myt1a (myt1a,LOC107756375,LOC107708774,LOC107586511,LOC107571600,LOC107701718)


Basic Information

Item Value
gene id myt1a
gene name myt1a,LOC107756375,LOC107708774,LOC107586511,LOC107571600,LOC107701718
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 9549124 ~ 9562123 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223962.1
GAAATCACCGCAAAGATGAAGTTGTGTAAAACTTTTCTCGAGAATGAGTTCAGAGGGCAGCTGCTGAGCCAGAGGTGGACAAGAGGGGACAGAGTCAGCAGCTGTGAGAATAAGAGGAGTAGGAGACTAAAAATGAGCCAAGACGCAGATGAGAAGCGAACAAGGACACGCTCAAAAGGAATCAGAGTTCCTCTTGAGCTTGTTGGACAAGAGTACAGCTGCCCTACACCCGGATGTGACGGCTTAGGCCATGTCAGTGGAAAGTATGCACGACATAGAAGTGCATTGGGCTGCCCGTTGGCTAAGAAAAGAAAACTCCAGGAGGCAGAGGAAAATCAGCCAGCCCCCAAAAAGAAGCCCAACCCTCTAAAGTTGGCCATGGATGATGGGTTCAATGCAGATAGTGACACAAACAGTGAAACAGAAACGAAAGATGAGGGAGTAGAGTCTGAAGAGGACACTGCTGATAAAGAGATTgaagttaaagaaaaaacacttacaTCAGAAGCAATGACAGAAGAAATTTCACAAGTGGattcagaagagaaaaaaacacctctCAGAGAAACATCAAGTCCAGTTCCAGAGACCGAAACTGAGAAGGAAGAAGCCAACATCGAGGCCACATCCATCCAACAAATAACAATGGATACTGAGGCAGAGGAAGGGTTACAAGTCGCCGAAGAGATTCAGGCTCGAGAGGAAGAGGTAGAGGAGGAAGCAGAAGAGATTACAGAGGAGGAGCGAGTGACCCAGCAGCTGAAAGAGACCGATGAGCCTGTGACAACAGttgaggaagaagaagaggatgatgaggaagaggaagagggggAAGAGGAGACACAATGTTTGAGCCAGAAGAACAACTCGGACCACCAGTACTTTAGTGGAGACTTTGGCAAAATCCAGACCAAAGATACTGGAGAGGCAGAGAAGGAcagtgaggatgatgatgatgaggaagaAGACGAGGAGGAGATCCAATCACAGGTAGAACCTTCCTCTCTAATTTCCCCTGTTCCCCCTGCTTCAGCTCAGGAATTAGACATGATGACGCACAGCAACATCAATCTAAACCACCCTATTGGtgaagatgaggaggaggaggatgaagaagaaagagatgACGCTTCAGATAAAGACTCGCCCACCGTAGTCATCGAGCTGGGTTcagagggagaggaagaggaagaagaagaagaggaagatgaCGGAGAAGAAGAGGAGGCTGATGAAGCGGACGATGACGAGTTGGACAGCATGTCACataggtcagaggtcacagatGACTCAGAGACATATGACATGACACGGGGGAACCTGGGACTTCTGGAACAGGCCATTGCACTGAAAGCCAAACAAACCGGCCGCAGTTCTGACGAGAGCTGCTCTCCTGAGCAGCAGCACTACCACAGCTCAGAGGAGAGGATGAGTAAGTCCATGGACATCGCAGCTCGTAGAGCCTACTATGGCAAAGAGGGTTCTAGATCAGAGAAGAAGGAGGTAAAGTGCCCTACTCCAGGATGTGATGGGACAGGTCATGTGACTGGATTATACCCACACCACCGCAGCCTTTCTGGGTGCCCACACAAGGACAGAATCCCCCCAGAGATCTTGGCGATGCACGAGAACGTCCTAAAGTGCCCAACACCTGGATGCACTGGACAGGGACATGTGAACAGCAACCGCAACACACATCGCAGTCTCTCTGGCTGCCCCATTGCTGCTGCAGGGAAACACAAAAGCCATGAAAAGCAGTCACAACCGCAGACCTCTGTCAGTGATCCTGTCAGCGGAGGCTCAAACTCTGACAGAGTTCTCAGGCCGATGTGTTTTGTGAAACAGCTGGACATCCCTCAGTACGGTAGCTACAGGCCCAATGCCATGCCAGCCACTCCTCGTGCCAACCTGGCTAAGGAGCTGGAGAAGTATTCTAAGGTGTCCTTCGACTATGCAAGCTTCGATGTACAGGTGTTCGGCAAGCGCATGCTTGCACCCAAGATACCCACCAGCGAAACCTCACCTAAAGCCTTCAAATCCTCGTCCCCCAGCCACAGCCTGTCAGGAGGCTACACCAAAAGcagctcctcctccacctcaaGTGGGTACGATTACACCCATGATGCCGAAGCCGCACACATGGCTGCCACTGCCATTCTCAACCTGTCCACCCGCTGCTGGGAGATGCCCGAAAACCTCAGCACCAGACAGCCAGATCAGGCCAGCAAAGACATGGACATTGAGGTGGATGAGAATGGCACACTGGACCTCAGCATGAAGAAACCCAAGAGGGAAGGAGTCAGATCACCAGACCCATCATCATCCTCGTCATCATCTTCTCAACACCAGGGCGTCACCTCACCCCATTCCAGCCACACCTACAAACAAGAGGAGTGGGAGGGGCCTCTGGACTACACCAAATCAAACCGACAGAAAGAGGAGGAGCCAGAGGAGGTTGAATACACCACACACTCATACGCCTCCTCTGATGGAGACGATGATGATGCCACTCAGGAGAGCACGGAGGACAGGAAGTACCCTGGTGAGGTCACAACCTCCAGCTTCAAAGTCAAATTTCAGCCCAAGGACAGCAAGAAAGAGGTCTTGCTATGTCCCACCCCAGGTTGTGACGGCAGTGGACATATAACTGGGAACTATGCATCACACCGCAGTCTCTCTGGTTGTCCCCTTGCTGATAAAAGTCTTCGGACCCTCATGGCTGCCCACACTGCTGAACTTAAATGCCCTACCCCAGGTTGTGATGGATCAGGACACATAACTGGAAACTATGCTTCCCATAGAAGTCTGTCTGGATGTCCACGTGCCAAGAAGGGAGGAATCAAAACCACCCCGACTAAGGATGACAAGGAAGATTCTGAGCTCCTAAAGTGCCCGGTGCCAGGTTGTGACAGTCTGGGGCATATCAGTGGGAAATATGCCACCCACCGCAGTGCCTATGGGTGCCCGCTGGCAGCACGCCGGCAGAAGGAGGGCATGTTAAATGGCACACCATTCTCCTGGAAGGCCTTCAAGACTGAGGGCCCGACCTGCCCTACGCCAGGATGTGATGGATCAGGACATGCCAACGGCAGCTTTCTTACTCATCGCAGTTTATCGGGTTGCCCTAGAGCTTCAGCTAACAAGAAGAGAGCCAGGTTCCCAGGAGATGATTACATCAGCAAGAAATTCAGGGCAAGTGATGTTCTTGACAATGATGAAGACATAAAACAGCTGAACAAAGAAATCAATGAACTGAATGAATCAAACTCTGAGATGGAAGCAGACATGGCCAACCTCCATACACAGATCTCATCCATGGAGAAGAACCTCAAGAGCATGGAGGAAGAGAATAAACTCATAGAGGAGAAGAACGAGGCTCTGTTCATGGAACTGTCAGGCCTGAGCCAGGCTCTTATCCGCAGCCTTGCCAACATCCGTCTACCACAGATGCAAGAGCCCATCACCGAGCAGAATTTTGACACCTACGTGGACACCCTGACCCACATGTTCACCGATAAGGAGTGTTATCAGAACCCAGAGAACCGAGCCCTACTCGAGTCGATCAACCAGGCCGTCAAAGGCATTGAGGTGTGAGCAGAGGAGCGGCAGCTGGAAGACACTGTGGGTTATATAACCAGactaacaacataaaaatactgtttaaggACATTCAGGTTTTGTGTGTGGCGCCCTCCGTAAACGCGGAACGTTACGAGACCCGTGGAAGTCAGAGAAAAGGACCAAATTCCCATTCCAAATTATGCTGCTTAGCAATTTTGATGAGATACACGATCCTTTGCCTCTTAAACCAAGCTGGCTCTTCTTGTTTTGGGGTATCTTTTGGAGCAAACCATTTGTTACTGTTTTCTAGAGCAACTCTCACCGACACTGATCTGCCTTTTTACTTCCCTCAGTGCATGGAGGTTGCCGCGAACAATAAGTCGTGAGATTGTCGTGTGTCTGTGGAGGAGAGTCTATGTGTGTATGCGTAACAGAGTGTTTTATGTGTAATGTCCGAAGGTGAATTCACAATTAATGACCTCCCTTGACAAAATATGATTAGTATGCAGCACTGCTACATTTGATCCCTGTATGATAATGTTGTCTCATATTTGGTGTAAATGCTCTCCTGTTCCATTCAGTAATATTTATCGTATTTGAGAACATAGATATTGCACTTCCATGAATAGTTTGTAGTTCCATCGTcatgttattattgtaattattattattattattattattattattattatggctaTTTAAATTGGGTCCTTGAAATGTAAGtttaacttattatttattcatgttaagggttatgttgtttatttattaatcagtgTCTATTTATGGActtaatttatttcacaaagCAAAATTCTATACacagcttttaaacagttattAAGAGGAGAGACGTTGCCCTCTGCGTTGTGAAAGAGgcaatattttaagaatatcgACAGCAAATTGTTTTATAAACcttcctatttattttaaagacagaGATTTATAAtctcttttttaagtgcaaatattttctacctaacaatttttatattgttttttaatattcttcttTATTTAATGAGTTCTGTTTTCCATAAAAGTATTTTGACACCCTCCAGAGTGAAGTGGGTTGAACAGATatgatgtatttattgttatttatttagtatttaagaACAAATTGAATGGAGATCttgttgcatatttattttgtaaatgtctctGTGTTAGTGGTTGCTGCATATGGATAGTCTTTGCCCATGttgttgataaaataaatgggaATTCTATCACCTACAA

