G158446 (atf7a,LOC107563644,LOC107570410,LOC107745462,LOC107681998)


Basic Information

Item Value
gene id G158446
gene name atf7a,LOC107563644,LOC107570410,LOC107745462,LOC107681998
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 16621198 ~ 16664314 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU234659
agagagagagtgggatAGAGGGGCGCTGTGTTATATTGCAAAGCCTTTGCAAAGATGGGGGACGACAAGCCTTTTGTGTGCAGTGCTCCTGGCTGTGGGCAGAGGTTTACTAATGAGGATCACCTGGCTGtccataaacacaaacatgaaatGACGCTGAAGTTTGGACCGGCTAGAACTGACTCAGTCATCATTGCAGACCAGACGCCGACTCCCACTCGTTTCCTGAAAAACTGTGAAGAGGTGGGCTTGTTCAATGAGCTGGCCAGCTCGTTCGAGCAGGAGTTCCCTAAGGCCCAGGAAGATGAGGACAAGAAGGCCAAGAATCCGTTGCCTGCTCCTAATTCAGGAGCGCTTGACATGAGTTTGCAGACGCCTTCAGACGTTAAGGTGAAGGAGGAGGACCCTGTGGAGGTGGACTCTTCTCCGCCTGCCAGCCCTGACTCCATCTCCAGCATGtcagacagcagcagagagCCTGTAAGCAGAGGAAAGGATTCTCCTCCAAAGCATGCCATCAGTTCGGCTCCCACCCCTGCCATAGTGCGTCCTGGCTCCCTCCCGCTGCACCTGGGTTATGACGGCCTGCAGCCCACCATGCCCTCCCCTACCTCCGTCATCACGCACACCCCACCA

Function

symbol description
atf7a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and cAMP response element binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in axial chorda mesoderm and notochord. Orthologous to human ATF7 (activating transcription factor 7).

NR:

description
PREDICTED: cyclic AMP-dependent transcription factor ATF-7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU234659 True 636 TUCP 0.55 6 16621198 16664314

Neighbor

gene id symbol gene type direction distance location
LOC122328394 asb8,LOC107745463,LOC107681993,LOC107570421,LOC107563629,LOC107695815 coding upstream 1495 16617169 ~ 16619703 (+)
LOC122329124 masp2,LOC107708846,LOC107571531 coding upstream 82177 16529872 ~ 16539021 (+)
LOC122328557 sst3,cort,LOC107586562,LOC107695747,LOC107716096 coding upstream 106294 16513107 ~ 16514904 (+)
srm srm,LOC107716095,LOC107708792,LOC107586563,LOC107681959,LOC107695748,LOC107570652 coding upstream 110869 16505922 ~ 16510329 (+)
smc1a smc1a,LOC107716226,LOC107695786,LOC107586531 coding upstream 115600 16494956 ~ 16505598 (+)
LOC122328573 NA coding downstream 490881 17155195 ~ 17162236 (+)
rapgef3 rapgef3,LOC107723737,LOC107671875,LOC107598495,LOC107697977,LOC107756413 coding downstream 516558 17180872 ~ 17214492 (+)
dazap2 dazap2,LOC107715036,LOC107671873,LOC107756418,LOC107697974,LOC107594003,LOC107598568 coding downstream 668931 17333245 ~ 17338936 (+)
si:ch211-210c8.6 si:ch211-210c8.6,LOC107756419,LOC107598584,LOC105906836,LOC106567173 coding downstream 684935 17349249 ~ 17354410 (+)
LOC122329248 LOC107671862,LOC107756420,LOC107697970,LOC101886435,LOC107594036,LOC108425513 coding downstream 698049 17362363 ~ 17402848 (+)
G158437 NA non-coding upstream 10157 16608825 ~ 16611041 (+)
LOC122328367 NA non-coding upstream 48141 16545841 ~ 16573057 (+)
G158434 NA non-coding upstream 65556 16555417 ~ 16555642 (+)
G158430 LOC107660256 non-coding upstream 71592 16549239 ~ 16549606 (+)
G158423 NA non-coding upstream 81366 16539536 ~ 16539832 (+)
G158482 NA non-coding downstream 60798 16725112 ~ 16725449 (+)
LOC122329245 NA non-coding downstream 147533 16811847 ~ 16816617 (+)
G158489 NA non-coding downstream 167792 16832106 ~ 16836166 (+)
LOC122328456 NA non-coding downstream 487667 17151981 ~ 17153332 (+)
G158527 NA non-coding downstream 515117 17179431 ~ 17180457 (+)
LOC122328571 kmt2d,LOC107681934,LOC107716211,LOC107695802,LOC107563643 other upstream 13790 16581970 ~ 16607408 (+)
G158152 rps26,RPS26,rps26l,LOC107563646 other upstream 537669 15983670 ~ 16083529 (+)
G158162 dnajc22,LOC107708801,LOC107716089,LOC107563648,LOC107571715,LOC107695753 other upstream 597804 16022199 ~ 16023394 (+)
G157620 NA other upstream 1316648 15300704 ~ 15304550 (+)
G157656 megf11,LOC107583869,LOC107672222,LOC107596974,LOC107686294 other upstream 1625053 14992350 ~ 14996145 (+)
G158486 NA other downstream 67032 16731346 ~ 16732884 (+)
G158524 NA other downstream 417891 17082205 ~ 17082655 (+)
G158523 NA other downstream 441184 17105498 ~ 17171839 (+)
si:ch211-148l7.4 LOC107715028,LOC107671835,LOC107593999,LOC107697967,LOC107706980 other downstream 758806 17423120 ~ 17426633 (+)
snrpg snrpg,LOC107671841,LOC107594056,LOC107598637,LOC107706979 other downstream 762419 17426733 ~ 17428031 (+)

Expression


Co-expression Network