tac3a (LOC107708854,LOC107571761,LOC107681951,LOC107586540,LOC107695797)


Basic Information

Item Value
gene id tac3a
gene name LOC107708854,LOC107571761,LOC107681951,LOC107586540,LOC107695797
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 16240810 ~ 16243395 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU234490
TAACAAAAGAGGCTATGGTTTGTCCTTTTAAGGAATGCCTCACGCCTCTGATGTCAGGATCTCAATTGCACGGTCATTGCTGATGCAGACTACAAACGCTTAAACCACACCTACACTGCGACATCTGATTGGACTTACGCACATGTTGCTATCATTTAACAATCAGACAGGAGAGAATCCTTGTCTCTGTGTCTCGTCTGAGAGTCCATCACAAAAGGATTTAACTCCTCGACCACAAACTTGAACTCAGCTGTTTCCTCATAGCACTATCCTCAGTTCAGACTTATCTGTAAAGATGTACCGTGGGCTAGTGTTactgtttttggttttggtgCTGGAAACCCGATGGAGTGAGTCGAGCTGTCAGCAGTCAGAGTCTCAGAGATCAGTTTCAGGCGAGAGTCCGAGTTTTCGGCTGTCGGCTCATAACTTGCTGAAGAGGTATAATGACATAGATTATGACAGTTTCGTCGGATTAATGGGGCGCAGGAACGCCGACACAGACGATATACCACCTCAGCGTAAAAgAGAAATGCACGATATCTTTGTTGGACTCATGGGGCGACGAAGCGCTGAccctgaaaCTGGGCGTCCATGGAGGAAAGAGTATCCAGAAACGGGCTCCAGCGGAGGCATCTTCTTCAACAAATGCAAACTGAGGTTTCGTCGTGGGTTATAGGAAAATGAATCGTTTCATATCCAGTGAATCATCTATCCCACCCTGTCATGACAGCTTCTTTTCAAGTCATTTCTTTggagcaacaaaaaaaagtcataatttattttacgaAAGTAATagagcaaaagaaaatatttatataagacgaatcaaataaacatgatttccTATGGCGTGATTCGTTTCATTGTACTACAAATTATGCATTATCCTAGATTATATATCGCCACATTTACATATCCACTTACGTCCCCTGCATATCaatatatttaagttatttttgatGTCTAATGTATAAAACgtgatttttgtaaataaaaatattatctaTCTGATCTCACAATgtattatgatttaaatgtttaaaaaagcataaaatgcaGGGACACCGcaaaatactgtacatatataattatcTGCATCAAACACATATGCATTCGAACTTGATGTCAACTTAATCATGCTAGAGGGAACATGATGTCcacaatactaatatttaacatttacttgACTTCCGAATGTTAGTGCTTTGGATATCTGTAGATTGTTAAAACACAGCATGTCTTTTTTTCGTAAAGGAACACAGACAACA
>XM_043224075.1
ACTGCGACATCTGATTGGACTTACGCACATGTTGCTATCATTTAACAATCAGACAGGAGAGAATCCTTGTCTCTGTGTCTCGTCTGAGAGTCCATCACAAAAGGATTTAACTCCTCGACCACAAACTTGAACTCAGCTGTTTCCTCATAGCACTATCCTCAGTTCAGACTTATCTGTAAAGATGTACCGTGGGCTAGTGTTactgtttttggttttggtgCTGGAAACCCGATGGAGTGAGTCGAGCTGTCAGCAGTCAGAGTCTCAGAGATCAGTTTCAGGCGAGAGTCCGAGTTTTCGGCTGTCGGCTCATAACTTGCTGAAGAGGTATAATGACATAGATTATGACAGTTTCGTCGGATTAATGGGGCGCAGGAACGCCGACACAGACGATATACCACCTCAGCGTAAAAgAGAAATGCACGATATCTTTGTTGGACTCATGGGGCGACGAAGCGCTGAccctgaaaCTGGGCGTCCATGGAGGAAAGAGTATCCAGAAACGGGCTCCAGCGGAGGCATCTTCTTCAACAAATGCAAACTGAGGTTTCGTCGTGGGTTATAGGAAAATGAATCGTTTCATATCCAGTGAATCATCTATCCCACCCTGTCATGACAGCTTCTTTTCAAGTCATTTCTTTggagcaacaaaaaaaagtcataatttattttacgaAAGTAATagagcaaaagaaaatatttatataagacgaatcaaataaacatgatttccTATGGCGTGATTCGTTTCATTGTACTACAAATTATGCATTATCCTAGATTATATATCGCCACATTTACATATCCACTTACGTCCCCTGCATATCaatatatttaagttatttttgatGTCTAATGTATAAAACgtgatttttgtaaataaaaatattatctaTCTGATCTCA

