hoxc6a (hoxc6a,LOC107593966,LOC107664205,LOC107714999,LOC107706971,LOC107697939,LOC107598897)


Basic Information

Item Value
gene id hoxc6a
gene name hoxc6a,LOC107593966,LOC107664205,LOC107714999,LOC107706971,LOC107697939,LOC107598897
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18342334 ~ 18350347 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU235355
ATCTATCGACTCGCGAGCTCGCGGTGCTGTTGAAATGATCTTAGCGCCagacgggttttttttttcttttctcccgTTTTCCCGTTGCTCGCTAGCCCCGGcggattttttaatttttttatttaaaaacgcGCTATAACGCCGTCTCGTCTCGCCTGCCTCATCGCCAGCAGTGACTGACCGTCCTCAGACGCCGCCGCCTCCCCAGTCTCCTTTCTACCCATCTCGTCCCCTAGAGGGGAAAACAGCCCCGATGGCCGGAGCGCGAGGGGTTAGCCTAAACGTGATCGTTTCTCCTCGAAAGGTGACATTTTTCCCGAGCGCGGGAGATTGGGATCCTAGTGCCGTTCCCCGGCGCGATCCGCTTCTGTGCGCCACCGAACGTGCGTCACGCAGACGACCGCGAACGCTGGTGTTGGGTACGGGTCAGACAGAAGGAGAGGTCGCCAGATCTACTCCAGATACCAAACCTTGGAACTGGAAAAAGAATTTCACTTCAATCGGTATCTGACCAGGCGCAGACGCATCGAGATCGCCAACGCTCTCTGCCTAACCGAGCGTCAAATCAAAATCTGGTTCCAGAATCGGCGCATGAAGTGGAAGAAAGAGACCAATCTGACTTCTACTGTACCGGGGAGCGAATCAACGGGCGCTCCTCAAGAGACCGAGAAGGAGACCGAGGAGGAAACCGaggaagctaaaaaaaaagattaggaAGTCCATTTCTCGTTCTCGAACGCCTGTTAACTGCAACGTAACTACCTAAACTCTGAGAATTTGCAAATATTAATGCATGGACCGTATACTCCGCTATTCCTTTGACtgccccctcctcctcctcctcctcctcctcctccgacCCCGAATACCGTACACGAGCTCTACAACAGCCACCACGCCactaacatacacacacgttGAAACAAATGGAGAgattgagagaaagaaagacgcACGTGTTATCCACCGTAATGTAACTCACGTCTCTTTGTATTGAAAATAGCTCCTTATCGGCTGCGTGGTGACAACGCCACAGATGAACTTTTTGTGTGGTTCTAGTATTATCATGTTGCTATAGGCTAGTAGAAATTACATTAGATGAAAATGTATTCGAATTTGATAAGTAGGCTACGTCTCCCCAACTATTAAGCCTCTGAACAGTACCCTAAGCATTCCAGAAGTGAAGGAAACTTCTTATatgcacattcatttttttgtggatGCATATTTGTACAATGAAACAAGCACTGACGGGATGAACTATACTACCTAAAtccttaatgcattttttttttcctttttattttttcttgataTTGCCTTTGCCCTGTCAGTGTTCTGTCGTTCAAAACGCCGCCGTCCCGGCGCATTAACTATTGAGAGAACTTCAAAATCATACATTTCATCATACTTGTAGCTGTATGCATATAAACTTGTCTTAAAGTGAGAATCACACCCATATGAAAACAAACGTATATCTTGTTACGCAATTATATTGTTTGTGTAAact
>XM_043224333.1
