LOC122329227


Basic Information

Item Value
gene id LOC122329227
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15621942 ~ 15717250 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU234271
GTCATGTGCACAAAGGCAAGCTTTATTACTGGAAAGACAAAGGgagaagtcattttaaaaatgaacattttgaaataaaaccgtgtgaaacaaaaccaaatagTTACCTCAAAAAATGAATCCAAATAAATAAGACTAAGCAATTTTACATCAAGCACATCTTTGTCAATACacaacaagaacaaatatttaatctcgtgacattcttttaaatgtcttaCAAAGATTACAAAACAGGATATGTACAACTGAAGGACTAGAGGACATGCTTGAAGTGTATTTGTTCCCAACATTGTGCAATGGCAGCATAATGACCGAATGTCCATCTCCATCTGGGACGCTCACATTACCCAGAACTTAAATTGGCAGCTACAATGTCTGACCAGCCATGCGACATGTATACACGCTGTTCATACTCCCTAGCACCCAAAATTCATCTTCAGTTTCTTTATTTACGCAGTCACTAGACAATGCAAAAAGGAATTTGGTGTGTGATCACAGTGGCAGAACTTGTAAACAGCTCGCATCTTCCCTTTCGCCACTGATGATtgaacaaaatgagaaaaatattgaCTTCAAGTatacacaaagcaaaaacaattatttgaacaacagttcaaaaatggaaaaatatctTTCGTTAAACAGGACCAGCCTGTTCAGTTTTATTCCAAAAGTCGGCTTCCGTTTCCAGTTTGACTTTGACTGATTCTCAAACATAAAAGCCCTTATCAGGTCAGCTGATCCATATATTTAAAAGGTCCAGTCTGAATTTCCTTCCAGTCCATCTGCTCCTCATGCATTAACCTCCCTTTATGCTCATGAACAGAACACTAATATTCCTATTTggttgaaaagaaaaaactaaatagtgTTGCACTCCAATGGTCATTTTTCATCTAATTACTTTAACAAAGTCTGAACAGAGTCACAATATATTGGCTTGTTTTTACAGCAGTGCTGATGTATGTCCACATAAATATACGTATGTCCACAAAGCAGTAGCATGACTTTATAAtagccttttttgttttaattattgccACTGTACACACCTTGCATTATAAGCACTTGAACCATAATTATTGCTTTGTGGTGAAAAGCAGACTTCAAGATTAGCACTTTGCacaagaaaacatgttttttttttttttttttttttttttttttttttttttttttttttt
>TU234273
ACAGAGGGCGCTGCTTCACCAGTTGTATAAACCCGACTAAACAGTAAACCCGTGGTGTATTTTATCGTGAGTTCCCACTCTGAAACTTAATATCTAAACATCATGTTAACTTATTAATCTAAACATTGAAGaagGTAGCCTGTCAGGAACCACATGGCATTTCTGCGACCATCATCTCACAACAGACGCTCAGTGAGCAGTTCCCCGGTGAGATTGGGAGCTAGGCTGTGTGAAAGTCTCTTGGCTGCCGAGTCGGGGTCTCCACCTCAGCCACATGGCCTCCTGGCAGCGGCCCTCTTTTGGACACCGGCAGCAGCTTGTGCCCCACGCCCCTCACAGATGCTGTGTCTTGAGACAGATGTGCACCCCAGCTCGATATCCAAAGAATCTAGGTGGAGGAGAGGAGCTCGGACTTGCTGGGCAGGTGCAGCAGGCGTTTGGAGAGCCGGCGGGTCGGGCTGGGTTTGGCGAGCGGCTGTAGCTTGTTGATGCAAGCCAGGGCAGCTGTGCGGAACACGCTGTGGATGCTCTTCTCAGAGGTGAAGGCTGAACACTCCAGATAAGCCTCGGCGCCCAACTGTTTGGCCATGGCAGAGCCCTGTGATGGGAGATGCAGTTTCTcagtcagtgtttttaaaagatacaGTTCATAAATGCTGAAGCTTTGTTTGTGTCGTCAGTTGTCTACATAGGtagttaaatattaagtaaGCGTCCTACAATATAAAGGATggctatatgtatatatgtaaccACTTATATCAAGAGAAACGTTTTATTCATATGCGGAAGTATGGAGCAGAACCATAACAGCATTGTACTGAAGCCatagtaattattaaaaatactaaagaaATAAGGTtggtttaactttttaaatatttttctgaattggtggtttgttaggatacaACTATTCAAAGATCTGGAATCGGAGggtgcaacaaaaaaaaattgcatttaaagttgtccaaattaagtccAAAAAATCTGTTTGGTATgaagtttacaaaatatcttcatgtaaCGC
