LOC122328906 (LOC107673074,LOC107737500,LOC107695835,LOC107716175,LOC107574686,LOC107564653,LOC107576192)


Basic Information

Item Value
gene id LOC122328906
gene name LOC107673074,LOC107737500,LOC107695835,LOC107716175,LOC107574686,LOC107564653,LOC107576192
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14680860 ~ 14686618 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU233368
AACACCACAGGGGGGCCCTGCATCCTGATGTGGGCAGACACTCTCCTCGCTACTTACTCTGGGAAACAGGTGGATCTGGCAAAGAGACGTTTTTAATAGTTCTTCTGACATCACGGCCGGTTCCGTTTGCAATGGAACGGTGTCAAGacTTGTCCTCAATTTCCAAAATGTTCTGAATCTGCAATCCCTCAGGCTTATCTTCTCTATGCGCAAGATCTTCTTCCCCGTGTCTGCTCGCGACTGGTCGGTGATGGAGCAGGTGGAGCTGGAGTACGACGGGCAGAGAGCCATCTTTAATGCCAGCGGCGGGATCTACTCTCCTGCGGAGTATTCTTTCCACTGCCAGAGCGTGAGCAGCGCTCAGAGCCCCCTGCTGGTGCCTCGAAGCGCTACGGACAACGCTACCCTGTGGACGCTGTCTTTCAATGATTTCCAGATCCAAGGCTTCGGCGTTAGCGGTGAAGACTTCTCGTATGCCAGCGACTGTGCGGGATTCTTCACTCCGGCGATTTGGATGGGCCTGCTGACCTCTCTACTCATGGTGCTCATTCTT
>XM_043224986.1
GTCAGCTCTCTGCCGTTCACGTGACTCTCCCGCAGGAGGACGGAAGTGGGACCGCGGCGTACAAGTCTCTCAGCAATGGCCTTCACCTcgcttttattatttctctgtTCGGTTTACAGCTGCTGTGCTCAAGTGCCTCTGCTCATGTGGACCAGTGATGGGTCCGAAATGCCACATCTGCCTCAAGCAGCAGCTGGTCAGATAGTGTCTGGTGGGCAGCTGGCGTCTTATCTCAAACCTGCCTTGTCCACCGCTCCACACAATGTGCTGCTCTTCCTACAGGATAAGCTAAGTTTGGAAGACTTCACTATGTACGGTGGAGTGTTTGGCAACAAGCGAGACAGTGCCTTTTTGAACGTAGAGTCAGCACTTCAGACGTCCTCCAGCCCCCTGGTGTTGCCAGCCCTGGACTGGTCTGCATCACATTCCGTCCTGGAGCTGTTCCAGGCAGAGCTGGGTGTCCCAGCAGTCCAGATGGACCCCAGCGCCCTGAAGGAAATCAAGCTGAGCACAGCACAGCCTTCCCTGCTGGCCCTCCGTCTCCCTTACATCGCTGAGGATCAGACAAAGGAATTGCTTTTGAAAAATGATGCGATCATTGGAGAGGTCCTCGACATGTTCAAGTCTCAGGATGTGCCTTACACTGCCGTATACACCGGCCTGAAGCCTTCTAGAGTGATTGAGGAGAGCCCAGTGATGGCAGCACAGTCTGTGGGCCGATCTCTGCTCCAGGCCCTGCCGGAGTCTCGTCAAACCCCAGTTGTCGTCAACACCACAGGGGGGCCCTGCATCCTGATGTGGGCAGACACTCTCCTCGCTACTTACTCTGGGAAACAGGTGGATCTGGCAAAGGACGTTTTTAATAGTTCTTCTGACATCACGGCCGGTTCCGTTTGCAATGGAACGGTGTCAAGacTTGTCCTCAATTTCCAAAATGTTCTGAATCTGCAATCCCTCAGGCTTATCTTCTCTATGCGCAAGATCTTCTTCCCCGTGTCTGCTCGCGACTGGTCGGTGATGGAGCAGGTGGAGCTGGAGTACGACGGGCAGAGAGCCATCTTTAATGCCAGCGGCGGGATCTACTCTCCTGCGGAGTATTCTTTCCACTGCCAGAGCGTGAGCAGCGCTCAGAGCCCCCTGCTGGTGCCTCGAAGCGCTACGGACAACGCTACCCTGTGGACGCTGTCTTTCAATGATTTCCAGATCCAAGGCTTCGGCGTTAGCGGTGAAGACTTCTCGTATGCCAGCGACTGTGCGGGATTCTTCACTCCGGCGATTTGGATGGGCCTGCTGACCTCTCTACTCATGGTGCTCATTCTTACCCACGGCCTGCACATGATCATGCACCGCACCATGGACCGCTTTGATGACCCGAAAGGGCCAGCGATTTCAGTGCCTCAGAGTGAGTGACTTCAGCCAAAAACTGTCATGTTgtcaaaaaggtaaaaatacgCTTGATTTGTATGTATGGCAAAACTGATGGTTGGAAATCAGGAATTTATGGATCTAGCTTGactattgaattttttttttcttgagtatGTATGTTCAAAggcaaatcatatttttaaatgtattttgatgtcACGTAGAAGGTGGTGAAATTTTCATCTCTCCTTTTCTACacttgtaattatttaattaacactTTACATTAGGGTTCTATGCAATCAAATGcactaactaaaactaaactattcTTTTGCAGCATTTTTCTTACATAGATGCATATAAGTAGCACTGAATATTAGACATTTTACATCGGTCTACATTAATTAATGCTGCAAAAAGTGTTGAACCTATGCATTtcagtacacatgcatatttctCTATGAATGGAATATTTTTTGACATGTTTTGCATTGGAACATCCTGTTTGGACTACTGTTATTTATCTTCTCCTTATAAATCTGGTGGTTTGCTTCTCATATTTTACTGGATTTGTACATGTTTGTGTAGTTGTAAGTTTAAAGGTTGCCAATATTTAATTATGCCAAATGTACAATTTAAGTGCCTATGGACCAGTCACTGCATGGAGAatgaaaaattctaaattaagtCATTAAAGTTTTTGGTTATTAGACTAATAAAAGTGCCAAAAGTACGTTCACATGTCTTCAATggttaaaatgtttgatttcattTGTGATGCCCCAAAGAATGAATGGTTTAACAAATctgtaattacagtaaaacttgCCATAATTTTGCTGTTGTCTGTACAATTGTTAATTGAAGTCGctgtatatatgttaaaaaaactcATTGGTGCGATATTGTCTGTTCAAAATATACCATGTGCAGTAggattcatgtttttgtttgacatgctttgtaaatgaaatagtcatgaacagtttttttctattgaaataATTGAACAACTAAACTGATTGTTCCTTGTTATGTAATAGAGGAAATGTAACGCGGTGAACTGAACGTGGTTTATTGGAAACCTTGTGATACAGAAAGCAGCTGTACTGGTTGAATATGAAATGCATCTAGTGATAGAGCAAAACCTAATTCCACAATAACACTGTGTGTCAAACAGAATCAGTGCTCAGGTCTGCAAATATCcaagaactaaaataaaatggacaAATGTCAGTTATGAACCCAA