CTTACTGCTAGTTCATTAAGAAGAAAATTAGCTCTTTGTAAAACGCACGATTAAAAGTGTCGATTTATCTTCTCAATACACGTGGATAAGCTTTGTGCATAGAACAGATTAACTCGACGATTAATGCGCAAAAAGGCATAATTGATTGCTCGCGTGAGTGcctattctgtatttttgtgtgtgtttacttaaaCATTATCAACTGAAGCCACAAGGATAAGAAGCTACAAGCTCGATATTCCTCCGTACACAGCGCATTCAATTGGCTGAAAGTGGTCAGGTGACGCTGTCATATTGTCCTTCCATGAGCCAAGCCTTGGCTATAACACTTGCTTTGCGCGTCTTAACCGGAGActggaaattaatattattgaaatCCTTCTGAAGTTCGTTTGAAAGAGAGTTAGGAAAGAAGGCGGGAGACGCGTGTATGTGACAGAAGGAAGCGGACCCCAAAGCACAAAGAAAGTGCGAGATTGAGAGAGGGGAAATAAGATAGGAGGGTGAGTTGATGAGAGGGCGATAGGAAAGGTATGAATTCGTATTTCGCGAACCCGTCGCTCTCGTGCCATTTATCTGGTGGGCAAGAGGTTTTGCCCAACATGCCACTGAACACGACCACATATGATTCAGTCAGACATTTTTCGTCTTATGGCACCACTGTGACCCAAAACCGGATTTACGCGTCCCCTTTCTATTCACCTCAAGATAACGTTGTGTTTGGATCAAGTCGAGGACCGTACGAGTATGGATCTAACGTGTTTCTTCAAGATAAGGATGTGCTTCCCAGTTGCAGGCAAACTAGTATGGGACTAAACGCGCAGAGCCACGTTGCCCAGGAGTACAACCTGGAACAAGCTCGTGCAGGAACACAGGAACAGAAAGGGAACAACATTCAGATCTACCCGTGGATGCAGCGCATGAACTCGCACAGCGGTGTTGGGTACGGGTCAGACAGAAGGAGAGGTCGCCAGATCTACTCCAGATACCAAACCTTGGAACTGGAAAAAGAATTTCACTTCAATCGGTATCTGACCAGGCGCAGACGCATCGAGATCGCCAACGCTCTCTGCCTAACCGAGCGTCAAATCAAAATCTGGTTCCAGAATCGGCGCATGAAGTGGAAGAAAGAGACCAATCTGACTTCTACTGTACCGGGGAGCGAATCAACGGGCGCTCCTCAAGAGACCGAGAAGGAGACCGAGGAGGAAACCGaggaagctaaaaaaaaagattaggaAGTCCATTTCTCGTTCTCGAACGCCTGTTAACTGCAACGTAACTACCTAAACTCTGAGAATTTGCAAATATTAATGCATGGACCGTATACTCCGCTATTCCTTTGACtgccccctcctcctcctcctcctcctcctcctccgacCCCGAATACCGTACACGAGCTCTACAACAGCCACCACGCCactaacatacacacacgttGAAACAAATGGAGAgattgagagaaagaaagacgcACGTGTTATCCACCGTAATGTAACTCACGTCTCTTTGTATTGAAAATAGCTCCTTATCGGCTGCGTGGTGACAACGCCACAGATGAACTTTTTGTGTGGTTCTAGTATTATCATGTTGCTATAGGCTAGTAGAAATTACATTAGATGAAAATGTATTCGAATTTGATAAGTAGGCTACGTCTCCCCAACTATTAAGCCTCTGAACAGTACCCTAAGCATTCCAGAAGTGAAGGAAACTTCTTATatgcacattcatttttttgtggatGCATATTTGTACAATGAAACAAGCACTGACGGGATGAACTATACTACCTAAAtccttaatgcattttttttttcctttttattttttcttgataTTGCCTTTGCCCTGTCAGTGTTCTGTCGTTCAAAACGCCGCCGTCCCGGCGCATTAACTATTGAGAGAACTTCAAAATCATACATTTCATCATACTTGTAGCTGTATGCATATAAACTTGTCTTAAAGTGAGAATCACACCCATATGAAAACAAACGTATATCTTGTTACGCAATTATATTGTTTGTGTAAactgtgtattatttaataaaattcatgaaa

