csrnp2 (csrnp2,LOC107671888,LOC107715040,LOC107594006,LOC107598537,LOC107756414)


Basic Information

Item Value
gene id csrnp2
gene name csrnp2,LOC107671888,LOC107715040,LOC107594006,LOC107598537,LOC107756414
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 17294178 ~ 17302565 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223974.1
ATATGTGTCCCGTGCGGCATTCCTTCCTCTATTGTTACATTGTAACAAACCGGGGCAGAAGAGAGGCCCATAGGGTCCTCGGGCCGACAGATACTAcacatcatttttgtttttttttctttccttcggGGTGGAAATATAACGTTGCGATTTGTCTAAACATAGCGCAGAACACAACCACCTATCCGGAGGAAAAAAACCCTGAAGGCTCGGCTCtatttgttctttttgaatGCAGGCATTTTAAAGGATCAACTAAAGATTTTATCTGCACTTATTGGATGCATCTGCGCCgggatttttaattttcaatgaaTAAGGTCCTTGTCTGCCTTCGTCTGCCCCGTTTTAATTTTTACAGAGCTTGACTGCAACGTTGAGTGCTCGCATAGCCTTCTTGATACACAAAACCCCCATTTGTAGTTTATGTCAAGACTAATATCCATTGTTTACGATGCTTAAATGCTCGGACATCACTGTATCTTCGTGAATAAACTGCTATTTCCTTTTGGTCTGGCCATTTCGATGGGCTGAAGTCGCTTTTGTCTGTCATCTTGTAACCTTGTGGAAGTCTAAAGCCGAAATAGGTTCAAAATCCCCAAAGAAAAGAATCATCCAAATAAAGGAAGCACGAATCGAGCGACAGCTTCGCCGGTTTAAAGGCTCTCTATTTCTGCCCAAGACGCAGTGTTTCCATGGAGACAGTGTCATCTCGTGGCCTGAAGCGCAGATTCGAGGAGGTGGACAGCGGCTCGCCGTGTTCCACACCCAAAGATTCGGATGATGACATCTCTAGCAGTGACAGCGCTGATAGCTGCGACAGTCTCAATGCTCCCTCCAGCTCTCTCACACccCCCTCCATTCTCAGAAGACACAAAGCATCTTTAGGTCGTAAGCAGGTACGCTTTGACGCGGTGACAGTCTATTACTTCTCCAGAAGGCAGGGCTTTACCAGTGTGCCCAGTCAGGGTGGCAGCTCCCTAGGCATGGCACGCCATCACTGTGCTATACGACATTACACCCTTGGCGAGTTTGCACGAGAACAAGAGAGCAGTCACAAGCATGTGCTTCGTCAACACCTACGTCAAGAAAAGCTCAATGCTCGCAAATTAAAGCTGACACGGAATGGAACTGTGGATTGTCCTGAAGCAGAGTTGCTTACCCTAGATGACATATCAGATGAGGATCTGGATGTTGAGAGTGTAGAAGTGGATGATTGCTTCTTCTTGCAGCCTCTTCCAACCAAGAGGCGTCGGGCACTACTGAGGGCTTCAGGTATTGCCCGCATAGATGCCAGAGAGAAGGCTGAGTTACGTGCCATACGTTTGTCCAGGGAGGAGTGTGGCTGTGACTGCCGCTTCTACTGTGACCCTCGGCACTGTGGCTGTAGCCAAGCTGGAATAAAGTGCCAGGTGGACCGGATGTCCTTCCCATGTGGCTGCACCCGTGATGGTTGTGGTAATACAGCTGGCCGCATTGAGTTCAACCCTCTTCGTGTGCGTACTCACTATCTTCACACTATCATGAAACTTGACCTGGAAAAGAGAAGCCTGTTGGGTGTAAGGTCTGGAGAGGATTGTGGAGAAGAGACAGAATTAGTCTCTTCTccatctctgtctctttctccctTGGACTCAGATGTAGAGGTGGAAAGCCAGTGTGTTCAGGAGCTGCAAGAGGAGCAGTGCGACAGCCTGGAACGTGAGAACGAAACAGCCGTGCTTCACCTACAAAGTGCAGAGGAACGGGAAAGGAGACTGGAACAAGAAGAGCAGCAGGTCGAGGAGGCGCAAACCACTGACCCAACCCTTTGCCTCCTGCAGGGTGCCCTCACCGGCCAAGCAGGGATGGAGGGCATGGAAGGTGTTGAGGGAGTCCTTCTAGAAGGGCCTTTTCCTGAAGGTACCACCTTTCTGTGTATTACAGAGAACCATGCAGATGAACAGACCGAACAGAGGCTGCTGAAAGACCCTGCTTCTGTCCTCTATTATCAGGTAGATCATGTAGAGACAGCAGCCTTTGAGACACTTCCTGCGCAAGTAGAGGAAGTGGTGAGTGAAGGTGGGGATCCAGATAAGGAGAGCGACCGGCAAAAACAAGAAACCTGCGGGCAGGATTCGGCCAAGAGCTTGTCTGTCGAAGTACCTCCACCTCTCAAGGATGGGGAAGAAGAACATCTTTGTCCAGAACAGGCCTCAAATGATGGGGGATGCCTCGAGACGTGCCTGGCACTGGATGAAAAGGCAGTACAACTTCCTCCAGAAGTGTAGAGCCTATCACCTTTGCAGATGTTTTGCACAAGTTAGTCATTAAATTCAAAGAGAGCCTACTCCACACAGTGCGATGTTACAAGACTGcataatgttattaaatgttaaagaaaCAAGTTACCTTCATGGGTTTGTATCCAATTTAGCTGGAGATAAGCATGTACTGTGTTTGAAGTAGGTTGTCCGTGgtaaaataagttattaaaaagaaaaaaatagaataatttatgaaaaaaaaaatgaaaaaagaaactgaagaaaagCAGAGATCCTGATCTGACaacaagtgtttgtttttccagtaTGGTATCAGTTTATTACTTGATACTAGTGGGGAAAAAGTGGCCTTTATGTCGAGGAGCAAGCATTTTCAGGATTATTCAGCGCCTTTGTATGGCCTTTACAGTGTGTAGAGTTTCCGATACTGCACCCCAGCAACTAATTGGCACTGTCAGAAAGGTATATGTTAATGCTATGTTAATGTCTTGTTGGAATTACCACAATTTTAAGATCACAACTCTTAGCTGTTCATATTCTCAGTTTTTATGACAAAGTTCATAACATCAAAATGTATCTATGGACAGCTTTGTTgcttactgcaaaaaaaaaaaatatcctcaTTAACCTTGAAATGGAGCTTTTATAAAATTAAGTAGTTCTGAAGTTAGAATTACAAACGTTTCCGAAGGCCTTGAATGGTTTCTAACACTCTGAACCCTGTAATTATGGTAATTCTTCCAGGGCATGAATGCAacattagtaatatgcatatgGATAATGCTAACTCAGTGCTAACGATAAGAGAAGGGGTTGCTAATCTTAGAAGAGGGTGTTGTTTGTAGCATCCTTCCTGTGAATAGACCCAACAATCCTGGAAATACTTGGTTTTCATGTACTGTAATAGTGTTTTGCTAAGAGCTAGCATGAAGATGAGTGAAAAAGCTGCTTGTTCTCTGTATGCACGCTGAAAACTTGATTCGTTTGAACTTGCTGAGTGGGGATCAGGAGGATGAATGAATGTGCAAGCCATTTGCACAGCAGTTCTTTACTGATTTATCGTAGTCTTGACCTGACACCGTTTGAAGCTGTAGCCTACCGTCCCAGTTTGTggacgtttatttatttaccaccGCTTTGTATTGTTAGGGCGAGGACAATGTGTGTGAGTATTGTCATCTAcaatcattaatttttttttgttttttaggtgtgttttaatttttaaggaGTGAGTTCATACATTAATTGCACATCAAGCCTTTAAAGATTACGGACATTTTATAGGTGAATCTCATGAAAACATGTCTAGGTCACatttcaaaaggaaaaaaagaagaaagaaatagcattttacttcacattttacaattttttttacaattttactggCGTATTCTTCACATATTTTTGACACtgacactatatata

