G157999 (itga8,LOC107689880,LOC107717802,LOC107681583)


Basic Information

Item Value
gene id G157999
gene name itga8,LOC107689880,LOC107717802,LOC107681583
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14836361 ~ 14845678 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU234007
TTGTCGGTTGGTTTACGGTTTTCTGTACAGCGGCTGGAAGATGCCCCTCCTACCATTGGCTTTGAGCTTCAGATACAGAGCTCTAACAAGGACAACTCGAGAAGCATTCCAGTGAATTTGACTCTGAGCATTGCAGCAAAAGCACAGGTGGAGATCAGAGGtgtGTCTCACCCAGCTCAGGTTGTTTTGCCTTTCCCTCGATGGGAACCCAAAGAGAAACCTGTGAGAGAGGATGACATCGGCCCTCAGGTTCAACACATATATGAGTTACATAATAAGGGTCCGAGTTCAATAAGCAAGACTGTATTGGAGGTGGGCTGGCCCAGTCGGTACAGAGAGGAGCACCTCCTTTATGCCCTTCAGATCATCACTGATGGACCCGTTCAATGCAGTGTCAACGGCTCCCTAAACCCACTGAAGTTGGAGACCTCTACTCTTCAGGACACTCCAGAATTACTGGGCTTTCTGAGGAACAGCAGCGCTCCGACTCGCCATAGACGATCTGTTTCTACAGCCCAGAGTTACAACAGCAAGATACTGaACTGTTCGAATATCAACTGTCTGATGGTGGAGTGTGTTGTGGATCGATTGGATCGAGGGCAGAGCGCGGTGGTCAAGTTCAGATCTCGACTCTGGGCTCACACCTTTTTACAGAGACGGAATGACCACTACACGCTAAACTCCACAGTGTCCTTTCAAGTGATGGCCATGCCTTATCGGATCAAAGCTCATTCACTCCCACACCAGAGAAAATCAATTGGCACATTTGTGGTGTGGGCCATTCCTGACGTTTCTTTTGCCATCCCCTGTGGGTAATAATTCTGGCTATACTGCTGGGACTGCTGGTGCTGGCCATGCTTAGCCTAGCAATGTGGAAGGTAGGTTgacttaacacacacacacacagtct

Function

symbol description
itga8 Acts upstream of or within cilium assembly and embryonic viscerocranium morphogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Is expressed in hair cell; head; inner ear; neuromast hair cell; and pharyngeal arch. Human ortholog(s) of this gene implicated in end stage renal disease; ovarian cancer; renal agenesis; and schizophrenia. Orthologous to human ITGA8 (integrin subunit alpha 8).

NR:

description
PREDICTED: integrin alpha-8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU234007 True 910 lncRNA 0.49 8 14836361 14845678

Neighbor

gene id symbol gene type direction distance location
LOC122328919 kcnn3,LOC107723559,LOC107657645,LOC107699550,LOC107714686,LOC107595057,LOC108280396 coding downstream 27584 14772091 ~ 14808777 (-)
LOC122329128 LOC107737536,LOC107673093,LOC107716130,LOC107591120,LOC107687434 coding downstream 112136 14717745 ~ 14724225 (-)
gdi1 gdi1,LOC107564645,LOC107737502,LOC107673075,LOC107716167,LOC107574690 coding downstream 157130 14672277 ~ 14679231 (-)
ada ada,LOC107574722,LOC107737507,LOC107673052,LOC107716171,LOC107564650,LOC107695842 coding downstream 200036 14624253 ~ 14636325 (-)
LOC122328465 LOC107737694,LOC107673066,LOC107568406,LOC107668342,LOC107564659,LOC107716177 coding downstream 266703 14564464 ~ 14569658 (-)
LOC122328901 LOC107549209,LOC107689901,LOC107738870,LOC107681562 coding upstream 60158 14905836 ~ 14933006 (-)
LOC122328916 iqch coding upstream 203688 15049366 ~ 15073882 (-)
LOC122328908 smad3b,LOC107686302,LOC107738715,LOC107583760,LOC107672260 coding upstream 232908 15078586 ~ 15092247 (-)
LOC122328567 LOC107668556,LOC107570149 coding upstream 349439 15195117 ~ 15197461 (-)
LOC122328911 LOC107570149,LOC107668556 coding upstream 471049 15316727 ~ 15324022 (-)
LOC122328920 NA non-coding downstream 5512 14830264 ~ 14830849 (-)
G157966 mef2d non-coding downstream 106699 14651424 ~ 14729662 (-)
G157906 NA non-coding downstream 375344 14326384 ~ 14461017 (-)
LOC122328921 NA non-coding upstream 342470 15188148 ~ 15189638 (-)
G158014 NA non-coding upstream 356688 15202366 ~ 15203950 (-)
G157984 NA non-coding upstream 364550 15210228 ~ 15338843 (-)
G158019 NA non-coding upstream 450210 15295888 ~ 15296636 (-)
G158024 si:ch73-206d17.1,LOC107571682,LOC107726152,LOC107695830 non-coding upstream 630809 15476487 ~ 15477769 (-)
fitm2 LOC107673062,LOC107737511,LOC107568407,LOC107564660,LOC107716178,LOC107668335 other downstream 246739 14570347 ~ 14589622 (-)
G157909 LOC107673054,LOC107737519,LOC107716153,LOC107591065 other downstream 505577 14326966 ~ 14330784 (-)
zbtb48 LOC107673103,LOC107716144,LOC107591072,LOC107687447,LOC107737528 other downstream 603310 14222809 ~ 14233051 (-)
G157373 LOC107591099,LOC107703059,LOC107737560 other downstream 1554034 13280256 ~ 13282327 (-)
G157367 NA other downstream 1618953 13141078 ~ 13217408 (-)
LOC122328913 zgc:162898,c4h15orf61,LOC107738714,LOC107686305,LOC107583911,LOC107718314,LOC107596966,LOC107672207 other upstream 201474 15047152 ~ 15048344 (-)
magi3a magi3,magi3a,LOC107695739,LOC107564661 other upstream 501739 15347417 ~ 15474390 (-)
LOC122329227 NA other upstream 776264 15621942 ~ 15717250 (-)
G158231 NA other upstream 1162428 16008106 ~ 16008915 (-)
G158288 LOC107708856,LOC107570569,LOC107716212,LOC107681953,LOC107695729 other upstream 1298155 16143833 ~ 16169834 (-)

Expression


Co-expression Network