Function

NR:

description
tachykinin-3

GO:

id name namespace
GO:0007217 tachykinin receptor signaling pathway biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU234490 True 1271 TUCP 0.39 7 16240810 16243395
XM_043224075.1 False 905 mRNA 0.40 7 16241062 16243281

Neighbor

gene id symbol gene type direction distance location
b4galnt1a b4galnt1a,LOC107708855,LOC107681939,LOC107586541,LOC107716216,LOC107570598,LOC107695798 coding downstream 6236 16222809 ~ 16234574 (-)
sp5l sp5l,LOC107708798,LOC107681947,LOC107695752,LOC107586542,LOC107571725,LOC108276147,LOC108432429 coding downstream 48132 16189431 ~ 16192678 (-)
ankrd33aa ankrd33aa,LOC107708858,LOC107570559,LOC107563641,LOC107716213,LOC107695800,LOC108433401 coding downstream 114399 16118392 ~ 16126411 (-)
acvrl1 acvrl1,LOC107695804,LOC107708857,LOC107570535,LOC107681938 coding downstream 125526 16102408 ~ 16115284 (-)
acvr1ba LOC107708859,LOC107570552,LOC107681940,LOC107716207,LOC107695803 coding downstream 141051 16083732 ~ 16099759 (-)
znf385a LOC107695795,LOC107716219,LOC107586538,LOC107570601,LOC107708851,LOC107681944 coding upstream 15680 16259075 ~ 16331672 (-)
neurod4 LOC107716220,LOC107695793,LOC107586565,LOC107683357,LOC107571777,LOC107708795 coding upstream 98051 16341446 ~ 16344687 (-)
c1ql4a LOC107716093,LOC107708794,LOC107681949,LOC107571784,LOC107695791,LOC107586535 coding upstream 116294 16359689 ~ 16376808 (-)
tmem107l tmem107l,tmem107,LOC107571795,LOC107695749,LOC108433473,LOC107708779 coding upstream 156410 16399805 ~ 16401705 (-)
ribc1 LOC107681983,LOC107708847,LOC107570642,LOC107695788,LOC107586532,LOC107716094 coding upstream 244831 16488226 ~ 16505803 (-)
G158284 NA non-coding downstream 122596 16117881 ~ 16118214 (-)
G158282 NA non-coding downstream 138596 16101625 ~ 16102214 (-)
G158227 NA non-coding downstream 275047 15964753 ~ 15965763 (-)
G158208 NA non-coding downstream 427883 15812281 ~ 15812927 (-)
G158198 NA non-coding downstream 451479 15728154 ~ 15789331 (-)
G158333 NA non-coding upstream 3621 16247016 ~ 16247293 (-)
G158353 NA non-coding upstream 173530 16416925 ~ 16439280 (-)
G158377 NA non-coding upstream 180569 16423964 ~ 16424362 (-)
G158383 NA non-coding upstream 189566 16432961 ~ 16433629 (-)
G158388 NA non-coding upstream 200411 16443806 ~ 16444037 (-)
G158288 LOC107708856,LOC107570569,LOC107716212,LOC107681953,LOC107695729 other downstream 70976 16143833 ~ 16169834 (-)
G158231 NA other downstream 231895 16008106 ~ 16008915 (-)
LOC122329227 NA other downstream 523560 15621942 ~ 15717250 (-)
magi3a magi3,magi3a,LOC107695739,LOC107564661 other downstream 766420 15347417 ~ 15474390 (-)
LOC122328902 LOC107737500,LOC107673074,LOC107695835,LOC107564653,LOC108275744 other downstream 939128 14684890 ~ 15301682 (-)
G158336 LOC107716221,LOC107570608,LOC107586536,LOC106567035 other upstream 111974 16355369 ~ 16358705 (-)
slc48a1a slc48a1a,LOC107671836,LOC107598487,LOC107594008,LOC107756371,LOC107697869,LOC107757747 other upstream 933230 17176625 ~ 17184385 (-)
G158609 NA other upstream 1095872 17339267 ~ 17343385 (-)
coq10a si:dkey-190g6.2,LOC107671896,LOC107715030,LOC107598614,LOC107697969,LOC102210977,LOC108425511,LOC102797363 other upstream 1170308 17413703 ~ 17422517 (-)
march9 march9,LOC107593952,LOC107664138,LOC107714987,LOC107706970,LOC107599679,LOC107697857,LOC107088728,LOC108433385,LOC103130462,LOC105930772 other upstream 1802531 18045926 ~ 18058739 (-)

Expression


Co-expression Network