G158887


Basic Information

Item Value
gene id G158887
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 17999833 ~ 18001690 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU235252
GTTACTGACAGCTGAAGCAAGAAGTTTCTCACTCAAGCCGAGGAGAGCAGCACTGGGACGACTGAAATCCCCAGACAACACTGTCATGTAAATGTGCAGTCTGCCCACTAGATCAGCACGTTTCCAGGCAACCTAGTAAGAGCCGACTAGACTGCGTGATTGTGAGCAAAACACTCCTGTGCGCTCGGAGCGTGAGGCAGGAGTATTCAGAAGCTCTCTACGGTCACTGACTTGCCTCTGACTAATGAGAGAACCGAATCTGACCTAATTCAATTATGAAACCCGACTGAGCCAACGCGTTTACCGTGGCTGGTCACGGGACACCGCAGACCTTTCTTTTGGTGTATCGGATTTCGTCTTACCTGTGAATGCCGGAGCACTCGATGCAGAGCAGGACGCCCAGATTGATGCTGGCCCAGCGCGGGTCGGCCTGACCACAGTCGCAGCACTGCTGGTTCCCCGGCAGACACAGGATGCGCTGCAGGATGCTCTCGCCCCTGCCGCTGCGCTCTCGGCCCTCATTGGCTGAGTCTATACTGCTGATGGAGGGAGAAGCGGTCCGGTCCAAAC

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0031497 chromatin assembly biological_process
GO:0048468 cell development biological_process
GO:0006323 DNA packaging biological_process
GO:0006325 chromatin organization biological_process
GO:0022607 cellular component assembly biological_process
GO:0006333 chromatin assembly or disassembly biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0006334 nucleosome assembly biological_process
GO:0071824 protein-DNA complex subunit organization biological_process
GO:0065004 protein-DNA complex assembly biological_process
GO:0034728 nucleosome organization biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0071103 DNA conformation change biological_process
GO:0006996 organelle organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0070925 organelle assembly biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0016043 cellular component organization biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU235252 True 570 lncRNA 0.56 2 17999833 18001690

Neighbor

gene id symbol gene type direction distance location
LOC122329235 LOC107714952,LOC107664261,LOC107594045,LOC107599127,LOC107706987,LOC107697913 coding downstream 62254 17935574 ~ 17937579 (-)
LOC122329192 cptp,LOC107706969,LOC107697856,LOC107664144,LOC107599683,LOC107594044 coding downstream 73629 17924639 ~ 17926204 (-)
ubxn10 LOC107714950,LOC107664163,LOC107706981,LOC107563148,LOC107697872,LOC107599688 coding downstream 75330 17922587 ~ 17924503 (-)
vwa5b1 vwa5b1,LOC107706959,LOC107714920,LOC107664114,LOC107563127 coding downstream 85296 17879067 ~ 17914537 (-)
fam43b fam43b,LOC107563144,LOC107714947,LOC107664143,LOC107697855,LOC107577211 coding downstream 162861 17834843 ~ 17836972 (-)
tspan31 tspan31,tsn31,LOC107599072,LOC107593953 coding upstream 63580 18065270 ~ 18070963 (-)
gpr182 gpr182,LOC107664254,LOC107697920,LOC107593955,LOC107706991,LOC107599064 coding upstream 100621 18102311 ~ 18105120 (-)
pip4k2ca pip4k2ca,LOC107714989,LOC107598997,LOC107664235,LOC107697923,LOC107593957 coding upstream 106195 18107885 ~ 18116326 (-)
igfbp6b igfbp6b,LOC107714992,LOC107664167,LOC107593959,LOC107697925,LOC107599019,LOC105912701 coding upstream 118605 18120295 ~ 18123704 (-)
lima1a LOC107714990,LOC107664165,LOC107593956,LOC107706995,LOC107697921 coding upstream 160770 18162460 ~ 18177490 (-)
G158774 NA non-coding downstream 55673 17943925 ~ 17944160 (-)
LOC122328377 NA non-coding downstream 155731 17799842 ~ 17844102 (-)
G158706 LOC107599375,LOC107715025,LOC107671876,LOC107594031,LOC104946192 non-coding downstream 251331 17746530 ~ 17748502 (-)
G158632 NA non-coding downstream 604411 17394021 ~ 17395422 (-)
G158628 NA non-coding downstream 613279 17383342 ~ 17386554 (-)
G158892 NA non-coding upstream 10436 18012126 ~ 18015877 (-)
G158882 NA non-coding upstream 40220 18041910 ~ 18043476 (-)
G158947 NA non-coding upstream 191280 18192970 ~ 18193557 (-)
G158946 NA non-coding upstream 192562 18194252 ~ 18194524 (-)
G158948 LOC107599665,LOC107664257,LOC107714993,LOC107697859,LOC107706997 non-coding upstream 193709 18195399 ~ 18196369 (-)
coq10a si:dkey-190g6.2,LOC107671896,LOC107715030,LOC107598614,LOC107697969,LOC102210977,LOC108425511,LOC102797363 other downstream 577316 17413703 ~ 17422517 (-)
G158609 NA other downstream 656448 17339267 ~ 17343385 (-)
slc48a1a slc48a1a,LOC107671836,LOC107598487,LOC107594008,LOC107756371,LOC107697869,LOC107757747 other downstream 815448 17176625 ~ 17184385 (-)
G158336 LOC107716221,LOC107570608,LOC107586536,LOC106567035 other downstream 1641128 16355369 ~ 16358705 (-)
tac3a LOC107708854,LOC107571761,LOC107681951,LOC107586540,LOC107695797 other downstream 1756438 16240810 ~ 16243395 (-)
march9 march9,LOC107593952,LOC107664138,LOC107714987,LOC107706970,LOC107599679,LOC107697857,LOC107088728,LOC108433385,LOC103130462,LOC105930772 other upstream 44236 18045926 ~ 18058739 (-)
hnrnpa1b hnrnpa1b,LOC107664187,LOC107714994,LOC107707002 other upstream 229953 18231643 ~ 18235536 (-)
hoxc1a LOC107598919,LOC107707004,LOC107697929,LOC107594049,LOC107664160,LOC107714959 other upstream 294356 18296046 ~ 18302575 (-)
hoxc6a hoxc6a,LOC107593966,LOC107664205,LOC107714999,LOC107706971,LOC107697939,LOC107598897 other upstream 340644 18342334 ~ 18350347 (-)
G159076 LOC107715021,LOC107664216,LOC107593990,LOC107598736,LOC107697953,LOC107707026 other upstream 745701 18747391 ~ 18754712 (-)

Expression


Co-expression Network