G158430 (LOC107660256)


Basic Information

Item Value
gene id G158430
gene name LOC107660256
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 16549239 ~ 16549606 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU234640
ctcagctccttcttcaccatgacagaccagtacagcgaccgcattactgcagaagctgcaccgatccgtctgtcgatctctcgttccatccttccctcactcgtgaacaagaccccaagatacttaaactcctccacctggggcaggagctccccaccaacctgaagggggcaagccacccttgtccgactgaggaccatggcctcagacttggaggtgctgattctcatcccagccgcttcacactcagctgcaaaccgccccagcgcacactgtaggtcttggccagatgtagccaacagaacaacatcatcagcaaaaagcagagaagctattctgtggtcaccaaaccagaccccctccggccc

Function

NR:

description
PREDICTED: uncharacterized protein LOC107660256

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU234640 True 368 lncRNA 0.56 1 16549239 16549606

Neighbor

gene id symbol gene type direction distance location
LOC122329124 masp2,LOC107708846,LOC107571531 coding upstream 10218 16529872 ~ 16539021 (+)
LOC122328557 sst3,cort,LOC107586562,LOC107695747,LOC107716096 coding upstream 34335 16513107 ~ 16514904 (+)
srm srm,LOC107716095,LOC107708792,LOC107586563,LOC107681959,LOC107695748,LOC107570652 coding upstream 38910 16505922 ~ 16510329 (+)
smc1a smc1a,LOC107716226,LOC107695786,LOC107586531 coding upstream 43641 16494956 ~ 16505598 (+)
l1cama LOC107708848,LOC107681982,LOC107570628,LOC107716224,LOC107586533,LOC107695787 coding upstream 59160 16445121 ~ 16490079 (+)
LOC122328394 asb8,LOC107745463,LOC107681993,LOC107570421,LOC107563629,LOC107695815 coding downstream 67563 16617169 ~ 16619703 (+)
LOC122328573 NA coding downstream 605589 17155195 ~ 17162236 (+)
rapgef3 rapgef3,LOC107723737,LOC107671875,LOC107598495,LOC107697977,LOC107756413 coding downstream 631266 17180872 ~ 17214492 (+)
dazap2 dazap2,LOC107715036,LOC107671873,LOC107756418,LOC107697974,LOC107594003,LOC107598568 coding downstream 783639 17333245 ~ 17338936 (+)
si:ch211-210c8.6 si:ch211-210c8.6,LOC107756419,LOC107598584,LOC105906836,LOC106567173 coding downstream 799643 17349249 ~ 17354410 (+)
G158423 NA non-coding upstream 9407 16539536 ~ 16539832 (+)
G158117 NA non-coding upstream 583475 15964752 ~ 15965764 (+)
G158115 NA non-coding upstream 599818 15896647 ~ 15949421 (+)
G158113 NA non-coding upstream 611368 15934939 ~ 15937871 (+)
G158110 NA non-coding upstream 667347 15880663 ~ 15881892 (+)
G158434 NA non-coding downstream 5811 16555417 ~ 16555642 (+)
G158437 NA non-coding downstream 59219 16608825 ~ 16611041 (+)
G158482 NA non-coding downstream 175506 16725112 ~ 16725449 (+)
LOC122329245 NA non-coding downstream 262241 16811847 ~ 16816617 (+)
G158489 NA non-coding downstream 282500 16832106 ~ 16836166 (+)
G158152 rps26,RPS26,rps26l,LOC107563646 other upstream 465710 15983670 ~ 16083529 (+)
G158162 dnajc22,LOC107708801,LOC107716089,LOC107563648,LOC107571715,LOC107695753 other upstream 525845 16022199 ~ 16023394 (+)
G157620 NA other upstream 1244689 15300704 ~ 15304550 (+)
G157656 megf11,LOC107583869,LOC107672222,LOC107596974,LOC107686294 other upstream 1553094 14992350 ~ 14996145 (+)
LOC122328907 mef2d,LOC107741762,LOC107549240,LOC107717782,LOC107597970,LOC107663114,LOC107689865 other upstream 1791022 14725910 ~ 14758217 (+)
LOC122328571 kmt2d,LOC107681934,LOC107716211,LOC107695802,LOC107563643 other downstream 32364 16581970 ~ 16607408 (+)
G158446 atf7a,LOC107563644,LOC107570410,LOC107745462,LOC107681998 other downstream 71592 16621198 ~ 16664314 (+)
LOC122328551 atf7b,atf7a,LOC107711055,LOC107585125,LOC107740570,LOC107667392,LOC107673513,LOC107582698,LOC107681998,LOC107716199,LOC107745462,LOC107570410,LOC107563644,LOC107695816 other downstream 85840 16635446 ~ 16669648 (+)
G158486 NA other downstream 181740 16731346 ~ 16732884 (+)
G158524 NA other downstream 532599 17082205 ~ 17082655 (+)

Expression


Co-expression Network