slc48a1a (slc48a1a,LOC107671836,LOC107598487,LOC107594008,LOC107756371,LOC107697869,LOC107757747)


Basic Information

Item Value
gene id slc48a1a
gene name slc48a1a,LOC107671836,LOC107598487,LOC107594008,LOC107756371,LOC107697869,LOC107757747
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 17176625 ~ 17184385 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU234864
GAATAAGCAGCGCTGCATTACATAATCTCTCATCGATGGTGTAATCTTTCTCTTCAGCTACTTGTCACAGCTTTACTGTGCTACTTTATACACCATCAATGGGTCCAAACAGGATCTACATCAGTGTGGGTTACGCCATGTTCGGCATGTCGGTGGGATTTTCGTCGTTTATCGTGTGGAATGTGGTTTATAAGCAGCCATGGACGGCGGCGATGGGCGGATTATCAGGAGTTCTGGCACTCTGGGCATTGGTCACCCACATTATGTACATTCAGGACTACTGGCGCACTTGGCTGAAGGGACTCAAGTTCTTCATGTTTGTTAGTTCGGTCTTCTCCCTCCTGGCTATTGCTGCTTTTGCCACCTTCATAGCTTTGGCTGTTATAGAAAAGCAGTCAATAACTGACCCAAAGAGCTTCTATCTATCGGCCGTGTGGAGCTTCATGACTCTCAAATGGGCCTTTCTTCTGGGCATGTACTCCTACCGCTACCGCCAGGAGTTTGCTGACATCAGCATCCTCAGTGACTTTTGATTGGCTCCTCCATCTGTAATAGATTTGTAGCTGCCAGTCGGTGGCTTCACCTGCCAATGCGgagatggaaggatggatggatctCCTTTTTAAAACCGTCTTACGGCCTCCTTGCTTTCAAAGAAAAGACTCAAATCTCAGCCCCTCCTTGCCACAGATCCAGGCCCTGGAGCAAGAAGTCAGTGAATGTCTGCGATCTgcctctttttgtcttttttgagtTAATTGGAGGTTTTACATCGACATCGGTCAAAGATGTGGCAGTTGTGTCGAAGGAAGTGGATACACTAGATTGTGGTCGCAGGTAGTTGTTACTTCACTCAGGGCAACTTCTCTCCAAATGTCAGATGTGAAAGGAAGGCTTTCCTTccctgtcagaaaaaaaagtgcaaaaatgtaCCTTCAGGGGTGCGACTGCTTGTCATTGGGCAGTAGACCTTGTCTCTACCCCTTTACAGGGGTGTCACATGCATTCTTAATTTAGAAGAACATACTCTAAAAGTTTTACTTTGAAGAGTGCTGTAATGACATGGTAcaatttttgtactttttttttttttttttaatgaatgggTGTACGATGAAGGATTAGCACAGCTTTATTGGTCTCAGCCAGCGATGGTGGAATCGACCTTTCAGATATAGATAGTGTTCTTTATTATTTGCCATATGTGATTTCTTTTGGCTGCGTTTGGAACTGCATACTAGCATTTTaaagttaagttaaaattagtttttaatttacgAAAGggtcataaatacagtaaacacagtaatatttttaatgaagttttCTGTTCAATGTATACTATGAtgcatatgaaatatgaaaatatgcacAGGACGGTCCCAGTGAAGTGCGCCTGGCTTTCCATTACCAACACGTTGAGCCATAATAATATCAGccctttttattatgttgactCCGACTGCTAAAAGCCATACATTATTACTCACTGAAATGTGACAATGTAGCATTCTAGGTTTATTGGTGCGTAATGCATTCTGTTTTGCATACTTCCTTTATATGCATAGCAAATCCTTTGCAGTGTGGGTAGTTTTTTCTTTCCGAATTTTACCATTGGTTCACTATCATTATGCAGTTCCTCTCTTTGCCACTAGTGGGGGGTGATTGAGCAACTGAATGAATGGCGCTCAGTCCTCAGATGTTTTTAGTTACGTATCAGCACtaaattgtattaaaaccaTGAGCTGaattcacaatatttttaaatgcttacgTTATCatgtgaaatgttatttctgGATAGTTTTTCTTCAAGATATTCTATCCGATAAAACAAGcgtttatgttttaaagtgtatgttttgtttgtttgagggACGAGCGCtccgtctctgtgtgtgttgagCGGATATTAAGTGTGGTCTGGTTTGTTGTCATTTTCGGATGTTGAAGGATCAGTCATTTATTCACCGTCATGTCATTTAAATCCCAATTTTTATAGTCAAAAAACCCCTCATATAATAACTTTATAAGAGAAACAgacataattaaatgaataaaaatgaatacatttcgGAAGACTTTTGAAAAACCATTCATTTTTAGTAGCCGAAAAGTAACAAACGCATTACTTTGCACTAGATTGCATAGAAATGTTGTAAGTGTTTTAATGAGTAGAAGGGGTCACCTTCAAAAACTTTTACCAACATTTCACTTTATAGCATGTGTGTAAAGCAGTTTTGTACCATAATGCTTTTAGCCAGCTATATGCAGATTCATCACTGGTTACAGTTACACTACCTGCAGCTTAAAACTTTGCACAGTATGAGTTACATTGGGACATTTGAAGA
>XM_043225100.1
TTGTTGCCATGGTGATACCGGGGAGCTCTTCCGGGTCGTGCAGTCGTGTTTACGAATAAGCAGCGCTGCATTACATAATCTCTCATCGATGGTGTAATCTTTCTCTTCAGCTACTTGTCACAGCTTTACTGTGCTACTTTATACACCATCAATGGGTCCAAACAGGATCTACATCAGTGTGGGTTACGCCATGTTCGGCATGTCGGTGGGATTTTCGTCGTTTATCGTGTGGAATGTGGTTTATAAGCAGCCATGGACGGCGGCGATGGGCGGATTATCAGGAGTTCTGGCACTCTGGGCATTGGTCACCCACATTATGTACATTCAGGACTACTGGCGCACTTGGCTGAAGGGACTCAAGTTCTTCATGTTTGTTAGTTCGGTCTTCTCCCTCCTGGCTATTGCTGCTTTTGCCACCTTCATAGCTTTGGCTGTTATAGAAAAGCAGTCAATAACTGACCCAAAGAGCTTCTATCTATCGGCCGTGTGGAGCTTCATGACTCTCAAATGGGCCTTTCTTCTGGGCATGTACTCCTACCGCTACCGCCAGGAGTTTGCTGACATCAGCATCCTCAGTGACTTTTGATTGGCTCCTCCATCTGTAATAGATTTGTAGCTGCCAGTCGGTGGCTTCACCTGCCAATGCGgagatggaaggatggatggatctCCTTTTTAAAACCGTCTTACGGCCTCCTTGCTTTCAAAGAAAAGACTCAAATCTCAGCCCCTCCTTGCCACAGATCCAGGCCCTGGAGCAAGAAGTCAGTGAATGTCTGCGATCTgcctctttttgtcttttttgagtTAATTGGAGGTTTTACATCGACATCGGTCAAAGATGTGGCAGTTGTGTCGAAGGAAGTGGATACACTAGATTGTGGTCGCAGGTAGTTGTTACTTCACTCAGGGCAACTTCTCTCCAAATGTCAGATGTGAAAGGAAGGCTTTCCTTccctgtcagaaaaaaaagtgcaaaaatgtaCCTTCAGGGGTGCGACTGCTTGTCATTGGGCAGTAGACCTTGTCTCTACCCCTTTACAGGGGTGTCACATGCATTCTTAATTTAGAAGAACATACTCTAAAAGTTTTACTTTGAAGAGTGCTGTAATGACATGGTAcaatttttgtactttttttttttttttttaatgaatgggTGTACGATGAAGGATTAGCACAGCTTTATTGGTCTCAGCCAGCGATGGTGGAATCGACCTTTCAGATATAGATAGTGTTCTTTATTATTTGCCATATGTGATTTCTTTTGGCTGCGTTTGGAACTGCATACTAGCATTTTaaagttaagttaaaattagtttttaatttacgAAAGggtcataaatacagtaaacacagtaatatttttaatgaagttttCTGTTCAATGTATACTATGAtgcatatgaaatatgaaaatatgcacAGGACGGTCCCAGTGAAGTGCGCCTGGCTTTCCATTACCAACACGTTGAGCCATAATAATATCAGccctttttattatgttgactCCGACTGCTAAAAGCCATACATTATTACTCACTGAAATGTGACAATGTAGCATTCTAGGTTTATTGGTGCGTAATGCATTCTGTTTTGCATACTTCCTTTATATGCATAGCAAATCCTTTGCAGTGTGGGTAGTTTTTTCTTTCCGAATTTTACCATTGGTTCACTATCATTATGCAGTTCCTCTCTTTGCCACTAGTGGGGGGTGATTGAGCAACTGAATGAATGGCGCTCAGTCCTCAGATGTTTTTAGTTACGTATCAGCACtaaattgtattaaaaccaTGAGCTGaattcacaatatttttaaatgcttacgTTATCatgtgaaatgttatttctgGATAGTTTTTCTTCAAGATATTCTATCCGATAAAACAAGcgtttatgttttaaagtgtatgttttgtttgtttgagggACGAGCGCtccgtctctgtgtgtgttgagCGGATATTAAGTGTGGTCTGGTTTGTTGTCATTTTCGGATGTTGAAGGATCAGTCATTTATTCACCGTCATGTCATTTAAATCCCAATTTTTATAGTCAAAAAACCCCTCATATAATAACTTTATAAGAGAAACAgacataattaaatgaataaaaatgaatacatttcgGAAGACTTTTGAAAAACCATTCATTTTTAGTAGCCGAAAAGTAACAAACGCATTACTTTGCACTAGATTGCATAGAAATGTTGTAAGTGTTTTAATGAGTAGAAGGGGTCACCTTCAAAAACTTTTACCAACATTTCACTTTATAGCATGTGTGTAAAGCAGTTTTGTACCATAATGCTTTTAGCCAGCTATATGCAGATTCATCACTGGTTACAGTTACACTACCTGCAGCTTAAAACTTTGCACAGTATGAGTTACATTGGGACATTTGAAGAAGATTAAAGTACTGTTGTTTAAATCTA
>XM_043225101.1
GAAGATCTGTTTAAAGAACGAAAGCATTCTGGCATGTATATCCTCCATGTACGCCGCGCTCCACAGCAGCTAATGATACAAAGCCTAAGGCCCAGCGATGCAAAGGAGAGAGTTCTGGCACTCTGGGCATTGGTCACCCACATTATGTACATTCAGGACTACTGGCGCACTTGGCTGAAGGGACTCAAGTTCTTCATGTTTGTTAGTTCGGTCTTCTCCCTCCTGGCTATTGCTGCTTTTGCCACCTTCATAGCTTTGGCTGTTATAGAAAAGCAGTCAATAACTGACCCAAAGAGCTTCTATCTATCGGCCGTGTGGAGCTTCATGACTCTCAAATGGGCCTTTCTTCTGGGCATGTACTCCTACCGCTACCGCCAGGAGTTTGCTGACATCAGCATCCTCAGTGACTTTTGATTGGCTCCTCCATCTGTAATAGATTTGTAGCTGCCAGTCGGTGGCTTCACCTGCCAATGCGgagatggaaggatggatggatctCCTTTTTAAAACCGTCTTACGGCCTCCTTGCTTTCAAAGAAAAGACTCAAATCTCAGCCCCTCCTTGCCACAGATCCAGGCCCTGGAGCAAGAAGTCAGTGAATGTCTGCGATCTgcctctttttgtcttttttgagtTAATTGGAGGTTTTACATCGACATCGGTCAAAGATGTGGCAGTTGTGTCGAAGGAAGTGGATACACTAGATTGTGGTCGCAGGTAGTTGTTACTTCACTCAGGGCAACTTCTCTCCAAATGTCAGATGTGAAAGGAAGGCTTTCCTTccctgtcagaaaaaaaagtgcaaaaatgtaCCTTCAGGGGTGCGACTGCTTGTCATTGGGCAGTAGACCTTGTCTCTACCCCTTTACAGGGGTGTCACATGCATTCTTAATTTAGAAGAACATACTCTAAAAGTTTTACTTTGAAGAGTGCTGTAATGACATGGTAcaatttttgtactttttttttttttttttaatgaatgggTGTACGATGAAGGATTAGCACAGCTTTATTGGTCTCAGCCAGCGATGGTGGAATCGACCTTTCAGATATAGATAGTGTTCTTTATTATTTGCCATATGTGATTTCTTTTGGCTGCGTTTGGAACTGCATACTAGCATTTTaaagttaagttaaaattagtttttaatttacgAAAGggtcataaatacagtaaacacagtaatatttttaatgaagttttCTGTTCAATGTATACTATGAtgcatatgaaatatgaaaatatgcacAGGACGGTCCCAGTGAAGTGCGCCTGGCTTTCCATTACCAACACGTTGAGCCATAATAATATCAGccctttttattatgttgactCCGACTGCTAAAAGCCATACATTATTACTCACTGAAATGTGACAATGTAGCATTCTAGGTTTATTGGTGCGTAATGCATTCTGTTTTGCATACTTCCTTTATATGCATAGCAAATCCTTTGCAGTGTGGGTAGTTTTTTCTTTCCGAATTTTACCATTGGTTCACTATCATTATGCAGTTCCTCTCTTTGCCACTAGTGGGGGGTGATTGAGCAACTGAATGAATGGCGCTCAGTCCTCAGATGTTTTTAGTTACGTATCAGCACtaaattgtattaaaaccaTGAGCTGaattcacaatatttttaaatgcttacgTTATCatgtgaaatgttatttctgGATAGTTTTTCTTCAAGATATTCTATCCGATAAAACAAGcgtttatgttttaaagtgtatgttttgtttgtttgagggACGAGCGCtccgtctctgtgtgtgttgagCGGATATTAAGTGTGGTCTGGTTTGTTGTCATTTTCGGATGTTGAAGGATCAGTCATTTATTCACCGTCATGTCATTTAAATCCCAATTTTTATAGTCAAAAAACCCCTCATATAATAACTTTATAAGAGAAACAgacataattaaatgaataaaaatgaatacatttcgGAAGACTTTTGAAAAACCATTCATTTTTAGTAGCCGAAAAGTAACAAACGCATTACTTTGCACTAGATTGCATAGAAATGTTGTAAGTGTTTTAATGAGTAGAAGGGGTCACCTTCAAAAACTTTTACCAACATTTCACTTTATAGCATGTGTGTAAAGCAGTTTTGTACCATAATGCTTTTAGCCAGCTATATGCAGATTCATCACTGGTTACAGTTACACTACCTGCAGCTTAAAACTTTGCACAGTATGAGTTACATTGGGACATTTGAAGAAGATTAAAGTACTGTTGTTTAAATCTA

