G157079


Basic Information

Item Value
gene id G157079
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12239849 ~ 12241401 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU232612
CTGCCCTAAATGACTCACAAAATCTCAAATAAAGAGCCGCAGCGTCTAAAATACAGGATGTACCACATTGCGTCACTCTGCACACTGGCCACTTTCTAACAAGCATAGTTTCGTTATGACAGTGAGGGAGGGTGAACACTGAACTCACTGCTTGTGTAACGAACATGAGCACTGTCCATATGGATATGATTATTGGGGTGAGCCGTAAGCCAACAGAATGTGTTCTCTTTTTGTTATGACATCTGACCAGCCAGGCCAAAGCGAAGAACGAATGATTTCCACTCGAAACCAGCATGCATCATGGTCACTCTGATGGAATCAGGAAAAAGCCAGGCCAGGAACTGTAACTGCTCAACATGACTCGGTGCGTGAGTCACAGGATGTAGCTTGTGAGGTGAGTGCCGGCTGAAAAACGCGGAGGCAGCAGCAGACTCCCGGATTCCAAAACAAGTTCCTGGCTGGGACCTCAGAGGAAATCTGTAGGTCTGAATAGACAGACCGCTTCCGTGTTTACAACCGGATACTCCTGTCCGCACATGACTTGTTACTCCCtctcactttttttaatctcttctgGCCTTCAGCAAGAATGATCTGACATTAGCGTAACAGTGTGGTCAGCATGATTTTTTTGACTCTCCAGGGTTGCATTTagctgaaaatgtcaaaataaagtattactgtgaaatatttttacaatttaaaaagagaattttacaatttaaattaaaagaaaagagtACTATTCCAAAATTTTGGtctaataagaataataagtAGTGTAAATAGCAGATCAGTATGTTGGCAAGCCAACCAAAATATctgcatgaaaatgttaaatctgAAATATCAGCATAATACTGCAGACCTCAGTGctacgtgatccttcagaaatcatgcaaATATGCTGCTTTAATGTGTACAAATTTCTGTTTTACAGAAATTCCATCTCTATATCTgtcaaataatacaatataataccATTATCGGgatcatg

Function

GO:

id name namespace
GO:0048732 gland development biological_process
GO:0009063 cellular amino acid catabolic process biological_process
GO:0009078 pyruvate family amino acid metabolic process biological_process
GO:0009080 pyruvate family amino acid catabolic process biological_process
GO:1901605 alpha-amino acid metabolic process biological_process
GO:1901606 alpha-amino acid catabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0042851 L-alanine metabolic process biological_process
GO:0042853 L-alanine catabolic process biological_process
GO:0061008 hepaticobiliary system development biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0001889 liver development biological_process
GO:0006520 cellular amino acid metabolic process biological_process
GO:0006522 alanine metabolic process biological_process
GO:0006524 alanine catabolic process biological_process
GO:0016054 organic acid catabolic process biological_process
GO:0005102 signaling receptor binding molecular_function
GO:0005179 hormone activity molecular_function
GO:0030545 receptor regulator activity molecular_function
GO:0048018 receptor ligand activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU232612 True 997 lncRNA 0.41 2 12239849 12241401

Neighbor

gene id symbol gene type direction distance location
zgc:154075 zgc:154075,LOC107712677,LOC107699610,LOC107593441,LOC108434639 coding upstream 3872 12229968 ~ 12235977 (+)
ttc34 ttc34,LOC107671969,LOC107737580,LOC107565827 coding upstream 11522 12221793 ~ 12228327 (+)
si:ch211-112c15.8 NA coding upstream 18913 12213370 ~ 12220936 (+)
ccdc30 ccdc30,LOC107737582,LOC107672059,LOC107699607,LOC107712696,LOC107565824 coding upstream 35730 12188494 ~ 12204119 (+)
usp21 usp21,LOC107737585,LOC107565835,LOC107593392,LOC107699606 coding upstream 52724 12183097 ~ 12187125 (+)
pax7b pax7b,LOC107672046,LOC107593389,LOC107687391,LOC107565832 coding downstream 11324 12252725 ~ 12311254 (+)
kcnab2b kcnab2b,LOC107687393,LOC105894315,LOC107712982,LOC107672035,LOC107737578,LOC108434650,LOC108276490 coding downstream 91205 12332606 ~ 12384111 (+)
emc1 emc1,LOC107593385,LOC107591116 coding downstream 199655 12441056 ~ 12449532 (+)
ubr4 ubr4,LOC107687395 coding downstream 208869 12450270 ~ 12490854 (+)
iffo2a LOC107737575,LOC107712691,LOC107703080,LOC107591153,LOC107593384,LOC107687398 coding downstream 250465 12491866 ~ 12509002 (+)
G156931 NA non-coding upstream 34454 12204256 ~ 12205395 (+)
G156933 NA non-coding upstream 64934 12174530 ~ 12174915 (+)
LOC122328486 NA non-coding upstream 201961 12030146 ~ 12037888 (+)
G156881 LOC107737595,LOC107671985,LOC107568839 non-coding upstream 266927 11946684 ~ 11972922 (+)
G156843 tktb,LOC108410447,LOC107671986,LOC103046877,LOC107737598 non-coding upstream 313474 11827741 ~ 11926375 (+)
G157081 NA non-coding downstream 4473 12245874 ~ 12246101 (+)
G157084 NA non-coding downstream 111689 12353090 ~ 12386381 (+)
G157265 NA non-coding downstream 487643 12729044 ~ 12787715 (+)
G157294 NA non-coding downstream 611840 12853241 ~ 12853832 (+)
G157317 NA non-coding downstream 748400 12989801 ~ 13040412 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other upstream 493279 11697414 ~ 11746570 (+)
LOC122328549 smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283 other upstream 507488 11730980 ~ 11732361 (+)
G156586 NA other upstream 1062816 11174421 ~ 11177033 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other upstream 1154245 11077154 ~ 11085604 (+)
G156497 trim101,LOC107671958,LOC107560876,LOC107719918,LOC107656995,LOC107747989 other upstream 1315861 10913904 ~ 10923988 (+)
LOC122328708 LOC107737579,LOC107672049,LOC107565833,LOC107712694,LOC107687392,LOC566587,LOC107593419 other downstream 4792 12246193 ~ 12251982 (+)
c1qtnf12 fam132a,LOC107591142,LOC107716139,LOC107593919,LOC107687484 other downstream 1852677 14094078 ~ 14126201 (+)
si:dkey-151g10.3 LOC107737519,LOC107716153,LOC107593909,LOC107668334,LOC107673054 other downstream 2058300 14299701 ~ 14343274 (+)
pkig pkig,LOC107737509,LOC107673080,LOC107574720,LOC107564651 other downstream 2362392 14603793 ~ 14636817 (+)
itih6 LOC107737505,LOC107673092,LOC107574689,LOC107695841,LOC107716181,LOC107564649 other downstream 2368128 14609529 ~ 15153978 (+)

Expression


Co-expression Network