G158482


Basic Information

Item Value
gene id G158482
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 16725112 ~ 16725449 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU234704
GTTTTTGTACAGTGTTCTTGTGTTTCCTGTCACTGTGGGCTGCAGAGCACAGTAGTAAAGAGCAGAGTCTGatacagcagcagaggagatCTCCAGATCCACATtggtctgtttttcttttctgaaattAGTGCTGAATCTTTTATCTACACCAGAGGTCTGAGCTTTTTTTGTTCCATCTGAGATGAGCACAAGGAACTCAGGAGCCGATCCGGGATACTGACGGTACCAAAGTAAAGACCAAGCAGATGAATAACTGCAGGATAATGTAACATTTGAACCTTCAGCAGCAAACTCCTCAGTTTTGTCTGGTGTAATAGTATCTCCATTACTGGCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU234704 True 338 lncRNA 0.43 1 16725112 16725449

Neighbor

gene id symbol gene type direction distance location
LOC122328394 asb8,LOC107745463,LOC107681993,LOC107570421,LOC107563629,LOC107695815 coding upstream 105409 16617169 ~ 16619703 (+)
LOC122329124 masp2,LOC107708846,LOC107571531 coding upstream 186091 16529872 ~ 16539021 (+)
LOC122328557 sst3,cort,LOC107586562,LOC107695747,LOC107716096 coding upstream 210208 16513107 ~ 16514904 (+)
srm srm,LOC107716095,LOC107708792,LOC107586563,LOC107681959,LOC107695748,LOC107570652 coding upstream 214783 16505922 ~ 16510329 (+)
smc1a smc1a,LOC107716226,LOC107695786,LOC107586531 coding upstream 219514 16494956 ~ 16505598 (+)
LOC122328573 NA coding downstream 429746 17155195 ~ 17162236 (+)
rapgef3 rapgef3,LOC107723737,LOC107671875,LOC107598495,LOC107697977,LOC107756413 coding downstream 455423 17180872 ~ 17214492 (+)
dazap2 dazap2,LOC107715036,LOC107671873,LOC107756418,LOC107697974,LOC107594003,LOC107598568 coding downstream 607796 17333245 ~ 17338936 (+)
si:ch211-210c8.6 si:ch211-210c8.6,LOC107756419,LOC107598584,LOC105906836,LOC106567173 coding downstream 623800 17349249 ~ 17354410 (+)
LOC122329248 LOC107671862,LOC107756420,LOC107697970,LOC101886435,LOC107594036,LOC108425513 coding downstream 636914 17362363 ~ 17402848 (+)
G158437 NA non-coding upstream 114071 16608825 ~ 16611041 (+)
LOC122328367 NA non-coding upstream 152055 16545841 ~ 16573057 (+)
G158434 NA non-coding upstream 169470 16555417 ~ 16555642 (+)
G158430 LOC107660256 non-coding upstream 175506 16549239 ~ 16549606 (+)
G158423 NA non-coding upstream 185280 16539536 ~ 16539832 (+)
LOC122329245 NA non-coding downstream 86398 16811847 ~ 16816617 (+)
G158489 NA non-coding downstream 106657 16832106 ~ 16836166 (+)
LOC122328456 NA non-coding downstream 426532 17151981 ~ 17153332 (+)
G158527 NA non-coding downstream 453982 17179431 ~ 17180457 (+)
G158542 NA non-coding downstream 564495 17289944 ~ 17291543 (+)
LOC122328551 atf7b,atf7a,LOC107711055,LOC107585125,LOC107740570,LOC107667392,LOC107673513,LOC107582698,LOC107681998,LOC107716199,LOC107745462,LOC107570410,LOC107563644,LOC107695816 other upstream 55464 16635446 ~ 16669648 (+)
G158446 atf7a,LOC107563644,LOC107570410,LOC107745462,LOC107681998 other upstream 60798 16621198 ~ 16664314 (+)
LOC122328571 kmt2d,LOC107681934,LOC107716211,LOC107695802,LOC107563643 other upstream 117704 16581970 ~ 16607408 (+)
G158152 rps26,RPS26,rps26l,LOC107563646 other upstream 641583 15983670 ~ 16083529 (+)
G158162 dnajc22,LOC107708801,LOC107716089,LOC107563648,LOC107571715,LOC107695753 other upstream 701718 16022199 ~ 16023394 (+)
G158486 NA other downstream 5897 16731346 ~ 16732884 (+)
G158524 NA other downstream 356756 17082205 ~ 17082655 (+)
G158523 NA other downstream 380049 17105498 ~ 17171839 (+)
si:ch211-148l7.4 LOC107715028,LOC107671835,LOC107593999,LOC107697967,LOC107706980 other downstream 697671 17423120 ~ 17426633 (+)
snrpg snrpg,LOC107671841,LOC107594056,LOC107598637,LOC107706979 other downstream 701284 17426733 ~ 17428031 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016611 tradv25.0.4 coding NC_007113.7 CM002886.2 36312612 ~ 36313144 (-)
striped catfish (Pangasianodon hypophthalmus) LOC117596944 NA non-coding NC_047598.1 CM018544.1 32880711 ~ 32881365 (+)