snrpg (snrpg,LOC107671841,LOC107594056,LOC107598637,LOC107706979)


Basic Information

Item Value
gene id snrpg
gene name snrpg,LOC107671841,LOC107594056,LOC107598637,LOC107706979
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 17426733 ~ 17428031 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU234849
GAAAATCCCGCGACCCGGTACGTCACTTCCGCCACTGTTCATACATTGTTTGAAACGTGTTTCaaacgtttttgttttacaaaactaTTTGATCCGACCAAATAAACATGAGCAAAGCACACCCGCCAGAGCTGAAGAAgtTTATGGACAAGAAGCTTTCACTGAAGCTCAACGGTGGCCGTCACGTTCAGGGCATCTTGCGTGGTTTTGACCCCTTCATGAATCTGGTCGTTGATGACTGTATAGAAATGGCTCCTGGAGGACAAATGAACACCATTGGGATGGTGGTGATCAGAGGAAACAGTATAATCATGTTGGAGGCTCTTGAACGAGTATGAGGATGTCGTCCACTTTCTttccctgctttttttttttctttttttgtacccAGCAAATATAGAAAAGGCCATTTTCTCATGTCTTTTTACAACAAAGGCTTAATATTAACTCTGAAATCTTCGattgtgtttaaatattgttttataaacaccttccttttatttttatgtaccttCCTATGTCTGTAGAAATTTGTGTACACgattcatacatttttgtgaataaatggACTACGGTGTGATTAATC
>XM_043225428.1
GACTGGTTCAGAAAATCCCGCGACCCGGTACGTCACTTCCGCCACTGTTCATACATTGTTTGAAACGTGTTTCaaacgtttttgttttacaaaactaTTTGATCCGACCAAATAAACATGAGCAAAGCACACCCGCCAGAGCTGAAGAAgtTTATGGACAAGAAGCTTTCACTGAAGCTCAACGGTGGCCGTCACGTTCAGGGCATCTTGCGTGGTTTTGACCCCTTCATGAATCTGGTCGTTGATGACTGTATAGAAATGGCTCCTGGAGGACAAATGAACACCATTGGGATGGTGGTGATCAGAGGAAACAGTATAATCATGTTGGAGGCTCTTGAACGAGTATGAGGATGTCGTCCACTTTCTttccctgctttttttttttctttttttgtacccAGCAAATATAGAAAAGGCCATTTTCTCATGTCTTTTTACAACAAAGGCTTAATATTAACTCTGAAATCTTCGattgtgtttaaatattgttttataaacaccttccttttatttttatgtaccttCCTATGTCTGTAGAAATTTGTGTACACgattcatacatttttgtgaataaatggACTACGGTGTGATTAA

Function

symbol description
snrpg Predicted to contribute to RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within spliceosomal snRNP assembly. Predicted to be located in nucleus. Predicted to be part of SMN-Sm protein complex and nucleus. Predicted to be active in P granule. Is expressed in liver. Orthologous to several human genes including SNRPG (small nuclear ribonucleoprotein polypeptide G).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K11099 SNRPG, SMG; small nuclear ribonucleoprotein G

RNA

RNA id representative length rna type GC content exon number start site end site
TU234849 False 586 lncRNA 0.39 4 17426743 17428031
XM_043225428.1 True 594 mRNA 0.39 4 17426733 17428029

