LOC122328907 (mef2d,LOC107741762,LOC107549240,LOC107717782,LOC107597970,LOC107663114,LOC107689865)


Basic Information

Item Value
gene id LOC122328907
gene name mef2d,LOC107741762,LOC107549240,LOC107717782,LOC107597970,LOC107663114,LOC107689865
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14725910 ~ 14758217 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU233447
AAGAAAGGCTTTAACGGTTGCAACAGTCCAGAGCCAGACGGGGACGATTCAATCGACCAAAGTCCGTTACAGGAGGATAAATACCGCAAGAGCGAGGAGCTGGACATCCTCTTCAAACGCTACGGATCCACAGTGCCACCGCCCACTTTCTCCATGCCAGTCACAGTGCCGGTGTCCAGTCAGAGCCCTCTGCCATTCAGCAATCCCAGCAGCCTCGTCACCACTTCCTTCGTCACCTCCACTCTCACAGACCCGCGCCTGCTGTCACCACAGCAACCGCAGCTGCAGAGGAACACGGTGTCTCCAGGCCTGCCACAGAGACCTGCCAGCGCAGGTGCTCTTTTGGGAGGTGACCTCAACAATTCAAACGGAGCGTGCCCAAGCCCTGTGGCCAATGGTTACGTCAGTGCCAGGGCCTCCCCAGGACTACTCTCAGTCTCCAACGGCAGCATGGTAAAAGTAGTGACGGCTAAACCTCCCTCTCCATCCAGCCCTCAGATGGTGAACAGTCGTAAACCGGACCTTCGGGTCATCACTTCACAGAGCAGCAAGGGTCTCATGCAACTGACAGATGAAGAGCTGGAGTTGGTGAGTGAGAACGCTCAGCGGTTAGGCGCCTCTCAAGTGACCCAGCCTCTTACCACACCAGTGGTTTCCGTGGCAACGCCGAGCCTCCTGACTCCATTCTCCATGCCAACCGCCTACAACACAGAGTACCAGCTAACAAGTGCAGATCTCACAGCCCTCCAGGCCTTCACGCCGTCGGGTGCACTGTTGCCAAGCAACATGACCACTtggcaacagcagcagcagccatcTGTATCCCAACAACCACAGCAGCAGCCATCCGTATCCCAGCAACAGCctcagcagcagcaacaacagcagcagcaaccaCAGCAGCTAACTCTGGCCTCCCTCAGTAATCT
>XM_043224987.1
CTCCCGTAACTGCCTCGAGAAattctgacctctgacctcaccACCCCCAACCTTGCCCCCACCCCTGCTCGGCCAATCACAGCAGCCATGGGGAGGAAAAAGATCCAGATTCAACGAATCACAGATGAGCGTAACAGACAGGTGACCTTCACCAAACGGAAGTTTGGTCTGATGAAGAAAGCTTATGAGCTCAGTGTGTTGTGTGACTGCGAGATTGCCCTCATTATTTTCAATCACTCAAACAAGCTCTTCCAGTATGCCAGCACCGACATGGACAAAGTGCTCCTCAAATACACCGAGTACAATGAGCCGCACGAAAGCAGGACCAACGCAGACATCATCGAGacgttgAGAAAGAAAGGCTTTAACGGTTGCAACAGTCCAGAGCCAGACGGGGACGATTCAATCGACCAAAGTCCGTTACAGGAGGATAAATACCGCAAGAGCGAGGAGCTGGACATCCTCTTCAAACGCTACGGATCCACAGTGCCACCGCCCACTTTCTCCATGCCAGTCACAGTGCCGGTGTCCAGTCAGAGCCCTCTGCCATTCAGCAATCCCAGCAGCCTCGTCACCACTTCCTTCGTCACCTCCACTCTCACAGACCCGCGCCTGCTGTCACCACAGCAACCGCAGCTGCAGAGGAACACGGTGTCTCCAGGCCTGCCACAGAGACCTGCCAGCGCAGGTGCTCTTTTGGGAGGTGACCTCAACAATTCAAACGGAGCGTGCCCAAGCCCTGTGGCCAATGGTTACGTCAGTGCCAGGGCCTCCCCAGGACTACTCTCAGTCTCCAACGGCAGCATGGTAAAAGTAGTGACGGCTAAACCTCCCTCTCCATCCAGCCCTCAGATGGTGAACAGTCGTAAACCGGACCTTCGGGTCATCACTTCACAGAGCAGCAAGGGTCTCATGCAACTGACAGATGAAGAGCTGGAGTTGGTGAGTGAGAACGCTCAGCGGTTAGGCGCCTCTCAAGTGACCCAGCCTCTTACCACACCAGTGGTTTCCGTGGCAACGCCGAGCCTCCTGACTCCATTCTCCATGCCAACCGCCTACAACACAGAGTACCAGCTAACAAGTGCAGATCTCACAGCCCTCCAGGCCTTCACGCCGTCGGGTGCACTGTTGCCAAGCAACATGACCACTtggcaacagcagcagcagccatcTGTATCCCAACAACCACAGCAGCAGCCATCCGTATCCCAGCAACAGCctcagcagcagcaacaacagcagcagcaaccaCAGCAGCTAACTCTGGCCTCCCTCAGTAATCTTGTGTACGTCATATGCCTTTTACAGACTCTAGGTCTCTTGCTCGCACCTACTCACACATGCACCTGGCTCTTCACTAACCACATGTCCATAGTGTGAGCCCGCATGCACCACATCTACTTCCTGTCTACAGTGTAGAGATGAGTGTTGCGCTGATATACGC
>XM_043224988.1
CTCCCGTAACTGCCTCGAGAAattctgacctctgacctcaccACCCCCAACCTTGCCCCCACCCCTGCTCGGCCAATCACAGCAGCCATGGGGAGGAAAAAGATCCAGATTCAACGAATCACAGATGAGCGTAACAGACAGGTGACCTTCACCAAACGGAAGTTTGGTCTGATGAAGAAAGCTTATGAGCTCAGTGTGTTGTGTGACTGCGAGATTGCCCTCATTATTTTCAATCACTCAAACAAGCTCTTCCAGTATGCCAGCACCGACATGGACAAAGTGCTCCTCAAATACACCGAGTACAATGAGCCGCACGAAAGCAGGACCAACGCAGACATCATCGAGacgttgAGAAAGAAAGGCTTTAACGGTTGCAACAGTCCAGAGCCAGACGGGGACGATTCAATCGACCAAAGTCCGTTACAGGAGGATAAATACCGCAAGAGCGAGGAGCTGGACATCCTCTTCAAACGCTACGGATCCACAGTGCCACCGCCCACTTTCTCCATGCCAGTCACAGTGCCGGTGTCCAGTCAGAGCCCTCTGCCATTCAGCAATCCCAGCAGCCTCGTCACCACTTCCTTCGTCACCTCCACTCTCACAGACCCGCGCCTGCTGTCACCACAGCAACCGCAGCTGCAGAGGAACACGGTGTCTCCAGGCCTGCCACAGAGACCTGCCAGCGCAGGTGCTCTTTTGGGAGGTGACCTCAACAATTCAAACGGAGCGTGCCCAAGCCCTGTGGCCAATGGTTACGTCAGTGCCAGGGCCTCCCCAGGACTACTCTCAGTCTCCAACGGCAGCATGGTAAAAGTAGTGACGGCTAAACCTCCCTCTCCATCCAGCCCTCAGATGGTGAACAGTCGTAAACCGGACCTTCGGGTCATCACTTCACAGAGCAGCAAGGGTCTCATGCAACTGAACGCTCAGCGGTTAGGCGCCTCTCAAGTGACCCAGCCTCTTACCACACCAGTGGTTTCCGTGGCAACGCCGAGCCTCCTGACTCCATTCTCCATGCCAACCGCCTACAACACAGAGTACCAGCTAACAAGTGCAGATCTCACAGCCCTCCAGGCCTTCACGCCGTCGGGTGCACTGTTGCCAAGCAACATGACCACTtggcaacagcagcagcagccatcTGTATCCCAACAACCACAGCAGCAGCCATCCGTATCCCAGCAACAGCctcagcagcagcaacaacagcagcagcaaccaCAGCAGCTAACTCTGGCCTCCCTCAGTAATCTTGTGTACGTCATATGCCTTTTACAGACTCTAGGTCTCTTGCTCGCACCTACTCACACATGCACCTGGCTCTTCACTAACCACATGTCCATAGTGTGAGCCCGCATGCACCAC
>XM_043224989.1
CTCCCGTAACTGCCTCGAGAAattctgacctctgacctcaccACCCCCAACCTTGCCCCCACCCCTGCTCGGCCAATCACAGCAGCCATGGGGAGGAAAAAGATCCAGATTCAACGAATCACAGATGAGCGTAACAGACAGGTGACCTTCACCAAACGGAAGTTTGGTCTGATGAAGAAAGCTTATGAGCTCAGTGTGTTGTGTGACTGCGAGATTGCCCTCATTATTTTCAATCACTCAAACAAGCTCTTCCAGTATGCCAGCACCGACATGGACAAAGTGCTCCTCAAATACACCGAGTACAATGAGCCGCACGAAAGCAGGACCAACGCAGACATCATCGAGacgttgAGAAAGAAAGGCTTTAACGGTTGCAACAGTCCAGAGCCAGACGGGGACGATTCAATCGACCAAAGTCCGTTACAGGAGGATAAATACCGCAAGAGCGAGGAGCTGGACATCCTCTTCAAACGCTACGGATCCACAGTGCCACCGCCCACTTTCTCCATGCCAGTCACAGTGCCGGTGTCCAGTCAGAGCCCTCTGCCATTCAGCAATCCCAGCAGCCTCGTCACCACTTCCTTCGTCACCTCCACTCTCACAGACCCGCGCCTGCTGTCACCACAGCAACCGCAGCTGCAGAGGAACACGGTGTCTCCAGGCCTGCCACAGAGACCTGCCAGCGCAGGTGCTCTTTTGGGAGGTGACCTCAACAATTCAAACGGAGCGTGCCCAAGCCCTGTGGCCAATGGTTACGTCAGTGCCAGGGCCTCCCCAGGACTACTCTCAGTCTCCAACGGCAGCATGGTAAAAGTAGTGACGGCTAAACCTCCCTCTCCATCCAGCCCTCAGATGGTGAACAGTCGTAAACCGGACCTTCGGGTCATCACTTCACAGAGCAGCAAGGGTCTCATGCAACTGAACACCCAGAGGATAAGCAGTTCCCAGTCGACCCAGCCTTTGGCCACACCGGTGGTCTCTGTCACCACCCCAAGTCTGCCACCACAAGGCCTGGTCTACTCAGGCATGCCCACTGCCTACAACTCTGAATACTCCCTGAGCAGTGCTGAGCTCTCCTCTCTGCAAGGCTTTGGCTCTCCAGGGCTCTCTATAGGCTCAATGTCGGCATGGCAACAGCATCAACTGGGCCAGGCAGCTCTCAGCTCGCTGGTAGGTGGCGGTCACTTACCTCAGGGCTCAAATCTCTCCATCAACACCAGCCAGAATGTCAACATTAAATCCGAGCCCATCTCTCCTCCACGCGAGCGCATCACCCCGTCCGGCTTCCCgccccagcagcagcagcagcctccCTCCGGCCGTCCCGACATGGGCCGCTCGCCCGTGGACAGCCTcagctcctcctgctcctcctatGATGGAAGCGACCGAGAGGATCACCGGCCCGATTTCCACTCCCCGCTCGGCCTGGGTCGGCCCCCAGCCGCCGGGGCCGAAGAGAGGGAGAGCCCCACGGTCAAGCGCATGCGCATGGACACCTGGGTGACATAAAGCTGTCCCGAGCCTGACAGCCAGTCAGTCACAAGCAGGGCTGGGCAGGGGGAAAGGGAGAGAGGAGCGACAGCAGGGAGggtcattattgttattattctattgttataatttaacgtcatttcacttttttgtaaGTAGGTAGATGGGGAAAGAAATCGAAAATGTCCTGACATATCGAAATTCAGCAGAtgagtggagagagagagagagaacctcAAGTCAAGCAGTCAGAATGAACGGTGTACTCAAACAAACAGGTGTTATCAGGTACTTGATGCAAATTTCATTGCGTGAGAGTCCAATGtatgaagaaaacattttcGATTGTTGTCGTCACTGGTGCAGTTTGACACTCGTAGCTGTTTTTGCTGTTGATTTTGCAAACAATCAAAGAAAGTTTAGGGGCGGCTTTCTGTCCGAAGGCTTCTGCCTGCTGGGCTCATGTATTAAACAATCTATATCTGCACTCGCCCTTTTATGAAGTATGTcacttattaatttatttaaaggtaTTCGATGATAGATTTGGATCGGTTTTAAGGCTTGTATCTAAAATGAGATCACATTTCACCTCAGTTAAGACATTaagcaaagaaatgaaaaatgtctctaaattaatatcaatatcaattTTCAGTCCCTTCTTAACAGCAGTTTTAACAAATGGGAAAAGAACAGGTAGCCCAGTCGATTTAGAGACGATAGCAAGTCATTGTACATTCATGCAGCTCCAACAACTCAATGGTAACGCAAGCCAAAGCCTCTATGTAATTTTGTCGTACTGTAGGTTGggaattttcagcatttctctctcgatgtttgttttatattagttCTGTCATAGTGTGCGTTGTTACAAACATTGGAAAACGATTAACATGCAAAGCAGATCTTGAAACGATATCTAAAGCCATGAACACTTGCTGTTCTGTTTGTAAATTAAAGATTTGagccaaaccttttttttttcttttgttttgtacatagcaactttaatatatatCACTTTTGGTGTAAGTACGTATGTATTGTACCTTCACCAGATTCaagaaaaaagtatatttttgtggattacTGCCAAGTTTACAAGGCGAGATCCTTATTAAGTAGAGTATTCACTGgttaatatttactattttgttAACTATACTGTACTTTCTTCAAATCTGACTATTATTGGTAATATtcgaagtgttttttttttctccaagaaGATAGTTTTTGGGTCGTTTACCCTTTAATGGTGGTGAATGTCTGTCCATAAGAAATTGTAACGACAGAGCTGTATGATTCAAGCTCAGCTGTCTTTATTTCGTTTTGTAAAACGATACTCGTCatgctaagaaaaaaaatatatatatggttgCATTTCTTACAACTGTTTTGTGAGGGATTAGCCTGCAGCTGCTGAATACACTGCCTACTTTAACCCATCACGGCTTAGATGCACTATTCATTGAGATCCAGTTCAAGACACATTTCTCTTTACAAACATTCCCCAAagtttgtagaaaaaaaaagctcatgtTGCTAAATTCATTTCAACCAAATCCCTCATATATTGTAAATACCATGACTTTAGGTAACCCtgatacacacatgcatactaTGTACAGAACACCTTTCCTGTTATTTTGAGAATTGGCTCATCTGCAGATTTCCTAATGTAAAGAAGACACCTTAAGGAGGCATCGGTCGCAATGTTCTGTATTGCTGGACGAGAGAGGGCGCTGTAGCTCTCTCCGCCGTCGCGTTTCGCTCTCTGTGTGCATATCTCTTCACGTGTGGCTGTTTGTTTGTGCGGCACGAACGTCCGGTAGAAGTGGCCTCCGGCTTGCATCACACCTCACTGCCCCTCGGGTGGCAAAGCGTCAGGGGATTCAGCAGCTAAAGATGGAAATACTAGACAATGCAAACTGACTTGGACATGATCTCTCTAATGGATTGCACAAAAAGTTTGTATGTTCAAGCTTGCCGTCGGATGCTTTCCTCTTTAGATTTGTTATGTATTCGGTCGGTGTGCGCATACCTTCCTGCCCTCTCGAGCACCGCAGCAACTGGCAATAAGCTGATATTAATCTATGCAGTCCCCAACCCACACATAGCCAGGAACACAAAGcattcacatttaaaagtggagttttaaagggatagctcacccagaTATGACGATTCGGTTATTGGCTCGCCCtaaagttgttccaaacctgcatgactttctttcttctgctgaacgtGAGACGGTTCGAAGAAGGTCACCatactgtttgttttaaaaatcaataggGCCCATCAGCTGTGACCCACATCCTTCAAAagtttaacagaagaaagaaatccCAACCGGTTTAGAATaacttgagagtgagtaaatgatgtttttttttcatttgagggGTGAACCATTCTTTTacgaatattattaaaaataaattttgagaaagaaaatcatgcatattatattatcacATGTCCATTAATTACACAATGTTGCCTAGTTCATGAATAAAGTGCTCTTTATAGAGCAGGTGAGAAAATGACTGTTAACCCTTTGTCCTTAAGTGcttgcatattaaaaaatacagttcaccaaaaaatgaaaattctgtcattatttactcggCGGTTCCAAagttgcatttcatttttggaacACGAGATGTTTTTACAATTCTAGCTGCAATTACCGTTGATATTCACTAAATGCAACATTCGTCCCAACCGGTTTTCGAACGAGatgacagaattctcatttttttttcccatggtTACGTACAAAGGCACGCTGACTAAAAATGAAATCCACAAGAGCCATGCAAACTCTGCTTTAGGTATAGCTTTAGATTTATCCTCAGACGTGTACAAGCTTTGTTGTCTCAGCTGAACCGAAACGCCCATTAGAAAGTTTTACCATGTCTGTCGAATCATTTGAAGTTGATCACAATCAAAGCTTTTCAGGGTAGACAAGCAATAATGCCAGCCCGGTGTTACGAAAGCACCACGGCCTAAAACACATGCAGGATTTTCAAACTGCAatgaatgcacacacaaacactcaacaTTAGTGCTTGATTAGGAATCAGGGAGTTTCTCTGCTACATGCACAATTAGAGCCTTATTCCAAAGAGTTGCTGGTGTTCGGAATCAAATATGATATCACTCATCGCATTTTGACTTCATCGAAACAAAATCACCCTCACGTCAGGGGTTCTTATAAACGCACGTGAGATATACATAAGAGATCTGAAGAGAGGAGGCTGTTCCTTTGGCGCGGAGTGCTGTGTCACAAACTGTTGAATGTGAAAGGAAGGGATAAAGAGGAAACAACAA

