G158152 (rps26,RPS26,rps26l,LOC107563646)


Basic Information

Item Value
gene id G158152
gene name rps26,RPS26,rps26l,LOC107563646
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15983670 ~ 16083529 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU234236
TGACGTAAGCGCTTTTCCGGTCCTCTCTCATGCCTCTCTGAATCAAGATGACCAAGAAGAGGAGGAACAACGGTCGTGCCAAGAAGGGACGTGGACATGTCCAGCCCATCCGCTGCACAAACTGTGCCCGGTGTGTCCCTAAGGACAAAGCCATCAAGAAGTTTGTCATCAGAAATATTGTGGAGGCTGCAGCTGTAAGGGACATCTCCGAAGCCAGTGTGTTTGACTCCTACGTTTTGCCCAAACTGTATGTGAAACTGCACTACTGCGTCAGCTGTGCCATCCACAGTAAAGTGGTGAGAAACCGCTCTCGTGAGGCCAGGAAGGACCGGACCCCTCCGCCGCGCTTCAGGCCCACTggTGGTGCCCCAAGAGCCCCTCCAAAACCAATGTAATCTGGAGATATTTTCGTACATTATGTAAGGAAATAAAGCAGACTAAAATAAGTGCATTCTTTTTGTCTgttcatacaaaaataaaaaatgttgctcTTGTGTACCTGAAGTTTGGTAGtgttctgagaaaaaaaaaaaaaaaaatcaaactgcTTAATTTTCC
>TU234237
TGAAGGATGTCGCTTTTCCGGTCCTCTCTCATGCCTCTCTGAATCAAGATGACCAAGAAGAGGAGGAACAACGGTCGTGCCAAGAAGGGACGTGGACATGTCCAGCCCATCCGCTGCACAAACTGTGCCCGGTGTGTCCCTAAGGACAAAGCCATCAAGAAGTTTGTCATCAGAAATATTGTGGAGGCTGCAGCTGTAAGGGACATCTCCGAAGCCAGTGTGTTTGACTCCTACGTTTTGCCCAAACTGTATGTGAAACTGCACTACTGCGTCAGCTGTGCCATCCACAGTAAAGTGGTGAGAAACCGCTCTCGTGAGGCCAGGAAGGACCGGACCCCTCCGCCGCGCTTCAGGCCCACTggTGGTGCCCCAAGAGCCCCTCCAAAACCAATGTAATCTGGAGATATTTTCGTACATTATGTAAGGAAATAAAGCAGACTAAAATAAGTGCATTCTTTTTGTCTgttcatacaaaaataaaaaatgttgctcTTGTttaaaaaaaacaaaaaaccaaaaaaacagttGAATTTCAAAGAAGGGAGTTGAACAAAGTCTCCACATAGCCCATGCTACTTTGTTCCTTTCTCCCCTGACTTATGACCTCACGTTaagaataaatgcaaaatgtataaaCTGTACATAGTAGGGGTCTAAACTCTTTATCCAGCCCCTTTtacatcaaattcaaaattgTAGAGAAATAAAATTCATGAAAAAAGCAACCACTGGATATCATTTTATCAGAAAActaaatgtgtatatatctataaatatatgtaaaatggcAAACTAAGTAATATCTTTATGTATATGAACAAgagtgtttttgcatttaactttttttttttttttttttctatctgcGTTTTTCCTACAAGACCATATACAGTTTAACTAAAAAAGGTGTGATGTTTCTCTTGTCTTCACCAATGAATTTTGGAAGACTTGTTGCGGTGAATGGCAAACATTTAAGATGGGATtcatgcaaagtttttttttttttttttttttttcatggaaatagatactacttttgtttttgagagATACAGCAGTAAAATGGTGCATagcatttgtgtatttatgtaatattgttcacgtatatttcttttatttatgctACTGCTTGTGAATTACTGAACCCTGTCCTTGAATCAGTGACAGTTTAATTAGCATATACAGTTAATGGAAAATCTTGAATCTCCCAAGATGATACTGTTTTTGATTCGTGTCCTGTTGTTTTCTTCCCCTCCCCTTCCTGTAGAAGTGAATGTTTTATATGACTTATGAAAAGGCCGCGTAGTCGGAAAATGGTATGACTTCATTAATCGAAAATATCTTCATTAATTACATGTGAATTGCActcagcattattttatttatacatccTCCGAACTAGCGTTGGTTCTTTTTAAGGGTAGTCTGTTAATAAACATGGGCGCTTACTGGATTTTAGCCTGAGTAACTCTCGCCCCcctttgttcttttgaaatctCTTAATTTAAGATCTCTACTCGTATTGTAATTAAATCCTGATTTTGGTTTTCAACCTgatctactttttaaaaaaagatgctgCAACTGTACAGCAGAGCTACTTTTAGGGAAGATGATGAATaaaatggtcatttttattgtatgtggCATGTTTTGTATGGATATAATTTtgaattgtacatattttttgaCGTCAGAGGTTGCATCTCTTTATATACGGCTGTCCCTTTCCCTCCCAGCCCtccatttatttctttgtctctgctttctttcttgtaaagaaaaataaaa

Function

symbol description
rps26 Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 10. Orthologous to human RPS26 (ribosomal protein S26).
rps26l Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit.