Function

symbol description
slc48a1a Enables heme transmembrane transporter activity. Predicted to be involved in heme transport. Predicted to be located in endosome membrane and lysosome. Predicted to be integral component of membrane. Predicted to be active in lysosomal membrane and plasma membrane. Is expressed in several structures, including blood; central nervous system; heart; liver; and pleuroperitoneal region. Orthologous to human SLC48A1 (solute carrier family 48 member 1).

NR:

description
heme transporter hrg1-B

GO:

id name namespace
GO:0015886 heme transport biological_process
GO:0005765 lysosomal membrane cellular_component
GO:0010008 endosome membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015232 heme transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU234864 False 2351 TUCP 0.40 3 17176652 17179779
XM_043225100.1 True 2431 mRNA 0.40 3 17176625 17179832
XM_043225101.1 False 2259 mRNA 0.39 3 17176625 17184385

Neighbor

gene id symbol gene type direction distance location
hrct1 chia,LOC107671898,LOC107594041,LOC107756356 coding downstream 136 17171113 ~ 17176489 (-)
plxna2 plxna2,LOC107594012,LOC108425528 coding downstream 169339 16832085 ~ 17007286 (-)
LOC122329053 neurog1,LOC107598364,LOC107741101,LOC107664747,LOC107710304,LOC107662038,LOC107563607 coding downstream 494937 16680306 ~ 16681688 (-)
LOC122329052 LOC107716220,LOC107695793,LOC107586565,LOC107683357,LOC107571777,LOC107708795 coding downstream 499258 16674237 ~ 16677367 (-)
LOC122328572 acvr1ba,LOC107708859,LOC107570552,LOC107681940,LOC107716207,LOC107563637,LOC107695803 coding downstream 560286 16609478 ~ 16616339 (-)
itga5 itga5,LOC107671874,LOC107697976,LOC107594039 coding upstream 30214 17214599 ~ 17258164 (-)
csrnp2 csrnp2,LOC107671888,LOC107715040,LOC107594006,LOC107598537,LOC107756414 coding upstream 109793 17294178 ~ 17302565 (-)
tfcp2 tfcp2,LOC107671887,LOC107715039,LOC107756415,LOC106572516 coding upstream 118826 17303211 ~ 17315390 (-)
pou6f1 pou6f1,LOC107671889,LOC107715037,LOC107598516,LOC107756417,LOC107697973 coding upstream 132243 17316628 ~ 17330887 (-)
bin2a LOC107671903,LOC107715035,LOC107594002,LOC107697868,LOC107598577,LOC107756358 coding upstream 159717 17344102 ~ 17350948 (-)
G158587 NA non-coding downstream 93941 17082207 ~ 17082684 (-)
G158484 NA non-coding downstream 448282 16728101 ~ 16728343 (-)
G158483 NA non-coding downstream 448910 16727438 ~ 16727715 (-)
G158481 NA non-coding downstream 452222 16723931 ~ 16724403 (-)
G158462 NA non-coding downstream 568665 16607461 ~ 16607960 (-)
G158605 NA non-coding upstream 105586 17289971 ~ 17291543 (-)
G158608 dazap2,LOC107715036,LOC107594003,LOC107671873,LOC107756418,LOC107598568 non-coding upstream 126943 17311328 ~ 17338919 (-)
G158628 NA non-coding upstream 198957 17383342 ~ 17386554 (-)
G158632 NA non-coding upstream 209636 17394021 ~ 17395422 (-)
G158706 LOC107599375,LOC107715025,LOC107671876,LOC107594031,LOC104946192 non-coding upstream 562145 17746530 ~ 17748502 (-)
G158336 LOC107716221,LOC107570608,LOC107586536,LOC106567035 other downstream 817920 16355369 ~ 16358705 (-)
tac3a LOC107708854,LOC107571761,LOC107681951,LOC107586540,LOC107695797 other downstream 933230 16240810 ~ 16243395 (-)
G158288 LOC107708856,LOC107570569,LOC107716212,LOC107681953,LOC107695729 other downstream 1006791 16143833 ~ 16169834 (-)
G158231 NA other downstream 1167710 16008106 ~ 16008915 (-)
LOC122329227 NA other downstream 1459375 15621942 ~ 15717250 (-)
G158609 NA other upstream 154882 17339267 ~ 17343385 (-)
coq10a si:dkey-190g6.2,LOC107671896,LOC107715030,LOC107598614,LOC107697969,LOC102210977,LOC108425511,LOC102797363 other upstream 229318 17413703 ~ 17422517 (-)
march9 march9,LOC107593952,LOC107664138,LOC107714987,LOC107706970,LOC107599679,LOC107697857,LOC107088728,LOC108433385,LOC103130462,LOC105930772 other upstream 861541 18045926 ~ 18058739 (-)
hnrnpa1b hnrnpa1b,LOC107664187,LOC107714994,LOC107707002 other upstream 1047258 18231643 ~ 18235536 (-)
hoxc1a LOC107598919,LOC107707004,LOC107697929,LOC107594049,LOC107664160,LOC107714959 other upstream 1111661 18296046 ~ 18302575 (-)

Expression


Co-expression Network