Function

symbol description
csrnp2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus. Orthologous to human CSRNP2 (cysteine and serine rich nuclear protein 2).

NR:

description
cysteine/serine-rich nuclear protein 2-like

GO: NA

KEGG:

id description
K17494 CSRNP; cysteine/serine-rich nuclear protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223974.1 True 3698 mRNA 0.44 5 17294178 17302565

Neighbor

gene id symbol gene type direction distance location
itga5 itga5,LOC107671874,LOC107697976,LOC107594039 coding downstream 36014 17214599 ~ 17258164 (-)
hrct1 chia,LOC107671898,LOC107594041,LOC107756356 coding downstream 117689 17171113 ~ 17176489 (-)
plxna2 plxna2,LOC107594012,LOC108425528 coding downstream 286892 16832085 ~ 17007286 (-)
LOC122329053 neurog1,LOC107598364,LOC107741101,LOC107664747,LOC107710304,LOC107662038,LOC107563607 coding downstream 612490 16680306 ~ 16681688 (-)
LOC122329052 LOC107716220,LOC107695793,LOC107586565,LOC107683357,LOC107571777,LOC107708795 coding downstream 616811 16674237 ~ 16677367 (-)
tfcp2 tfcp2,LOC107671887,LOC107715039,LOC107756415,LOC106572516 coding upstream 646 17303211 ~ 17315390 (-)
pou6f1 pou6f1,LOC107671889,LOC107715037,LOC107598516,LOC107756417,LOC107697973 coding upstream 14063 17316628 ~ 17330887 (-)
bin2a LOC107671903,LOC107715035,LOC107594002,LOC107697868,LOC107598577,LOC107756358 coding upstream 41537 17344102 ~ 17350948 (-)
racgap1 racgap1,LOC107671897,LOC107594001,LOC107697971,LOC107756422,LOC107714933,LOC107599350 coding upstream 51582 17354147 ~ 17361384 (-)
tmed4 tmed4,LOC107594055,LOC107671834,LOC107715031,LOC107598625,LOC107697966,LOC107707037 coding upstream 131167 17433732 ~ 17438013 (-)
G158605 NA non-coding downstream 2635 17289971 ~ 17291543 (-)
G158591 NA non-coding downstream 68609 17152825 ~ 17225569 (-)
G158587 NA non-coding downstream 211494 17082207 ~ 17082684 (-)
G158484 NA non-coding downstream 565835 16728101 ~ 16728343 (-)
G158483 NA non-coding downstream 566463 16727438 ~ 16727715 (-)
G158608 dazap2,LOC107715036,LOC107594003,LOC107671873,LOC107756418,LOC107598568 non-coding upstream 8763 17311328 ~ 17338919 (-)
G158628 NA non-coding upstream 80777 17383342 ~ 17386554 (-)
G158632 NA non-coding upstream 91456 17394021 ~ 17395422 (-)
G158706 LOC107599375,LOC107715025,LOC107671876,LOC107594031,LOC104946192 non-coding upstream 443965 17746530 ~ 17748502 (-)
LOC122328377 NA non-coding upstream 497277 17799842 ~ 17844102 (-)
slc48a1a slc48a1a,LOC107671836,LOC107598487,LOC107594008,LOC107756371,LOC107697869,LOC107757747 other downstream 109793 17176625 ~ 17184385 (-)
G158336 LOC107716221,LOC107570608,LOC107586536,LOC106567035 other downstream 935473 16355369 ~ 16358705 (-)
tac3a LOC107708854,LOC107571761,LOC107681951,LOC107586540,LOC107695797 other downstream 1050783 16240810 ~ 16243395 (-)
G158288 LOC107708856,LOC107570569,LOC107716212,LOC107681953,LOC107695729 other downstream 1124344 16143833 ~ 16169834 (-)
G158231 NA other downstream 1285263 16008106 ~ 16008915 (-)
G158609 NA other upstream 36702 17339267 ~ 17343385 (-)
coq10a si:dkey-190g6.2,LOC107671896,LOC107715030,LOC107598614,LOC107697969,LOC102210977,LOC108425511,LOC102797363 other upstream 111138 17413703 ~ 17422517 (-)
march9 march9,LOC107593952,LOC107664138,LOC107714987,LOC107706970,LOC107599679,LOC107697857,LOC107088728,LOC108433385,LOC103130462,LOC105930772 other upstream 743361 18045926 ~ 18058739 (-)
hnrnpa1b hnrnpa1b,LOC107664187,LOC107714994,LOC107707002 other upstream 929078 18231643 ~ 18235536 (-)
hoxc1a LOC107598919,LOC107707004,LOC107697929,LOC107594049,LOC107664160,LOC107714959 other upstream 993481 18296046 ~ 18302575 (-)

Expression


Co-expression Network