Function

symbol description
hoxc6a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including ectoderm; mesoderm; nervous system; pectoral fin; and somite. Orthologous to human HOXC6 (homeobox C6).

NR:

description
homeobox protein Hox-C6a-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09306 HOX_6; homeobox protein HoxA/B/C6

RNA

RNA id representative length rna type GC content exon number start site end site
TU235355 False 1510 lncRNA 0.47 2 18342361 18350347
XM_043224333.1 True 2061 mRNA 0.43 2 18342334 18345012

Neighbor

gene id symbol gene type direction distance location
hoxc5a hoxc5a,LOC107664112,LOC107593967,LOC107664111,LOC107697940,LOC107715000,LOC107706972,LOC107598908 coding downstream 1100 18339049 ~ 18341234 (-)
hoxc4a hoxc4a,hoxc4,LOC107664204,LOC107714997,LOC107598886,LOC108433407,LOC103034018 coding downstream 11633 18316637 ~ 18330701 (-)
hoxc3a LOC107714998,LOC107593965,LOC107664206,LOC107697835,LOC107706962 coding downstream 25572 18314833 ~ 18316762 (-)
copz1 copz1,LOC107664248 coding downstream 121954 18214578 ~ 18220380 (-)
lima1a LOC107714990,LOC107664165,LOC107593956,LOC107706995,LOC107697921 coding downstream 164844 18162460 ~ 18177490 (-)
hoxc8a hoxc8a,hoxc8,LOC107598875,LOC107697938,LOC107593970,LOC107664222,LOC107707008,LOC108433404 coding upstream 5314 18355661 ~ 18358381 (-)
hoxc10a hoxc10a,LOC107593968,LOC107664221,LOC107714961,LOC107706973,LOC107598838,LOC107697934 coding upstream 5851 18356198 ~ 18376163 (-)
hoxc9a hoxc9a,LOC107593969,LOC107714960,LOC107697937,LOC107707007,LOC107598864 coding upstream 10707 18361054 ~ 18366240 (-)
hoxc11a hoxc11a,LOC107593971,LOC107706974,LOC107715002,LOC107664237,LOC107697935,LOC107598846 coding upstream 29607 18379954 ~ 18382930 (-)
hoxc12a hoxc12a,LOC107664239,LOC107593973,LOC107715004,LOC107697936,LOC107707010 coding upstream 41603 18391950 ~ 18393519 (-)
G158955 NA non-coding downstream 95507 18244923 ~ 18246827 (-)
G158953 LOC107714996 non-coding downstream 103802 18237897 ~ 18238532 (-)
G158952 NA non-coding downstream 135876 18206143 ~ 18206458 (-)
G158950 NA non-coding downstream 138882 18203036 ~ 18203452 (-)
G158949 NA non-coding downstream 141368 18200767 ~ 18200966 (-)
LOC122328626 NA non-coding upstream 71512 18421859 ~ 18456506 (-)
G158984 NA non-coding upstream 90303 18440650 ~ 18442479 (-)
G158980 LOC107707015,LOC107697945,LOC107593978,LOC107598797,LOC107715007,LOC107664110 non-coding upstream 209073 18559420 ~ 18563142 (-)
LOC122329081 NA non-coding upstream 263329 18613676 ~ 18615145 (-)
G159048 LOC107714930,LOC107664105,LOC107593987 non-coding upstream 291915 18642262 ~ 18644688 (-)
hoxc1a LOC107598919,LOC107707004,LOC107697929,LOC107594049,LOC107664160,LOC107714959 other downstream 39759 18296046 ~ 18302575 (-)
hnrnpa1b hnrnpa1b,LOC107664187,LOC107714994,LOC107707002 other downstream 106798 18231643 ~ 18235536 (-)
march9 march9,LOC107593952,LOC107664138,LOC107714987,LOC107706970,LOC107599679,LOC107697857,LOC107088728,LOC108433385,LOC103130462,LOC105930772 other downstream 283595 18045926 ~ 18058739 (-)
coq10a si:dkey-190g6.2,LOC107671896,LOC107715030,LOC107598614,LOC107697969,LOC102210977,LOC108425511,LOC102797363 other downstream 919817 17413703 ~ 17422517 (-)
G158609 NA other downstream 998949 17339267 ~ 17343385 (-)
G159076 LOC107715021,LOC107664216,LOC107593990,LOC107598736,LOC107697953,LOC107707026 other upstream 397044 18747391 ~ 18754712 (-)

Expression


Co-expression Network