G158543 (csrnp2,LOC107671888,LOC107598537,LOC107715040,LOC107594006,LOC107756414)


Basic Information

Item Value
gene id G158543
gene name csrnp2,LOC107671888,LOC107598537,LOC107715040,LOC107594006,LOC107756414
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 17294071 ~ 17296458 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU234793
TTCGATTTTAGTACTGGACTTAAAGGTtgagcttatatatatatatataagtgtcaGTGTCAAAAATATGTGAAGAATACGccagtaaaattgtaaaaaaaattgtaaaatgtgaagtaaaatgctatttctttcttctttttttccttttgaaatGTGACCTAGACATGTTTTCATGAGATTCACCTATAAAATGTCCGTAATCTTTAAAGGCTTGATGTGCAATTAATGTATGAACTCACtccttaaaaattaaaacacacctaaaaaacaaaaaaaaattaatgattgTAGATGACAATACTCACACACATTGTCCTCGCCCTAACAATACAAAGCggtggtaaataaataaacgtccACAAACTGGGACGGTAGGCTACAGCTTCAAACGGTGTCAGGTCAAGACTACGATAAATCAGTAAAGAACTGCTGTGCAAATGGCTTGCACATTCATTCATCCTCCTGATCCCCACTCAGCAAGTTCAAACGAATCAAGTTTTCAGCGTGCATACAGAGAACAAGCAGCTTTTTCACTCATCTTCATGCTAGCTCTTAGCAAAACACTATTACAGTACATGAAAACCAAGTATTTCCAGGATTGTTGGGTCTATTCACAGGAAGGATGCTACAAACAACACCCTCTTCTAAGATTAGCAACCCCTTCTCTTATCGTTAGCACTGAGTTAGCATTATCcatatgcatattactaatgtTGCATTCATGCCCTGGAAGAATTACCATAATTACAGGGTTCAGAGTGTTAGAAACCATTCAAGGCCTTCGGAAACGTTTGTAATTCTAACTTCAGAACTACTTAATTTTATAAAAGCTCCATTTCAAGGTTAAtgaggatattttttttttttgcagtaagcAACAAAGCTGTCCATAGATACATTTTGATGTTATGAACTTTGTCATAAAAACTGAGAATATGAACAGCTAAGAGTTGTGATCTTAAAATTGTGGTAATTCCAACAAGACATTAACATAGCATTAACATATACCTTTCTGACAGTGCCAATTAGTTGCTGGGGTGCAGTATCGGAAACTCTACACACTGTAAAGGCCATACAAAGGCGCTGAATAATCCTGAAAATGCTTGCTCCTCGACATAAAGGCCACTTTTTCCCCACTAGTATCAAGTAATAAACTGATACCAtactggaaaaacaaacacttgttGTCAGATCAGGATCTCTGcttttcttcagtttcttttttcattttttttttcataaattattctatttttttctttttaataacttattttacCACGGACAACCTACTTCAAACACAGTACATGCTTATCTCCAGCTAAATTGGATACAAACCCATGAAGGTAACTTGtttctttaacatttaataacattatgCAGTCTTGTAACATCGCACTGTGTGGAGTAGGCTCTCTTTGAATTTAATGACTAACTTGTGCAAAACATCTGCAAAGGTGATAGGCTCTACACTTCTGGAGGAAGTTGTACTGCCTTTTCATCCAGTGCCAGGCACGTCTCGAGGCATCCCCCATCATTTGAGGCCTGTTCTGGACAAAGATGTTCTTCTTCCCCATCCTTGAGAGGTGGAGGTACTTCGACAGACAAGCTCTTGGCCGAATCCTGCCCGCAGGTTTCTTGTTTTTGCCGGTCGCTCTCCTTATCTGGATCCCCACCTTCACTCACCACTTCCTCTACTTGCGCAGGAAGTGTCTCAAAGGCTGCTGTCTCTACATGATCTACCTGATAATAGAGGACAGAAGCAGGGTCTTTCAGCAGCCTCTGTTCGGTCTGTTCATCTGCATGGTTCTCTGTAATACACAGAAAGGTGGTACCTTCAGGAAAAGGCCCTTCTAGAAGGACTCCCTCAACACCTTCCATGCCCTCCATCCCTGCTTGGCCGGTGAGGGCACCCTGCAGGAGGCAAAGGGTTGGGTCAGTGGTTTGCGCCTCCTCGACCTGCTGCTCTTCTTGTTCCAGTCTCCTTTCCCGTTCCTCTGCACTTTGTAGGTGAAGCACGGCTGTTTCGTTCTCACGTTCCAGGCTGTCGCACTGCTCCTCTTGCAGCTCCTGAACACACTGGCTTTCCACCTCTACATCTGAGTCCAagggagaaagagacagagatggAGAAGAGACTAATTCTGTCTCTTCTCCACAATCCTCTCCAGACCTTACACCCAACAGGCTTCTCTTTTCCAGGTCAAGTTTCATGATAGTGTGAAGATAGTGAGTACGCACACGAAGAGGGTTGAACTCAATGCGGCCAGCTGTATTACCACAACCATCACGGGTGCAGCCACATGGGAAGGACATCCGG

Function

symbol description
csrnp2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus. Orthologous to human CSRNP2 (cysteine and serine rich nuclear protein 2).

