G158830 (hoxc8,LOC107714926,LOC107664222,LOC103032829,LOC107593970)


Basic Information

Item Value
gene id G158830
gene name hoxc8,LOC107714926,LOC107664222,LOC103032829,LOC107593970
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18296006 ~ 18356534 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU235174
aaaaaaaaaaaaaaaaacgttttttttctttgggcAGGTTTTAGGGTGCTTTTGTATAGAGGGGGATTTTCTCACTTTTTGACCCAactgtttgtaataaaattggCGCGTCTTCTCTTTCATTGCCCATTCGCGAGACCTCTTCGATATCTGCCATATAACCATAAAAAAAGACCATAAAATCACTCCTTgctttcctctttctcttccGTTTCCTTGTCTTCTCCTTCCTCCACCTCGCCGTCCTCGTTGCCCTCTTCTTCGGCCTCCGCCTCAGCCTCTCCTCTCTGGCCCGGAAATTTGTCtttgttattttcctttttccacTTCATTCGGCGATTCTGAAACCAGATCTTCACCTGCCGTTCGGTTAAGCTCAGCGCGTGGGACACTTCAATACGGCGCTTGCGCGTGAGGTACGGGTTGAAGAGGAACTCTTTCTCCAGCTCGAGAGTCTGGTAACGGCTGTACGTCTGCCTTCCGTTGCGTCTCCCTGGAGCTTTGGAGTGAAACAGAAATATCTGTCAATCGCACGTCTTCGTCGCTTCTTTCTCTTCACATTTACACATTCTGGGATGCGGTCACAAAAACATCAGCAGTAGCTACGCTTGTTCGCAAGCGCACGCAAAATAACTTACAATTTGTTTGTAATGGAATTGTCACGAagtgcaattaatttttttattcgaACTGTAGAAAAA

Function

symbol description
hoxc8 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including anterior/posterior pattern specification; negative regulation of transcription by RNA polymerase II; and skeletal system morphogenesis. Located in microtubule cytoskeleton and nucleoplasm.

NR:

description
PREDICTED: homeobox protein Hox-C8a-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU235174 True 701 lncRNA 0.45 2 18296006 18356534

Neighbor

gene id symbol gene type direction distance location
cbx5 cbx5,LOC107714996,LOC107664188,LOC103047453,LOC107697930 coding upstream 52303 18235688 ~ 18243703 (+)
nfe2 LOC107593960,LOC107714957,LOC107664150,LOC107707001,LOC107697927,LOC107598932 coding upstream 64116 18215096 ~ 18231890 (+)
znf740b znf740,znf740b,LOC107714993,LOC107664257,LOC107599665,LOC107706997,LOC107697859 coding upstream 80536 18191231 ~ 18215470 (+)
csad csad,LOC107664139,LOC107706996,LOC107697858,LOC107599458 coding upstream 105630 18183842 ~ 18190376 (+)
zgc:174906 LOC107714991,LOC107664166,LOC107593958,LOC107697924,LOC107706998,LOC107599005 coding upstream 112309 18179103 ~ 18183697 (+)
calcoco1a calcoco1a,LOC107697941,LOC107593974,LOC107598830,LOC107664191 coding downstream 80525 18437059 ~ 18451886 (+)
nr1d4a nr1d4a,LOC107715006,LOC107707011,LOC107697943,LOC107593977,LOC107664228,LOC107598823 coding downstream 160070 18516604 ~ 18531502 (+)
mfsd5 mfsd5,LOC107594050,LOC107664134,LOC107599659,LOC107697860,LOC107599644,LOC107706975 coding downstream 176383 18532917 ~ 18535094 (+)
jph2 jph2,LOC107707015,LOC107715007,LOC107593978,LOC107697945,LOC107598797,LOC107664110 coding downstream 190695 18547229 ~ 18563142 (+)
LOC122328644 tuba1c,LOC108255233,LOC103148207,LOC102311436,LOC106920718 coding downstream 218664 18575198 ~ 18578740 (+)
G158828 NA non-coding upstream 22514 18273226 ~ 18273492 (+)
G158827 NA non-coding upstream 23163 18272329 ~ 18272843 (+)
LOC122329094 NA non-coding upstream 24079 18250591 ~ 18271927 (+)
G158822 NA non-coding upstream 49194 18245465 ~ 18246812 (+)
G158821 NA non-coding upstream 75674 18219993 ~ 18220332 (+)
G158880 NA non-coding downstream 188376 18544910 ~ 18545490 (+)
G158866 LOC107714908,LOC108433416,LOC107659949 non-coding downstream 208742 18565276 ~ 18569950 (+)
G159002 NA non-coding downstream 244368 18600902 ~ 18601176 (+)
LOC122329080 NA non-coding downstream 265292 18621826 ~ 18623979 (+)
G159018 si:ch211-225h24.2,LOC107715017,LOC107594029,LOC107664242,LOC107697952,LOC107707023,LOC107598767 non-coding downstream 296862 18653396 ~ 18655822 (+)
G158789 march9,LOC107664138,LOC107593952,LOC107697857,LOC107714987,LOC107706970,LOC107599679,LOC105912704 other upstream 237089 18057114 ~ 18058917 (+)
camk2n1b camk2n1b,LOC107664141,LOC107714949,LOC107706982,LOC107563146,LOC107599136 other upstream 439472 17811069 ~ 17856534 (+)
snrpg snrpg,LOC107671841,LOC107594056,LOC107598637,LOC107706979 other upstream 867975 17426733 ~ 17428031 (+)
si:ch211-148l7.4 LOC107715028,LOC107671835,LOC107593999,LOC107697967,LOC107706980 other upstream 869373 17423120 ~ 17426633 (+)
G158523 NA other upstream 1124167 17105498 ~ 17171839 (+)
fam110c LOC107714930,LOC107664105,LOC107593987 other downstream 284960 18641494 ~ 18644692 (+)
G159081 NA other downstream 415416 18771950 ~ 18789618 (+)
LOC122328754 LOC107715022,LOC107593991,LOC107697954,LOC107664193,LOC564564,LOC107598698,LOC107707027,LOC108432721 other downstream 443038 18799572 ~ 18814653 (+)

Expression


Co-expression Network