G158810 (LOC107714990,LOC107593956,LOC107664165)


Basic Information

Item Value
gene id G158810
gene name LOC107714990,LOC107593956,LOC107664165
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18165596 ~ 18173699 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU235149
TTGTGAAAGGTCTCGCCTTTCTCAAACATCATCTTCAGACTGTTGAGAGGCACTGTGGGCTTTTCGATGGGCATGTCTCTCTGCGTCCACTTCTCCATCTCCTGGTCGCTGTCGCTCAACAACTGGGTCTCTGTGCCGTCAACAAGCTGGCCGTCTGTAGACTCCGGAGAGGTGTTAACAGCGGGATATGAAGGCTGTCGCTGATGGTTCTCCTGCTGTCTGGAGTGTGTTTTGGGTTCTGGAGATGGAGGCGTTTCAGCTGGTTGTTCCCAGAGCTGCTTTAGGACACTCAGATTGCCGTTGCGCGAGGAAGGAGTCGACTTCTCCGACTTTTTTCTTGTCTGAACTTGTTTCTTCTGCTGCCTTCTG
>TU235151
ttaaaaattaaactgcaGCTGTAACCCCTTCTGATTTCATAATGTGACATCTGACTTAAACCggatattcattaaaaatgaaacgaaTGGGAATTGACTGCATCATGAGAAGCAGGAGGACGATTGGAGTCAGGTtggggaaataaataaaatatggaaGGGATTCATGATGTCATCCAAAAAAGAAAGGCAGGTGTGGGGCAAGTTGTTTGATAAATGAttatgaagacaaaaaaaaatgtgtatgtacacaataaggcCAGGATCATAAGCAGATAGGGTCAGTTGTCAGTTCTCACCACATCAGGAGACACTGGCGGCACATTTTCCTTCTGCTTCACACTGTGACTGCGGACTTCATTGTCTGCTGGTTCACTCTGCCAGATCCAGGAACACAAAAAGGGAAAAGGTTATCTTTGTGCATGTGCtcctttaaaggaacagttcgcaCAAAACTCATTATCCTCCTGAAGGCATTCCAATCCTAAACTTTAGGATGTAACACAAAAAGAtaaccttttaaaatgattgcGTTTTGCTATTTTCCCATGGAAATGCAAAATGAAGACTGAAATCATTAAAAGATCCCATAAAATAGTCTGTGTGGCCCTTGACTACTTTAACTAACTAACTTCTAGAAAAGCCGGCTAAAATTTGTCATTCTCTGACAATcctgaaatctgaataaaatagATGAGTCCAATTcatacattaattattaagaTGGGTTTTATGAACAGATTCAGCGTtcctgttcatttttaattggaaaaagcatgaaaaaaagcaCTTAAGAAAGTCATtaatacgggtttggaacaacatgcaCACATGATGACAGACTTCTCAATTtgggttgaactatcccttcaaaaCAGATGCAAATAGAGTCATGTCAGCAGAACGACTGAACATTTGCATGTGATGAAATCATACGGAGCGATAGTAACCAAGGGAGTGTTTATGATGAAGTGGGGTGGAGGGGGTTGTCACTCACAGTGGGGGAGGAAGGGAAATCGTGCTTGGTCACAGCTGCCTGGTACATGGCCATTCGGTCCCTAAGAGGGGCACTGTGGGCTTTTCGATGGGCATGTCTCTCTGCGTCCACTTCTCCATCTCCTGGTCGCTGTCGCTCAACAACTGGGTCTCTGTGCCGTCAACAAGCTGGCCGTCTGTAGACTCCGGAGAGGTGTTAACAGCGGGATATGAAGGCTGTCGCTGATGGTTCTCCTGCTGTCTGGAGTGTGTTTTGGGTTCTGGAGATGGAGGCGTTTCAGCTGGTTGTTCCCAGAGCTGCTTTAGGACACTCAGATTGCCGTTGCGCGAGGAAGGAGTCGACTTCTCCGACTGTAAAGAACAAAGAGACTGTCAGTAGAGCGTTCACTCCTGGGGTTTCTCAACTTTTAAACTCTCTTTCTTGACAGAAGACAATCCAGAGTCTGACTGTACTGCGCTATTACTATCGaaactgaaatacaaatttAAGTAACAGTATATACAGATTTAGCCATTTCAGTCTTAAGTTTTAATTGAgacaggtttaaaaaaatactaataaac

