LOC122328456


Basic Information

Item Value
gene id LOC122328456
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 17151981 ~ 17153332 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU234776
AAAGAGGATCACACTGCTGCTCATCACCACGGGACTCGAGCACACAGTGGGACGTTCACACAAGACCTTCGCACTAAACGTTTaggcctttttattttaacagaaaacgATCTCtgactttttgtttctttagcGCCAATTTGGATCTAACGTCACGAGCAAGGTACAGGCGTGCCCGGGGAAGCCGAAAAGCGGTTTTATCTGCTCTGTGAATTCTATCCTTCATTCCACCGGAGTCTGTGTAGCTGTCCAATCAGATTTCAGTGGTGTGAAGTGTAGGAGACACGGAAAAGTTCACTTTTTTCCGCAAGCACAGATGAGAGGTGAAACGCATGTCAAGAACCCAGGCTTTCGAAGGCATGCGTGGCTAGTTTTGCATTGTAGTGTAATTTGCCGTGTGCTTTCACCCTTGCGCGGATCAATGCAGGCCGTGACAGTTGTATGCTAAACGCTGTGAATGTTAAGCCCCGGCTGTCCTATTGTGCATTTAAGTGCAGCGTATCTAAACATCTATGTAAAGTGTCGTACCTCACCCTGCCCTTTAGCTCACCGCTCCAGCTCCGCACAACATGGCATGTTTGTTCATTTGCTGTTGTGGAGAGAGCAGAGGCGGGCTGagcaaacacacgcacacacccacacatacaAGATTCACAAAACCTGCCAAGATGTATTTAAGCATGCTGGTTTAGCCTTTATCCTCTCAACCCACACTAATAAACTCactttacaaaatgtgtttgtgtgaattgCTTAATCCTGACAATAAACtgctataataaaa
>XR_006247795.1
CACTGCTGCTCATCACCACGGGACTCGAGCACACAGTGGGACGTTCACACAAGACCTTCGCACTAAACGTTTaggcctttttattttaacagaaaacgATCTCtgactttttgtttctttagcGCCAATTTGGATCTAACGTCACGAGCAAGGTACAGGCGTGCCCGGGGAAGCCGAAAAGCGGTTTTATCTGCTCTGTGAATTCTATCCTTCATTCCACCGGAGTCTGTGTAGCTGTCCAATCAGATTTCAGTGGTGTGAAGTGTAGGAGACACGGAAAAGTTCACTTTTTTCCGCAAGCACAGATGAGAGGTGAAACGCATGTCAAGAACCCAGGCTTTCGAAGGCATGCGTGGCTAGTTTTGCATTGTAGTGTAATTTGCCGTGTGCTTTCACCCTTGCGCGGATCAATGCAGGCCGTGACAGTTGTATGCTAAACGCTGTGAATGTTAAGCCCCGGCTGTCCTATTGTGCATTTAAGTGCAGCGTATCTAAACATCTATGTAAAGTGTCGTACCTCACCCTGCCCTTTAGCTCACCGCTCCAGCTCCGCACAACATGGCATGTTTGTTCATTTGCTGTTGTGGAGAGAGCAGAGGCGGGCTGagcaaacacacgcacacacccacacatacaAGATTCACAAAACCTGCCAAGATGTATTTAAGCATGCTGGTTTAGCCTTTATCCTCTCAACCCACACTAATAAACTCactttacaaaatgtgtttgtgtgaattgCTTAATCCTGACAATAAACtgctataataaaacataacccTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU234776 True 784 lncRNA 0.46 2 17151981 17153322
XR_006247795.1 False 783 lncRNA 0.46 2 17151992 17153332