NR:

description
PREDICTED: cysteine/serine-rich nuclear protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU234793 True 2323 lncRNA 0.41 2 17294071 17296458

Neighbor

gene id symbol gene type direction distance location
rapgef3 rapgef3,LOC107723737,LOC107671875,LOC107598495,LOC107697977,LOC107756413 coding upstream 79579 17180872 ~ 17214492 (+)
LOC122328573 NA coding upstream 131835 17155195 ~ 17162236 (+)
LOC122328394 asb8,LOC107745463,LOC107681993,LOC107570421,LOC107563629,LOC107695815 coding upstream 674368 16617169 ~ 16619703 (+)
LOC122329124 masp2,LOC107708846,LOC107571531 coding upstream 755050 16529872 ~ 16539021 (+)
LOC122328557 sst3,cort,LOC107586562,LOC107695747,LOC107716096 coding upstream 779167 16513107 ~ 16514904 (+)
dazap2 dazap2,LOC107715036,LOC107671873,LOC107756418,LOC107697974,LOC107594003,LOC107598568 coding downstream 36787 17333245 ~ 17338936 (+)
si:ch211-210c8.6 si:ch211-210c8.6,LOC107756419,LOC107598584,LOC105906836,LOC106567173 coding downstream 52791 17349249 ~ 17354410 (+)
LOC122329248 LOC107671862,LOC107756420,LOC107697970,LOC101886435,LOC107594036,LOC108425513 coding downstream 65905 17362363 ~ 17402848 (+)
cs cs,LOC107707042,LOC107715034,LOC107671863,LOC107697968 coding downstream 109000 17405458 ~ 17416655 (+)
LOC122328977 LOC107671833,LOC107715029,LOC107598604,LOC107707038,LOC107697965,LOC107593998 coding downstream 131999 17428457 ~ 17432713 (+)
G158542 NA non-coding upstream 2528 17289944 ~ 17291543 (+)
G158527 NA non-coding upstream 113614 17179431 ~ 17180457 (+)
LOC122328456 NA non-coding upstream 140739 17151981 ~ 17153332 (+)
G158489 NA non-coding upstream 457905 16832106 ~ 16836166 (+)
LOC122329245 NA non-coding upstream 477454 16811847 ~ 16816617 (+)
G158550 NA non-coding downstream 12255 17308713 ~ 17310792 (+)
G158569 NA non-coding downstream 61906 17358364 ~ 17405040 (+)
G158579 NA non-coding downstream 123568 17420026 ~ 17420643 (+)
G158573 NA non-coding downstream 124264 17420722 ~ 17422300 (+)
G158726 NA non-coding downstream 514127 17810585 ~ 17810812 (+)
G158523 NA other upstream 122232 17105498 ~ 17171839 (+)
G158524 NA other upstream 211416 17082205 ~ 17082655 (+)
G158486 NA other upstream 561187 16731346 ~ 16732884 (+)
LOC122328551 atf7b,atf7a,LOC107711055,LOC107585125,LOC107740570,LOC107667392,LOC107673513,LOC107582698,LOC107681998,LOC107716199,LOC107745462,LOC107570410,LOC107563644,LOC107695816 other upstream 624423 16635446 ~ 16669648 (+)
G158446 atf7a,LOC107563644,LOC107570410,LOC107745462,LOC107681998 other upstream 629757 16621198 ~ 16664314 (+)
si:ch211-148l7.4 LOC107715028,LOC107671835,LOC107593999,LOC107697967,LOC107706980 other downstream 126662 17423120 ~ 17426633 (+)
snrpg snrpg,LOC107671841,LOC107594056,LOC107598637,LOC107706979 other downstream 130275 17426733 ~ 17428031 (+)
camk2n1b camk2n1b,LOC107664141,LOC107714949,LOC107706982,LOC107563146,LOC107599136 other downstream 514611 17811069 ~ 17856534 (+)
G158789 march9,LOC107664138,LOC107593952,LOC107697857,LOC107714987,LOC107706970,LOC107599679,LOC105912704 other downstream 760656 18057114 ~ 18058917 (+)
fam110c LOC107714930,LOC107664105,LOC107593987 other downstream 1345036 18641494 ~ 18644692 (+)

Expression


Co-expression Network