Function

symbol description
mef2d Enables transcription cis-regulatory region binding activity. Acts upstream of or within heart formation; positive regulation of transcription by RNA polymerase II; and skeletal muscle myosin thick filament assembly. Predicted to be located in nucleus. Is expressed in several structures, including adaxial cell; brain; fast muscle myoblast; musculature system; and primitive olfactory epithelium. Orthologous to human MEF2D (myocyte enhancer factor 2D).

NR:

description
PREDICTED: myocyte-specific enhancer factor 2D-like isoform X12

GO:

id name namespace
GO:0060914 heart formation biological_process
GO:0030241 skeletal muscle myosin thick filament assembly biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09262 MEF2D; MADS-box transcription enhancer factor 2D

RNA

RNA id representative length rna type GC content exon number start site end site
TU233447 False 929 TUCP 0.57 7 14736001 14749402
XM_043224987.1 False 1444 mRNA 0.54 9 14725910 14749563
XM_043224988.1 False 1365 mRNA 0.55 8 14725910 14749514
XM_043224989.1 True 4845 mRNA 0.45 9 14725910 14758217

Neighbor

gene id symbol gene type direction distance location
pfkfb1 pfkfb1,LOC107673088,LOC107737504,LOC107716165,LOC107574688,LOC107564646,LOC107695839 coding upstream 65978 14649780 ~ 14659932 (+)
si:dkey-78k11.9 LOC107737691,LOC107564648,LOC107574687,LOC107695840,LOC107716176 coding upstream 76678 14647107 ~ 14649232 (+)
ccn5 wisp2,LOC107564647,LOC107716172,LOC107695740,LOC107574719,LOC107574685 coding upstream 78948 14642391 ~ 14646962 (+)
ttpal ttpal,LOC107673079,LOC107568409,LOC107716173,LOC107695756,LOC107564663 coding upstream 122257 14600155 ~ 14603653 (+)
hnf4a hnf4a,LOC107673078,LOC107737506,LOC107568408,LOC107564652 coding upstream 127575 14581032 ~ 14598335 (+)
LOC122328909 LOC107715611,LOC107563070,LOC107690380,LOC107715213,LOC107693040,LOC107564380 coding downstream 1173 14759390 ~ 14770326 (+)
LOC122328910 aagab,LOC107596965,LOC107686304,LOC107738712,LOC107718310,LOC107672261,LOC107583761 coding downstream 315799 15074016 ~ 15077510 (+)
LOC122328905 LOC107673074,LOC107737500,LOC107695835,LOC107716175,LOC107574686 coding downstream 401533 15159750 ~ 15165538 (+)
ptpn22 LOC107737496,LOC107668554,LOC107570169,LOC107716160,LOC107695833,LOC107564640 coding downstream 566127 15324344 ~ 15338267 (+)
si:ch73-206d17.1 LOC107726152,LOC107571682,LOC107695830,LOC107568454 coding downstream 717506 15475723 ~ 15478611 (+)
G157640 NA non-coding upstream 4425 14719934 ~ 14721485 (+)
G157634 NA non-coding upstream 23041 14702443 ~ 14702869 (+)
G157626 NA non-coding upstream 89789 14631840 ~ 14636121 (+)
G157624 NA non-coding upstream 96712 14627590 ~ 14629198 (+)
G157611 NA non-coding upstream 156401 14569132 ~ 14569509 (+)
G157673 NA non-coding downstream 423918 15182135 ~ 15311694 (+)
G157676 LOC107668555,LOC107737499,LOC107570136,LOC107716162,LOC107695834,LOC107564641 non-coding downstream 455110 15213327 ~ 15341005 (+)
G157704 LOC107570193,LOC107668567,LOC107695831,LOC107568457 non-coding downstream 720826 15479043 ~ 15482462 (+)
G157705 NA non-coding downstream 724455 15482672 ~ 15486980 (+)
G157728 LOC107745451,LOC107716070 non-coding downstream 782576 15540793 ~ 15543928 (+)
LOC122328914 szrd1,LOC107673108,LOC107716129,LOC107737539,LOC107687433,LOC105899027 other upstream 11355 14712147 ~ 14714555 (+)
LOC122328906 LOC107673074,LOC107737500,LOC107695835,LOC107716175,LOC107574686,LOC107564653,LOC107576192 other upstream 39292 14680860 ~ 14686618 (+)
pkig pkig,LOC107737509,LOC107673080,LOC107574720,LOC107564651 other upstream 89093 14603793 ~ 14636817 (+)
si:dkey-151g10.3 LOC107737519,LOC107716153,LOC107593909,LOC107668334,LOC107673054 other upstream 382636 14299701 ~ 14343274 (+)
c1qtnf12 fam132a,LOC107591142,LOC107716139,LOC107593919,LOC107687484 other upstream 599709 14094078 ~ 14126201 (+)
G157656 megf11,LOC107583869,LOC107672222,LOC107596974,LOC107686294 other downstream 234133 14992350 ~ 14996145 (+)
G157620 NA other downstream 542487 15300704 ~ 15304550 (+)
G158152 rps26,RPS26,rps26l,LOC107563646 other downstream 1225453 15983670 ~ 16083529 (+)
G158162 dnajc22,LOC107708801,LOC107716089,LOC107563648,LOC107571715,LOC107695753 other downstream 1263982 16022199 ~ 16023394 (+)
LOC122328571 kmt2d,LOC107681934,LOC107716211,LOC107695802,LOC107563643 other downstream 1823753 16581970 ~ 16607408 (+)

Expression


Co-expression Network