Neighbor

gene id symbol gene type direction distance location
cs cs,LOC107707042,LOC107715034,LOC107671863,LOC107697968 coding upstream 10078 17405458 ~ 17416655 (+)
LOC122329248 LOC107671862,LOC107756420,LOC107697970,LOC101886435,LOC107594036,LOC108425513 coding upstream 23885 17362363 ~ 17402848 (+)
si:ch211-210c8.6 si:ch211-210c8.6,LOC107756419,LOC107598584,LOC105906836,LOC106567173 coding upstream 72323 17349249 ~ 17354410 (+)
dazap2 dazap2,LOC107715036,LOC107671873,LOC107756418,LOC107697974,LOC107594003,LOC107598568 coding upstream 87797 17333245 ~ 17338936 (+)
rapgef3 rapgef3,LOC107723737,LOC107671875,LOC107598495,LOC107697977,LOC107756413 coding upstream 212241 17180872 ~ 17214492 (+)
LOC122328977 LOC107671833,LOC107715029,LOC107598604,LOC107707038,LOC107697965,LOC107593998 coding downstream 426 17428457 ~ 17432713 (+)
fam50a fam50a,LOC107707036,LOC107598596,LOC107671832,LOC107697964,LOC107715033 coding downstream 10486 17438517 ~ 17444127 (+)
si:ch211-207e14.4 LOC107707035,LOC107697962,LOC107598648,LOC107671899,LOC107594033 coding downstream 16491 17444522 ~ 17452097 (+)
sars1 sars,LOC107697960,LOC107671868 coding downstream 26424 17454455 ~ 17460470 (+)
chchd6a chchd6a,LOC107715026,LOC107671869,LOC107593996,LOC107697961,LOC107707034,LOC107598676 coding downstream 33231 17461262 ~ 17518098 (+)
G158573 NA non-coding upstream 4433 17420722 ~ 17422300 (+)
G158579 NA non-coding upstream 6090 17420026 ~ 17420643 (+)
G158569 NA non-coding upstream 21693 17358364 ~ 17405040 (+)
G158550 NA non-coding upstream 115941 17308713 ~ 17310792 (+)
G158543 csrnp2,LOC107671888,LOC107598537,LOC107715040,LOC107594006,LOC107756414 non-coding upstream 130275 17294071 ~ 17296458 (+)
G158726 NA non-coding downstream 382554 17810585 ~ 17810812 (+)
G158754 LOC107714950,LOC107664163,LOC107706981,LOC107563148,LOC107697872,LOC107599688 non-coding downstream 494539 17922570 ~ 17923679 (+)
G158775 NA non-coding downstream 516902 17944933 ~ 17945141 (+)
G158810 LOC107714990,LOC107593956,LOC107664165 non-coding downstream 737565 18165596 ~ 18173699 (+)
G158817 NA non-coding downstream 774145 18202176 ~ 18202492 (+)
si:ch211-148l7.4 LOC107715028,LOC107671835,LOC107593999,LOC107697967,LOC107706980 other upstream 100 17423120 ~ 17426633 (+)
G158523 NA other upstream 254894 17105498 ~ 17171839 (+)
G158524 NA other upstream 344078 17082205 ~ 17082655 (+)
G158486 NA other upstream 693849 16731346 ~ 16732884 (+)
LOC122328551 atf7b,atf7a,LOC107711055,LOC107585125,LOC107740570,LOC107667392,LOC107673513,LOC107582698,LOC107681998,LOC107716199,LOC107745462,LOC107570410,LOC107563644,LOC107695816 other upstream 757085 16635446 ~ 16669648 (+)
camk2n1b camk2n1b,LOC107664141,LOC107714949,LOC107706982,LOC107563146,LOC107599136 other downstream 383038 17811069 ~ 17856534 (+)
G158789 march9,LOC107664138,LOC107593952,LOC107697857,LOC107714987,LOC107706970,LOC107599679,LOC105912704 other downstream 629083 18057114 ~ 18058917 (+)
fam110c LOC107714930,LOC107664105,LOC107593987 other downstream 1213463 18641494 ~ 18644692 (+)
G159081 NA other downstream 1343919 18771950 ~ 18789618 (+)
LOC122328754 LOC107715022,LOC107593991,LOC107697954,LOC107664193,LOC564564,LOC107598698,LOC107707027,LOC108432721 other downstream 1371541 18799572 ~ 18814653 (+)

Expression


Co-expression Network