>TU234274
ACAGAGGGCGCTGCTTCACCAGTTGTATAAACCCGACTAAACAGTAAACCCGTGGTGTATTTTATCGTAGCCTGTCAGGAACCACATGGCATTTCTGCGACCATCATCTCACAACAGACGCTCAGTGAGCAGTTCCCCGGTGAGATTGGGAGCTAGGCTGTGTGAAAGTCTCTTGGCTGCCGAGTCGGGGTCTCCACCTCAGCCACATGGCCTCCTGGCAGCGGCCCTCTTTTGGACACCGGCAGCAGCTTGTGCCCCACGCCCCTCACAGATGCTGTGTCTTGAGACAGATGTGCACCCCAGCTCGATATCCAAAGAATCTAGGTGGAGGAGAGGAGCTCGGACTTGCTGGGCAGGTGCAGCAGGCGTTTGGAGAGCCGGCGGGTCGGGCTGGGTTTGGCGAGCGGCTGTAGCTTGTTGATGCAAGCCAGGGCAGCTGTGCGGAACACGCTGTGGATGCTCTTCTCAGAGGTGAAGGCTGAACACTCCAGATAAGCCTCGGCGCCCAACTGTTTGGCCATGGCAGAGCCCTGTGATGGGAGATGCAGTTTCTcagtcagtgtttttaaaagatacaGTTCATAAATGCTGAAGCTTTGTTTGTGTCGTCAGTTGTCTACATAGGtagttaaatattaagtaaGCGTCCTACAATATAAAGGATggctatatgtatatatgtaaccACTTATATCAAGAGAAACGTTTTATTCATATGCGGAAGTATGGAGCAGAACCATAACAGCATTGTACTGAAGCCatagtaattattaaaaatactaaagaaATAAGGTtggtttaactttttaaatatttttctgaattggtggtttgttaggatacaACTATTCAAAGATCTGGAATCGGAGggtgcaacaaaaaaaaattgcatttaaagttgtccaaattaagtccAAAAAATCTGTTTGGTATgaagtttacaaaatatcttcatgtaaCGC
>XR_006247887.1
GGCGCTGCTTCACCAGTTGTATAAACCCGACTAAACAGTAAACCCGTGGTGTATTTTATCGTGAGTTCCCACTCTGAAACTTAATATCTAAACATCATGTTAACTTATTAATCTAAACATTGAAGaagGTAGCCTGTCAGGAACCACATGGCATTTCTGCGACCATCATCTCACAACAGACGCTCAGTGTTCCCCGGTGAGATTGGGAGCTAGGCTGTGTGAAAGTCTCTTGGCTGCCGAGTCGGGGTCTCCACCTCAGCCACATGGCCTCCTGGCAGCGGCCCTCTTTTGGACACCGGCAGCAGCTTGTGCCCCACGCCCCTCACAGATGCTGTGTCTTGAGACAGATGTGCACCCCAGCTCGATATCCAAAGAATCTAGGTGGAGGAGAGGAGCTCGGACTTGCTGGGCAGGTGCAGCAGGCGTTTGGAGAGCCGGCGGGTCGGGCTGGGTTTGGCGAGCGGCTGTAGCTTGTTGATGCAAGCCAGGGCAGCTGTGCGGAACACGCTGTGGATGC
>XR_006247888.1
GGCGCTGCTTCACCAGTTGTATAAACCCGACTAAACAGTAAACCCGTGGTGTATTTTATCGTAGCCTGTCAGGAACCACATGGCATTTCTGCGACCATCATCTCACAACAGACGCTCAGTGTTCCCCGGTGAGATTGGGAGCTAGGCTGTGTGAAAGTCTCTTGGCTGCCGAGTCGGGGTCTCCACCTCAGCCACATGGCCTCCTGGCAGCGGCCCTCTTTTGGACACCGGCAGCAGCTTGTGCCCCACGCCCCTCACAGATGCTGTGTCTTGAGACAGATGTGCACCCCAGCTCGATATCCAAAGAATCTAGGTGGAGGAGAGGAGCTCGGACTTGCTGGGCAGGTGCAGCAGGCGTTTGGAGAGCCGGCGGGTCGGGCTGGGTTTGGCGAGCGGCTGTAGCTTGTTGATGCAAGCCAGGGCAGCTGTGCGGAACACGCTGTGGATGC

