G157471 (epha2)


Basic Information

Item Value
gene id G157471
gene name epha2
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 13939406 ~ 13939898 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU233186
TCAAGAGCTCCATTTTCCATGTACTCGGTCACAATCATGGCATGCTTGACtgaaaagaaacacacaaagagagaaagcgacttaacaaaatgaaaagaaagaacaaataGTAGTTCtcagtaaatattttcagaggatAAAACTCTGTAACAAGTaacaacaaaaacgtttattaatatttatttaatacaacaCTTCTACAGTACaataaatggtaacactttattttgaggcCCCCTTttgaacataatttttttttaatgctaatttattctaaaaatagaTGTAGTCTTGATACGGCACTCACATTTGGTGACCACCCCCTCCAGTCGGATGATGTTCTGATGTGAGAACTGTCCCATGATGCTGGCCTCGCTGAGGAAGTCCTgcctctgtttctctgtgtatCCTGGCTTCAGCGTCTTTATAGCAACAGCTGTTTCCTTCCGACCGGGAGCTTTCAGAATTCCTCGATACACCTCTCCAAACTCAC

Function

symbol description
epha2 Enables growth factor binding activity and transmembrane receptor protein tyrosine kinase activity. Involved in several processes, including activation of GTPase activity; intracellular signal transduction; and regulation of intracellular signal transduction. Located in several cellular components, including focal adhesion; lamellipodium; and tight junction. Is integral component of plasma membrane. Implicated in cataract 6 multiple types.

NR:

description
PREDICTED: ephrin type-A receptor 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU233186 True 493 lncRNA 0.39 1 13939406 13939898

Neighbor

gene id symbol gene type direction distance location
clcnk clcnk,LOC107737667,LOC107716123,LOC107687482,LOC107593941 coding upstream 27656 13905088 ~ 13911750 (+)
LOC122328345 LOC107591092,LOC107673087,LOC107737549,LOC107716117,LOC101883939,LOC107593944 coding upstream 107961 13824959 ~ 13831445 (+)
ttll10 LOC107591093,LOC107716116,LOC107593935,LOC107687423 coding upstream 114869 13804114 ~ 13824537 (+)
ptpn11b ptpn11b,LOC107591094,LOC107737552,LOC107593936,LOC107673095,LOC107687422,LOC107716115 coding upstream 160732 13751746 ~ 13778674 (+)
agrn agrn,LOC107591095,LOC107673061,LOC107593945,LOC107737670,LOC107716114 coding upstream 192234 13538953 ~ 13747172 (+)
szrd1 szrd1,LOC107673108,LOC107716129,LOC107687433,LOC107737539,LOC107591082 coding downstream 68322 14008220 ~ 14012879 (+)
mlh3 LOC107673081,LOC107591079,LOC107737666,LOC107687437 coding downstream 104885 14044783 ~ 14050528 (+)
kansl2 kansl2,LOC107687436,LOC107716132,LOC107737532,LOC107591080,LOC107673082,LOC107593923 coding downstream 110793 14050691 ~ 14056567 (+)
LOC122329331 NA coding downstream 114466 14054364 ~ 14054500 (+)
LOC122329330 NA coding downstream 116787 14056685 ~ 14056821 (+)
G157446 epha2b,epha2,LOC107737541,LOC107591085,LOC107716125,LOC107687430,LOC107593930,LOC102306962,LOC102194419 non-coding upstream 52 13938443 ~ 13939354 (+)
G157459 NA non-coding upstream 38314 13897831 ~ 13901092 (+)
G157417 NA non-coding upstream 56447 13801420 ~ 13882959 (+)
G157423 LOC106566923 non-coding upstream 77200 13858965 ~ 13862206 (+)
G157408 her9,LOC107716081,LOC107593950,LOC107687478,LOC107737700,LOC107703052 non-coding upstream 444030 13411670 ~ 13495376 (+)
G157472 NA non-coding downstream 380 13940278 ~ 13940490 (+)
G157473 NA non-coding downstream 968 13940866 ~ 13941487 (+)
G157474 NA non-coding downstream 2123 13942021 ~ 13942432 (+)
G157475 LOC107737541,LOC107591085,LOC107673100,LOC107593930,LOC107716125,LOC107687430 non-coding downstream 3691 13943589 ~ 13943919 (+)
G157476 LOC107591085,LOC107673100,LOC107737541,LOC107687430,LOC107593930,LOC107716125 non-coding downstream 4187 13944085 ~ 13953472 (+)
LOC122328708 LOC107737579,LOC107672049,LOC107565833,LOC107712694,LOC107687392,LOC566587,LOC107593419 other upstream 1687424 12246193 ~ 12251982 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other upstream 2192836 11697414 ~ 11746570 (+)
LOC122328549 smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283 other upstream 2207045 11730980 ~ 11732361 (+)
G156586 NA other upstream 2762373 11174421 ~ 11177033 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other upstream 2853802 11077154 ~ 11085604 (+)
c1qtnf12 fam132a,LOC107591142,LOC107716139,LOC107593919,LOC107687484 other downstream 154180 14094078 ~ 14126201 (+)
si:dkey-151g10.3 LOC107737519,LOC107716153,LOC107593909,LOC107668334,LOC107673054 other downstream 359803 14299701 ~ 14343274 (+)
pkig pkig,LOC107737509,LOC107673080,LOC107574720,LOC107564651 other downstream 663895 14603793 ~ 14636817 (+)
itih6 LOC107737505,LOC107673092,LOC107574689,LOC107695841,LOC107716181,LOC107564649 other downstream 669631 14609529 ~ 15153978 (+)
LOC122328906 LOC107673074,LOC107737500,LOC107695835,LOC107716175,LOC107574686,LOC107564653,LOC107576192 other downstream 740962 14680860 ~ 14686618 (+)

Expression


Co-expression Network