Function

symbol description
myt1a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within cranial skeletal system development. Predicted to be active in nucleus. Is expressed in brain; gonad; and midbrain hindbrain boundary neural rod. Orthologous to human MYT1 (myelin transcription factor 1).

NR:

description
myelin transcription factor 1-like isoform X1

GO: NA

KEGG:

id description
K23192 MYT1; myelin transcription factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223962.1 True 4809 mRNA 0.47 23 9549124 9562123

Neighbor

gene id symbol gene type direction distance location
pcmtd2a pcmtd2,LOC107708816,LOC107570992,LOC107701717,LOC107756374,LOC107656550,LOC108433859 coding downstream 782 9543486 ~ 9548342 (-)
thap3 LOC107656551,LOC107708819,LOC107570956 coding downstream 20989 9526592 ~ 9528135 (-)
camta1a camta1a,LOC107708820,LOC107570946,LOC107656552 coding downstream 32408 9215785 ~ 9516716 (-)
slc25a33 slc25a33,LOC107708828,LOC107695765,LOC107681985 coding downstream 406804 9135415 ~ 9142320 (-)
tmem201 tmem201,LOC107681977,LOC107695766,LOC107718817 coding downstream 413865 9124000 ~ 9135259 (-)
LOC122328677 LOC107656548,LOC107756378,LOC107708812,LOC107571042 coding upstream 53410 9615533 ~ 9621872 (-)
osbpl2a osbpl2a,LOC107571031,LOC107708810,LOC107656546,LOC107549069,LOC107756379,LOC107701722,LOC108433898 coding upstream 60330 9622453 ~ 9633367 (-)
LOC122328660 LOC107656533,LOC107571650,LOC107756347,LOC107708771,LOC107549029,LOC107701694,LOC101887148 coding upstream 100290 9662413 ~ 9674637 (-)
si:dkey-261l7.2 si:dkey-261l7.2,LOC107708806,LOC107571115,LOC107549066 coding upstream 199576 9761699 ~ 9764798 (-)
LOC122328653 phip coding upstream 205416 9767539 ~ 9798417 (-)
G155979 NA non-coding downstream 360227 9188513 ~ 9188897 (-)
G155968 NA non-coding downstream 395622 9153080 ~ 9153502 (-)
LOC122329247 NA non-coding downstream 476180 9070384 ~ 9072944 (-)
G155933 NA non-coding downstream 920021 8628699 ~ 8629103 (-)
G155825 NA non-coding downstream 923482 8624926 ~ 8625642 (-)
G156051 LOC107708813,LOC107656547,LOC107571009,LOC107756377 non-coding upstream 39839 9601962 ~ 9602477 (-)
G156054 NA non-coding upstream 45365 9607488 ~ 9607948 (-)
G156056 NA non-coding upstream 50127 9612250 ~ 9612596 (-)
G156235 NA non-coding upstream 116138 9678261 ~ 9815494 (-)
G156245 NA non-coding upstream 219985 9782108 ~ 9831125 (-)
ccdc187 LOC107708822,LOC107570908,LOC107718813,LOC107656553,LOC107695760,LOC107586514 other downstream 339160 9195310 ~ 9209964 (-)
ctnnbip1 ctnnbip1 other downstream 451822 9079532 ~ 9097302 (-)
sst6 LOC107681964,LOC107571825,LOC107695779,LOC107570713,LOC107681961 other downstream 622373 8921564 ~ 8926751 (-)
c23h1orf127 LOC107708840,LOC107570680 other downstream 629354 8913062 ~ 8919770 (-)
G155827 NA other downstream 920733 8625758 ~ 8628391 (-)
hmgn3 hmgn3,LOC107756386,LOC107671890 other upstream 239662 9801785 ~ 9808369 (-)
zgc:153284 LOC107701733,LOC107571300,LOC107756391,LOC107549061,LOC107708783 other upstream 269686 9831809 ~ 9833682 (-)
ankrd52a ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831,LOC107723718 other upstream 656350 10218473 ~ 10385967 (-)
LOC122329224 NA other upstream 793818 10355941 ~ 10359786 (-)
LOC122328779 taf8,LOC107723763,LOC107756368,LOC107549030,LOC107671856,LOC107594013,LOC107701755 other upstream 801782 10363905 ~ 10367369 (-)

Expression


Co-expression Network