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU234271 True 1187 lncRNA 0.34 2 15621942 15702230
TU234273 False 1030 TUCP 0.45 4 15699269 15717250
TU234274 False 962 TUCP 0.46 4 15699269 15717250
XR_006247887.1 False 517 lncRNA 0.55 4 15699771 15717244
XR_006247888.1 False 449 lncRNA 0.58 4 15699771 15717244

Neighbor

gene id symbol gene type direction distance location
galnt6 galnt6,LOC107695825,LOC107570209,LOC107668563,LOC107568460 coding downstream 1138 15611615 ~ 15620804 (-)
hspg2 hspg2,LOC107745451,LOC107695829 coding downstream 23916 15510955 ~ 15598026 (-)
si:dkey-205h13.2 LOC107716170 coding downstream 115296 15502428 ~ 15506646 (-)
tmem269 LOC107570193,LOC107726151,LOC107695831,LOC107668567,LOC107568457 coding downstream 131674 15479040 ~ 15490268 (-)
LOC122328900 rsbn1,LOC107668555,LOC107570136,LOC107737499,LOC107716162,LOC107564641,LOC107695834,LOC100330644 coding downstream 274744 15339059 ~ 15347198 (-)
dtx3 zgc:66440,LOC107745454,LOC107570277,LOC107695821,LOC107571783,LOC107716192,LOC107668558 coding upstream 2008 15719258 ~ 15724002 (-)
stat6 LOC107570234,LOC107745457,LOC107571782 coding upstream 20351 15737601 ~ 15756066 (-)
fignl2 si:dkey-157g16.6,LOC107745458,LOC107570337,LOC107687555,LOC107571780,LOC107716072,LOC107695734 coding upstream 42635 15759885 ~ 15808524 (-)
scn8aa scn8aa,LOC107570345,LOC107745459,LOC107695818,LOC107716197,LOC107563626 coding upstream 97459 15814709 ~ 15860823 (-)
dip2ba dip2ba,LOC107745461,LOC107687534,LOC107563628,LOC107570362,LOC107695817,LOC107716198 coding upstream 151090 15868340 ~ 15905969 (-)
G158174 LOC107571455 non-coding downstream 14862 15603848 ~ 15607080 (-)
G158024 si:ch73-206d17.1,LOC107571682,LOC107726152,LOC107695830 non-coding downstream 144173 15476487 ~ 15477769 (-)
G157984 NA non-coding downstream 283099 15210228 ~ 15338843 (-)
G158019 NA non-coding downstream 325306 15295888 ~ 15296636 (-)
G158014 NA non-coding downstream 417992 15202366 ~ 15203950 (-)
G158198 NA non-coding upstream 10904 15728154 ~ 15789331 (-)
G158208 NA non-coding upstream 95031 15812281 ~ 15812927 (-)
G158227 NA non-coding upstream 247503 15964753 ~ 15965763 (-)
G158282 NA non-coding upstream 384375 16101625 ~ 16102214 (-)
G158284 NA non-coding upstream 400631 16117881 ~ 16118214 (-)
magi3a magi3,magi3a,LOC107695739,LOC107564661 other downstream 147552 15347417 ~ 15474390 (-)
LOC122328902 LOC107737500,LOC107673074,LOC107695835,LOC107564653,LOC108275744 other downstream 320260 14684890 ~ 15301682 (-)
LOC122328913 zgc:162898,c4h15orf61,LOC107738714,LOC107686305,LOC107583911,LOC107718314,LOC107596966,LOC107672207 other downstream 573598 15047152 ~ 15048344 (-)
fitm2 LOC107673062,LOC107737511,LOC107568407,LOC107564660,LOC107716178,LOC107668335 other downstream 1032320 14570347 ~ 14589622 (-)
G157909 LOC107673054,LOC107737519,LOC107716153,LOC107591065 other downstream 1291158 14326966 ~ 14330784 (-)
G158231 NA other upstream 290856 16008106 ~ 16008915 (-)
G158288 LOC107708856,LOC107570569,LOC107716212,LOC107681953,LOC107695729 other upstream 426583 16143833 ~ 16169834 (-)
tac3a LOC107708854,LOC107571761,LOC107681951,LOC107586540,LOC107695797 other upstream 523560 16240810 ~ 16243395 (-)
G158336 LOC107716221,LOC107570608,LOC107586536,LOC106567035 other upstream 638119 16355369 ~ 16358705 (-)
slc48a1a slc48a1a,LOC107671836,LOC107598487,LOC107594008,LOC107756371,LOC107697869,LOC107757747 other upstream 1459375 17176625 ~ 17184385 (-)

Expression


Co-expression Network