Neighbor

gene id symbol gene type direction distance location
LOC122328394 asb8,LOC107745463,LOC107681993,LOC107570421,LOC107563629,LOC107695815 coding upstream 532278 16617169 ~ 16619703 (+)
LOC122329124 masp2,LOC107708846,LOC107571531 coding upstream 612960 16529872 ~ 16539021 (+)
LOC122328557 sst3,cort,LOC107586562,LOC107695747,LOC107716096 coding upstream 637077 16513107 ~ 16514904 (+)
srm srm,LOC107716095,LOC107708792,LOC107586563,LOC107681959,LOC107695748,LOC107570652 coding upstream 641652 16505922 ~ 16510329 (+)
smc1a smc1a,LOC107716226,LOC107695786,LOC107586531 coding upstream 646383 16494956 ~ 16505598 (+)
LOC122328573 NA coding downstream 1863 17155195 ~ 17162236 (+)
rapgef3 rapgef3,LOC107723737,LOC107671875,LOC107598495,LOC107697977,LOC107756413 coding downstream 27540 17180872 ~ 17214492 (+)
dazap2 dazap2,LOC107715036,LOC107671873,LOC107756418,LOC107697974,LOC107594003,LOC107598568 coding downstream 179913 17333245 ~ 17338936 (+)
si:ch211-210c8.6 si:ch211-210c8.6,LOC107756419,LOC107598584,LOC105906836,LOC106567173 coding downstream 195917 17349249 ~ 17354410 (+)
LOC122329248 LOC107671862,LOC107756420,LOC107697970,LOC101886435,LOC107594036,LOC108425513 coding downstream 209031 17362363 ~ 17402848 (+)
G158489 NA non-coding upstream 315815 16832106 ~ 16836166 (+)
LOC122329245 NA non-coding upstream 335364 16811847 ~ 16816617 (+)
G158482 NA non-coding upstream 426532 16725112 ~ 16725449 (+)
G158437 NA non-coding upstream 540940 16608825 ~ 16611041 (+)
G158434 NA non-coding upstream 596339 16555417 ~ 16555642 (+)
G158527 NA non-coding downstream 26099 17179431 ~ 17180457 (+)
G158542 NA non-coding downstream 136612 17289944 ~ 17291543 (+)
G158543 csrnp2,LOC107671888,LOC107598537,LOC107715040,LOC107594006,LOC107756414 non-coding downstream 140739 17294071 ~ 17296458 (+)
G158550 NA non-coding downstream 155381 17308713 ~ 17310792 (+)
G158569 NA non-coding downstream 205032 17358364 ~ 17405040 (+)
G158524 NA other upstream 69326 17082205 ~ 17082655 (+)
G158486 NA other upstream 419097 16731346 ~ 16732884 (+)
LOC122328551 atf7b,atf7a,LOC107711055,LOC107585125,LOC107740570,LOC107667392,LOC107673513,LOC107582698,LOC107681998,LOC107716199,LOC107745462,LOC107570410,LOC107563644,LOC107695816 other upstream 482333 16635446 ~ 16669648 (+)
G158446 atf7a,LOC107563644,LOC107570410,LOC107745462,LOC107681998 other upstream 487667 16621198 ~ 16664314 (+)
LOC122328571 kmt2d,LOC107681934,LOC107716211,LOC107695802,LOC107563643 other upstream 544573 16581970 ~ 16607408 (+)
si:ch211-148l7.4 LOC107715028,LOC107671835,LOC107593999,LOC107697967,LOC107706980 other downstream 269788 17423120 ~ 17426633 (+)
snrpg snrpg,LOC107671841,LOC107594056,LOC107598637,LOC107706979 other downstream 273401 17426733 ~ 17428031 (+)
camk2n1b camk2n1b,LOC107664141,LOC107714949,LOC107706982,LOC107563146,LOC107599136 other downstream 657737 17811069 ~ 17856534 (+)
G158789 march9,LOC107664138,LOC107593952,LOC107697857,LOC107714987,LOC107706970,LOC107599679,LOC105912704 other downstream 903782 18057114 ~ 18058917 (+)
fam110c LOC107714930,LOC107664105,LOC107593987 other downstream 1488162 18641494 ~ 18644692 (+)

Expression


Co-expression Network