Function

NR:

description
PREDICTED: V-type proton ATPase subunit S1-like

GO:

id name namespace
GO:0003406 retinal pigment epithelium development biological_process
GO:0032438 melanosome organization biological_process
GO:0008057 eye pigment granule organization biological_process
GO:0033180 proton-transporting V-type ATPase, V1 domain cellular_component
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU233368 False 553 TUCP 0.54 4 14683990 14685316
XM_043224986.1 True 2620 mRNA 0.44 13 14680860 14686618

Neighbor

gene id symbol gene type direction distance location
pfkfb1 pfkfb1,LOC107673088,LOC107737504,LOC107716165,LOC107574688,LOC107564646,LOC107695839 coding upstream 20928 14649780 ~ 14659932 (+)
si:dkey-78k11.9 LOC107737691,LOC107564648,LOC107574687,LOC107695840,LOC107716176 coding upstream 31628 14647107 ~ 14649232 (+)
ccn5 wisp2,LOC107564647,LOC107716172,LOC107695740,LOC107574719,LOC107574685 coding upstream 33898 14642391 ~ 14646962 (+)
ttpal ttpal,LOC107673079,LOC107568409,LOC107716173,LOC107695756,LOC107564663 coding upstream 77207 14600155 ~ 14603653 (+)
hnf4a hnf4a,LOC107673078,LOC107737506,LOC107568408,LOC107564652 coding upstream 82525 14581032 ~ 14598335 (+)
LOC122328909 LOC107715611,LOC107563070,LOC107690380,LOC107715213,LOC107693040,LOC107564380 coding downstream 72772 14759390 ~ 14770326 (+)
LOC122328910 aagab,LOC107596965,LOC107686304,LOC107738712,LOC107718310,LOC107672261,LOC107583761 coding downstream 387398 15074016 ~ 15077510 (+)
LOC122328905 LOC107673074,LOC107737500,LOC107695835,LOC107716175,LOC107574686 coding downstream 473132 15159750 ~ 15165538 (+)
ptpn22 LOC107737496,LOC107668554,LOC107570169,LOC107716160,LOC107695833,LOC107564640 coding downstream 637726 15324344 ~ 15338267 (+)
si:ch73-206d17.1 LOC107726152,LOC107571682,LOC107695830,LOC107568454 coding downstream 789105 15475723 ~ 15478611 (+)
G157626 NA non-coding upstream 44739 14631840 ~ 14636121 (+)
G157624 NA non-coding upstream 51662 14627590 ~ 14629198 (+)
G157611 NA non-coding upstream 111351 14569132 ~ 14569509 (+)
G157610 NA non-coding upstream 112354 14567201 ~ 14568506 (+)
G157609 NA non-coding upstream 114130 14566519 ~ 14566730 (+)
G157633 NA non-coding downstream 13322 14699940 ~ 15309487 (+)
G157634 NA non-coding downstream 15825 14702443 ~ 14702869 (+)
G157640 NA non-coding downstream 33316 14719934 ~ 14721485 (+)
G157673 NA non-coding downstream 495517 15182135 ~ 15311694 (+)
G157676 LOC107668555,LOC107737499,LOC107570136,LOC107716162,LOC107695834,LOC107564641 non-coding downstream 526709 15213327 ~ 15341005 (+)
pkig pkig,LOC107737509,LOC107673080,LOC107574720,LOC107564651 other upstream 44043 14603793 ~ 14636817 (+)
si:dkey-151g10.3 LOC107737519,LOC107716153,LOC107593909,LOC107668334,LOC107673054 other upstream 337586 14299701 ~ 14343274 (+)
c1qtnf12 fam132a,LOC107591142,LOC107716139,LOC107593919,LOC107687484 other upstream 554659 14094078 ~ 14126201 (+)
LOC122328708 LOC107737579,LOC107672049,LOC107565833,LOC107712694,LOC107687392,LOC566587,LOC107593419 other upstream 2428878 12246193 ~ 12251982 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other upstream 2934290 11697414 ~ 11746570 (+)
LOC122328914 szrd1,LOC107673108,LOC107716129,LOC107737539,LOC107687433,LOC105899027 other downstream 25529 14712147 ~ 14714555 (+)
LOC122328907 mef2d,LOC107741762,LOC107549240,LOC107717782,LOC107597970,LOC107663114,LOC107689865 other downstream 39292 14725910 ~ 14758217 (+)
G157656 megf11,LOC107583869,LOC107672222,LOC107596974,LOC107686294 other downstream 305732 14992350 ~ 14996145 (+)
G157620 NA other downstream 614086 15300704 ~ 15304550 (+)
G158152 rps26,RPS26,rps26l,LOC107563646 other downstream 1297052 15983670 ~ 16083529 (+)

Expression


Co-expression Network