacttgtattagtattttttttttcctatttatcaAAAAGAGATATTATAAAAGGTATTAAACAATGTTCCAGCACATTCTGCAGACATGTAAGGGTTCAAGTATATAACAGCTGTGTAACAGCAAAGTAAAATTCCACTTCAGGTGATGAATAATCCACTTTTGGTTCATATGATCGATTGCAGTAGCGGTAAAATGATCAGAATGAATGTTGTAGGCAGAAGACACGAAGCTTTGCTGTTTCTTGAGAGGAACCCAGACTTCTCAGTTTTGAGTAGCACTTCAATGGGGTAGTGATCACTCACTTCTAGAGCCTATAATAGACAGCCTTCAGTTTAAATCACATTCAAgtgagcaaaataaaacacaatcttGATTCTAGTTTACCTCTGCCTCTGTAAGGTGGAGTTCC
>TU232418
GCGGAAATTCAGTGTTCTTCCTTTCTTCCATTAGGTTGCAACCATGGGCCGCCGTCCAGCCCGTTGCTACAGATACTGTAAGAACAAGCCTTACCCGAAGTCCCGTTTCTGTCGAGGTGTTCCTGATCCCAAGATCAGGATCTTCGACTTGGGCAGGAAGAAGGCTAAGGTGGATGAGTTCCCCCTGTGTGCTCACATGGTATCTGATGAATATGAGCAGCTGTCCAGTGAAGCTCTTGAGGCTGCCCGTATCTGCGCCAACAAGTACATGGTGAAGACCTGCGGAAAGATGGTTTCCACATCCGTGTGCGCCTGCACCCTTTCCATGTTATCCGCATCAACAAAATGTTATCCTGTGCTGGAGCTGATAGGCTCCAGACCGGTATGCGCGGTGCTTTTGGTAAGCCTCAGGGCACAGTGGCTCGTGTGCACATTGGCCAGGTGATCATGTCCGTGCGCACAAAGGCTCAGAACAAGGAACATGTGATCGAGGCTCTGAGGAGAGCTAAGTTCAAGTTCCCTGGCCGTCAGAAGatccaCATCTCCAAGAAGTATGGATTCACGAAATTCAATGCCTGTGACTTTGATGACATGCTGGCAGAGAAGCGTGTGATCCCTGATGGCTGTGGGGTGAAGTACATTCCCAGTCGTGGACCCCTGAGCCGCTGGAAGGCCCTGCACGCCAACTAAGCACTCGCACTTATTCATCTGTGTGAACCAAGGCTTCAGTGATCACAAATAAAGTCCATTATTTGATTTGcagacttcattttttttttcaagttgaGTTTCTACTGAAaaaaaaaacttcttactttcagtttaaaaaaaatcctgaatcCTGAATGGATGTCATGCTGAACTTCGGTTTTATCAGACCATAACACACTGCAGCATGATTTCCTGTTTTGCTTGAAGCATGACTTTGCTAATTGAACCACATCTGAGTAAATTCTCAGCTGagtgtttaaaatgtagctGTAAAAGTATTCCAGTAATGCAAGTCACCTAAATTAGGGGATTGCCTCGGCGTAGTTTTTTGCGGATTCTATTTGTACTTCATTTGTGATAAAAAATTTTTGATGAAGGCTCCCAGTCAAAACATTGCTCTTTATTAAGAGAATATTCCTCAGTAATCTACAGAAACGGTTTGTATTTAATGAATCAAGAAGTTACACAGTAACTACAAAAAATATAGAAGGTATTAAACAATGGTCAATCACATCCACTATCCAGCATGTTCTGCAGATGTGTATGGGTTGAAGTATATAACAGAGGTAAAATCTCCACTTCAGATGAGATGAAAAATTCACTTTTGGTTTATGTGAT
>XM_043224295.1
GGTGAGTGCGTGGTGAGGGCGCGCTCCGTCGCTCTCGAGATTTGTCgaaaatttatttgtttacgcACTTACGAATACACGTTTCCGTCTTTTAAGTCGTTGTTATTGTGTCTATTACAGGTTGCAACCATGGGCCGCCGTCCAGCCCGTTGCTACAGATACTGTAAGAACAAGCCTTACCCGAAGTCCCGTTTCTGTCGAGGTGTTCCTGATCCCAAGATCAGGATCTTCGACTTGGGCAGGAAGAAGGCTAAGGTGGATGAGTTCCCCCTGTGTGCTCACATGGTATCTGATGAATATGAGCAGCTGTCCAGTGAAGCTCTTGAGGCTGCCCGTATCTGCGCCAACAAGTACATGGTGAAGACCTGCGAAGATGGTTTCCACATCCGTGTGCGCCTGCACCCTTTCCATGTTATCCGCATCAACAAAATGTTATCCTGTGCTGGAGCTGATAGGCTCCAGACCGGTATGCGCGGTGCTTTTGGTAAGCCTCAGGGCACAGTGGCTCGTGTGCACATTGGCCAGGTGATCATGTCCGTGCGCACAAAGGCTCAGAACAAGGAACATGTGATCGAGGCTCTGAGGAGAGCTAAGTTCAAGTTCCCTGGCCGTCAGAAGatccaCATCTCCAAGAAGTATGGATTCACGAAATTCAATGCCTGTGACTTTGATGACATGCTGGCAGAGAAGCGTGTGATCCCTGATGGCTGTGGGGTGAAGTACATTCCCAGTCGTGGACCCCTGAGCCGCTGGAAGGCCCTGCACGCCAACTAAGCACTCGCACTTATTCATCTGTGTGAACCAAGGCTTCAGTGATCACAAATAAAGTCCATTATTTGA

Function


symbol description
rpl10 Enables translation regulator activity. Involved in embryonic brain development and regulation of translation. Acts upstream of or within brain development. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in head and midbrain hindbrain boundary. Human ortholog(s) of this gene implicated in autistic disorder and syndromic X-linked mental retardation 35. Orthologous to several human genes including RPL10 (ribosomal protein L10).

NR:

description
60S ribosomal protein L10

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU232410 False 1487 TUCP 0.43 7 11741400 11746620
TU232414 True 1774 TUCP 0.44 9 11741400 11746620
TU232418 False 1329 TUCP 0.44 8 11744119 11746620
XM_043224295.1 False 840 mRNA 0.51 7 11744720 11746587
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Neighbor


gene id symbol gene type direction distance location
LOC122328548 LOC107560872,LOC107712665,LOC107737683,LOC107671934 coding downstream 3815 11736897 ~ 11737585 (-)
ognb zgc:193598,LOC107671963,LOC107737613,LOC107570281,LOC107699558 coding downstream 6454 11732231 ~ 11734946 (-)
dnah12 dnah12 coding downstream 57993 11657491 ~ 11683407 (-)
asb14b asb14b,LOC107560887,LOC107671999,LOC107737718,LOC108436293,LOC108276494 coding downstream 84797 11651399 ~ 11656603 (-)
tasorb LOC107737622,LOC107671998,LOC107712737,LOC107570279 coding downstream 90129 11638613 ~ 11651271 (-)
haus7 LOC107737606,LOC107712722,LOC107560873,LOC107671952,LOC107593450 coding upstream 55158 11801778 ~ 11805140 (-)
LOC122329113 si:dkey-93l1.9,LOC107699586,LOC107593449,LOC107671978,LOC107699561,LOC107737609,LOC107576394 coding upstream 59736 11806356 ~ 11807389 (-)
ccnq fam58a,LOC107737713,LOC107671950,LOC107560943,LOC107699584,LOC107593410,LOC107712723 coding upstream 115267 11861887 ~ 11866571 (-)
b4galt3 LOC107737602,LOC107593408,LOC107672040,LOC107699583 coding upstream 121822 11868442 ~ 11880517 (-)
bgnb bgnb,LOC107737601,LOC107672034,LOC107560944,LOC107699588,LOC107712721 coding upstream 134766 11881386 ~ 11900643 (-)
G156812 NA non-coding downstream 201355 11539623 ~ 11540045 (-)
LOC122328925 NA non-coding downstream 364712 11376177 ~ 11376688 (-)
G156785 NA non-coding downstream 387572 11353159 ~ 11353828 (-)
G156762 NA non-coding downstream 496580 11242600 ~ 11244820 (-)
G156759 NA non-coding downstream 578381 11162664 ~ 11163019 (-)
G156962 NA non-coding upstream 15820 11762440 ~ 11763023 (-)
G156971 NA non-coding upstream 34947 11781567 ~ 11782366 (-)
G156972 NA non-coding upstream 46983 11793603 ~ 11851710 (-)
G156978 NA non-coding upstream 308626 12055246 ~ 12061368 (-)
G156973 NA non-coding upstream 314827 12061447 ~ 12064715 (-)
G156746 NA other downstream 636177 11100744 ~ 11105223 (-)
LOC122328798 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other downstream 1063250 10675680 ~ 10678150 (-)
ankrd52a ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831,LOC107723718 other downstream 1355433 10218473 ~ 10385967 (-)
LOC122328779 taf8,LOC107723763,LOC107756368,LOC107549030,LOC107671856,LOC107594013,LOC107701755 other downstream 1374031 10363905 ~ 10367369 (-)
LOC122329224 NA other downstream 1381614 10355941 ~ 10359786 (-)
atp2b3b atp2b3b,atp2b3,LOC107737604,LOC107712727,LOC107672007,LOC107593407 other upstream 17089 11763709 ~ 11857968 (-)
si:dkey-93l1.9 si:dkey-93l1.9,LOC107699586,LOC107593449,LOC107671978,LOC107699561,LOC107576394,LOC107737609 other upstream 53302 11799922 ~ 11801632 (-)
G156985 NA other upstream 176224 11922844 ~ 11924650 (-)
G157367 NA other upstream 1394458 13141078 ~ 13217408 (-)
G157373 LOC107591099,LOC107703059,LOC107737560 other upstream 1533636 13280256 ~ 13282327 (-)

Expression


LOC122328546(rpl10) Expression in all Baseline Samples

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LOC122328546(rpl10) Expression in each Bioproject

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LOC122328546(rpl10) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 25000.
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Co-expression Network