NR:

description
ribosomal protein S26

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU234236 False 558 TUCP 0.47 4 16007644 16008846
TU234237 True 1791 TUCP 0.37 6 15983670 16083529

Neighbor

gene id symbol gene type direction distance location
LOC122328928 LOC107716074,LOC107563642,LOC107695755,LOC107571700,LOC107687557,LOC107745480 coding upstream 115569 15862039 ~ 15868101 (+)
mipa mipa,LOC107745456,LOC107570312,LOC107668565,LOC107695819,LOC107716194,LOC107571785 coding upstream 247450 15733686 ~ 15736220 (+)
ptges3a ptges3a,ptges3,LOC107745455,LOC107570321,LOC107716195,LOC107695820,LOC107571786 coding upstream 254464 15724783 ~ 15729206 (+)
rnd1b rnd1b,rnd1,LOC107745453,LOC107716191,LOC107668562,LOC103037018,LOC108275505,LOC103358261 coding upstream 281427 15691510 ~ 15702243 (+)
cacnb3b cacnb3b,LOC107695823,LOC107570227,LOC107668566,LOC104967530 coding upstream 298622 15673052 ~ 15685048 (+)
arhgef25a arhgef25a,LOC107570569,LOC107708856,LOC107681953,LOC107716212,LOC107695729 coding downstream 46572 16130101 ~ 16188525 (+)
slc26a10 slc26a10,LOC107708797,LOC107681935,LOC107716215,LOC107586569,LOC107695728,LOC107570587 coding downstream 130427 16213956 ~ 16222046 (+)
c1galt1a c1galt1a,LOC107708852,LOC107571731,LOC107586568,LOC107695751,LOC107716090 coding downstream 152237 16235766 ~ 16240924 (+)
birc5b birc5b,LOC107571769,LOC107708796,LOC107695794,LOC107716091,LOC107586566,LOC107681933 coding downstream 250972 16334501 ~ 16335613 (+)
zgc:153867 zgc:153867,LOC107586536,LOC107570608,LOC105897346 coding downstream 270193 16353722 ~ 16360814 (+)
G158117 NA non-coding upstream 17906 15964752 ~ 15965764 (+)
G158115 NA non-coding upstream 34249 15896647 ~ 15949421 (+)
G158113 NA non-coding upstream 45799 15934939 ~ 15937871 (+)
G158110 NA non-coding upstream 101778 15880663 ~ 15881892 (+)
G158074 scn8aa,LOC107695818,LOC107563626 non-coding upstream 155737 15818461 ~ 15827933 (+)
G158423 NA non-coding downstream 456007 16539536 ~ 16539832 (+)
LOC122328367 NA non-coding downstream 462312 16545841 ~ 16573057 (+)
G158430 LOC107660256 non-coding downstream 465710 16549239 ~ 16549606 (+)
G158434 NA non-coding downstream 471888 16555417 ~ 16555642 (+)
G158437 NA non-coding downstream 525296 16608825 ~ 16611041 (+)
G157620 NA other upstream 679120 15300704 ~ 15304550 (+)
itih6 LOC107737505,LOC107673092,LOC107574689,LOC107695841,LOC107716181,LOC107564649 other upstream 829692 14609529 ~ 15153978 (+)
G157656 megf11,LOC107583869,LOC107672222,LOC107596974,LOC107686294 other upstream 987525 14992350 ~ 14996145 (+)
LOC122328907 mef2d,LOC107741762,LOC107549240,LOC107717782,LOC107597970,LOC107663114,LOC107689865 other upstream 1225453 14725910 ~ 14758217 (+)
LOC122328914 szrd1,LOC107673108,LOC107716129,LOC107737539,LOC107687433,LOC105899027 other upstream 1269115 14712147 ~ 14714555 (+)
LOC122328571 kmt2d,LOC107681934,LOC107716211,LOC107695802,LOC107563643 other downstream 498441 16581970 ~ 16607408 (+)
G158446 atf7a,LOC107563644,LOC107570410,LOC107745462,LOC107681998 other downstream 537669 16621198 ~ 16664314 (+)
LOC122328551 atf7b,atf7a,LOC107711055,LOC107585125,LOC107740570,LOC107667392,LOC107673513,LOC107582698,LOC107681998,LOC107716199,LOC107745462,LOC107570410,LOC107563644,LOC107695816 other downstream 551917 16635446 ~ 16669648 (+)
G158486 NA other downstream 647817 16731346 ~ 16732884 (+)
G158524 NA other downstream 998676 17082205 ~ 17082655 (+)

Expression


Co-expression Network