G157551


Basic Information

Item Value
gene id G157551
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14373577 ~ 14375050 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU233302
TCTTGGAGTCGTTGCTATCGCTTGACGAGAACCATCTTCTCATCATGAGAGCGAAgTGGCGAAAGAAGCGCATGCGCAGgctgAAGCGTAAAAGGAGAAAGATGAGGCAGAGGTCAAAGTAAACTGGACCCTGTTTGCTGAAGCTGAGAGTGCTCCTCCACTTCAATCTCCTCAGCAAGAGTCTGCTGGAAGCCCAACTGAAGCTCCACTCATTCGCCATCTGTGAGGCCTGCTTTCTGAATGAGGATTTGGTTTTCCATCACCTGGTTCTGCAGAAGCATCCTGGTCTTGACGACCATGTGAACTGTTTTGGACGTTCCTCAGACCTGTCAGCTCAGCGAGTTTTTGTTAAAGTCTTCAATAAATCTTTTGGTTTAAAAAGTCCTCTTGCCTAATGTTCTTACTTGATGTTATTAGATTAAAATCAGTGTAAATTAAGATCAAACTAAGGTATTGCAGGAACCAGTAGTCTTCTGCCTTGGTTTGGACTTGCTTCGGCTGCAAACTTTTTGTGTGGGGGGggtgtttttactttaaatcgCTACTAAACTATGATCTCGATTATACCATTCTTTAACAAACTTGAAGGTTACTCCTTGTGCCATGCCTGCTAATTCATCTAATGTGTATAGGATCCAATTAAACTCTCAGCGACTAAGTTTGCGCAAACCAGTGACTAGGCAGCAGTTATTTAACAGGTTGTATAAAGTAATGTAACTACAGTGTAGCAGAGCTCTATTAAGGGCTGGTAATCAACGTGAGTACCTTGAACAAATGAATTTTGTGAGTAACAG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU233302 True 794 lncRNA 0.43 4 14373577 14375050

Neighbor

gene id symbol gene type direction distance location
pa2g4b pa2g4b,LOC107737517,LOC107593906,LOC107591063,LOC107668344,LOC107673109,LOC107716155 coding upstream 1684 14366558 ~ 14371893 (+)
erbb3b LOC107673099,LOC107737518,LOC107668345,LOC107593907,LOC107716154 coding upstream 7381 14345196 ~ 14366196 (+)
fam3a fam3a,LOC107673098,LOC107591069,LOC107737523,LOC107593911 coding upstream 75460 14293872 ~ 14298117 (+)
arhgap4a arhgap4a,LOC107737525,LOC107673101,LOC107591071,LOC107716143,LOC107687450,LOC107593913 coding upstream 115865 14246442 ~ 14257712 (+)
casp9 casp9,LOC107673102,LOC107737696,LOC107687452,LOC107716147,LOC107593914 coding upstream 127873 14240745 ~ 14245704 (+)
esyt1a esyt1a,LOC107737514,LOC107673110,LOC107591117,LOC107716156,LOC107593905,LOC107668346 coding downstream 543 14375593 ~ 14390509 (+)
fmnl3 fmnl3,LOC107673105,LOC107737516,LOC107716159 coding downstream 15765 14390815 ~ 14428183 (+)
LOC122328739 NA coding downstream 78656 14453706 ~ 14455543 (+)
rbms2b rbms2b,LOC107673067,LOC107737513,LOC107668341,LOC107716168,LOC108425569 coding downstream 156403 14531453 ~ 14554130 (+)
r3hdml LOC107673068,LOC107737693,LOC107568404,LOC107716065 coding downstream 197197 14572247 ~ 14580946 (+)
LOC122328961 NA non-coding upstream 99842 14264664 ~ 14273735 (+)
G157531 NA non-coding upstream 176881 14196431 ~ 14196696 (+)
G157521 NA non-coding upstream 225961 14147410 ~ 14147616 (+)
G157494 NA non-coding upstream 285058 14087581 ~ 14088519 (+)
G157496 NA non-coding upstream 286319 14085594 ~ 14087258 (+)
G157608 NA non-coding downstream 189290 14564340 ~ 14566056 (+)
G157609 NA non-coding downstream 191469 14566519 ~ 14566730 (+)
G157610 NA non-coding downstream 192151 14567201 ~ 14568506 (+)
G157611 NA non-coding downstream 194082 14569132 ~ 14569509 (+)
G157624 NA non-coding downstream 252540 14627590 ~ 14629198 (+)
si:dkey-151g10.3 LOC107737519,LOC107716153,LOC107593909,LOC107668334,LOC107673054 other upstream 30303 14299701 ~ 14343274 (+)
c1qtnf12 fam132a,LOC107591142,LOC107716139,LOC107593919,LOC107687484 other upstream 247376 14094078 ~ 14126201 (+)
LOC122328708 LOC107737579,LOC107672049,LOC107565833,LOC107712694,LOC107687392,LOC566587,LOC107593419 other upstream 2121595 12246193 ~ 12251982 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other upstream 2627007 11697414 ~ 11746570 (+)
LOC122328549 smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283 other upstream 2641216 11730980 ~ 11732361 (+)
pkig pkig,LOC107737509,LOC107673080,LOC107574720,LOC107564651 other downstream 228743 14603793 ~ 14636817 (+)
itih6 LOC107737505,LOC107673092,LOC107574689,LOC107695841,LOC107716181,LOC107564649 other downstream 234479 14609529 ~ 15153978 (+)
LOC122328906 LOC107673074,LOC107737500,LOC107695835,LOC107716175,LOC107574686,LOC107564653,LOC107576192 other downstream 305810 14680860 ~ 14686618 (+)
LOC122328914 szrd1,LOC107673108,LOC107716129,LOC107737539,LOC107687433,LOC105899027 other downstream 337097 14712147 ~ 14714555 (+)
LOC122328907 mef2d,LOC107741762,LOC107549240,LOC107717782,LOC107597970,LOC107663114,LOC107689865 other downstream 350860 14725910 ~ 14758217 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_09132867_09145278 PA2G4.L, PA2G4-B, PA2G4B, PA2G4, PA2G4A misc CI01000001 null 9132867 ~ 9145555 (+)