Function

NR:

description
PREDICTED: LIM domain and actin-binding protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU235149 False 369 lncRNA 0.52 2 18171698 18173699
TU235151 True 1560 lncRNA 0.42 2 18165596 18172239

Neighbor

gene id symbol gene type direction distance location
spryd3 spryd3,LOC107714925,LOC107664113 coding upstream 3864 18123569 ~ 18161732 (+)
LOC122329029 zbtb39,LOC107664103,LOC107714954,LOC107697919,LOC107706990,LOC107579784 coding upstream 63482 18095612 ~ 18102114 (+)
agap2 agap2,LOC107664212,LOC107593954,LOC107697918,LOC107599465 coding upstream 71920 18073485 ~ 18093676 (+)
hipk1a hipk1a,LOC107697916,LOC107664210,LOC107599082 coding upstream 122108 18025464 ~ 18043488 (+)
ube2j2 ube2j2,LOC107706988,LOC107599097,LOC107664234,LOC107697915,LOC107593951 coding upstream 140897 18019331 ~ 18024699 (+)
zgc:174906 LOC107714991,LOC107664166,LOC107593958,LOC107697924,LOC107706998,LOC107599005 coding downstream 5404 18179103 ~ 18183697 (+)
csad csad,LOC107664139,LOC107706996,LOC107697858,LOC107599458 coding downstream 10143 18183842 ~ 18190376 (+)
znf740b znf740,znf740b,LOC107714993,LOC107664257,LOC107599665,LOC107706997,LOC107697859 coding downstream 17532 18191231 ~ 18215470 (+)
nfe2 LOC107593960,LOC107714957,LOC107664150,LOC107707001,LOC107697927,LOC107598932 coding downstream 41397 18215096 ~ 18231890 (+)
cbx5 cbx5,LOC107714996,LOC107664188,LOC103047453,LOC107697930 coding downstream 61989 18235688 ~ 18243703 (+)
G158775 NA non-coding upstream 220455 17944933 ~ 17945141 (+)
G158754 LOC107714950,LOC107664163,LOC107706981,LOC107563148,LOC107697872,LOC107599688 non-coding upstream 241917 17922570 ~ 17923679 (+)
G158726 NA non-coding upstream 354784 17810585 ~ 17810812 (+)
G158573 NA non-coding upstream 743296 17420722 ~ 17422300 (+)
G158579 NA non-coding upstream 744953 17420026 ~ 17420643 (+)
G158817 NA non-coding downstream 28477 18202176 ~ 18202492 (+)
G158818 NA non-coding downstream 30740 18204439 ~ 18204707 (+)
G158821 NA non-coding downstream 46294 18219993 ~ 18220332 (+)
G158822 NA non-coding downstream 71766 18245465 ~ 18246812 (+)
LOC122329094 NA non-coding downstream 76892 18250591 ~ 18271927 (+)
G158789 march9,LOC107664138,LOC107593952,LOC107697857,LOC107714987,LOC107706970,LOC107599679,LOC105912704 other upstream 106679 18057114 ~ 18058917 (+)
camk2n1b camk2n1b,LOC107664141,LOC107714949,LOC107706982,LOC107563146,LOC107599136 other upstream 309062 17811069 ~ 17856534 (+)
snrpg snrpg,LOC107671841,LOC107594056,LOC107598637,LOC107706979 other upstream 737565 17426733 ~ 17428031 (+)
si:ch211-148l7.4 LOC107715028,LOC107671835,LOC107593999,LOC107697967,LOC107706980 other upstream 738963 17423120 ~ 17426633 (+)
G158523 NA other upstream 993757 17105498 ~ 17171839 (+)
fam110c LOC107714930,LOC107664105,LOC107593987 other downstream 467795 18641494 ~ 18644692 (+)
G159081 NA other downstream 598251 18771950 ~ 18789618 (+)
LOC122328754 LOC107715022,LOC107593991,LOC107697954,LOC107664193,LOC564564,LOC107598698,LOC107707027,LOC108432721 other downstream 625873 18799572 ~ 18814653 (+)

Expression


Co-expression Network