commd7 (commd7,LOC107671961,LOC107603136,LOC107747977,LOC107719919,LOC107563668)


Basic Information

Item Value
gene id commd7
gene name commd7,LOC107671961,LOC107603136,LOC107747977,LOC107719919,LOC107563668
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10765862 ~ 10772199 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223977.1
CTGATCGTGGAAGCGTCGAGCAGCGGAAGTGAGGAAGCAGATGTGACAGTCCGGGCTAGCAGCGGCGGAGCGCCACAGAAACGATGTTGCAGTTGCATTTCACGAACGATACGTTACCCGACAGTGTCAGCACTGACTTTCAGAACCTGAATAAATTCAGTGAGCAGCAGTTTGTGAGTCTGACAGAAATCTTGTACCAGTTCCTTCTAGAACCCAAAGAGTCAGAGCGGTTCTTGCATCAGCTGACGGAGTTTGCTGGAGAGAATGGGATGAGTGCGGGACCACTGAGGGCTTTGATGAAGAGTGTCCTCCTCCTACCTCATGgtgctttaaaaaaaaccctgacagCCGAACAGGTGAAGGCAGACTTACTCTCATTAGGATTAAATGAAGACAAGGCCAGTCATTTCTCTGACCAGTGGAGAATCCACTACCCTGTTTTGTCCAGACTGGCCGTGGGACAGACGCTTATGGTCAACCAGCTTGTTGACATGGAGTGGAAATTTGGTGtTACTGTTGGTACAAGTGAGCTTCAAAAGACTGGAAACATTTTTCTACAGCTGAAACTGGTGATCAGAAAAGGAAACACCACAGAAAATGTGTACATGGAGCTAACTTTACCTCAGTTCTACAACTTCCTCCATGAGATGGAGCGCGCCAAAGCCAGTATGGATTGTTTCAGTTAACTGAGGTTGTTGTAAGCAGTGTTTGCTTCTGTGCCTGTTAATCAGTAAACAACTGTAATGATGTTCCCATACTCACCAAATGATTGAAGAAGAAACTAATTATAATTCACTAATCTTAAGAAGTCGTGGGATTGTTTGCACTCATGgacatgtgtttttgttttggacaAATATGACATTCCACATTCACGCTCTTTATTGATGATCTTCTCTTTAATAAACCTTTGATACATGTGTTTGTA

Function

symbol description
commd7 Predicted to enable NF-kappaB binding activity. Predicted to be involved in negative regulation of NF-kappaB transcription factor activity; negative regulation of transcription, DNA-templated; and tumor necrosis factor-mediated signaling pathway. Orthologous to human COMMD7 (COMM domain containing 7).

NR:

description
COMM domain-containing protein 7

GO: NA

KEGG:

id description
K22563 COMMD7; COMM domain containing 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223977.1 True 928 mRNA 0.44 9 10765862 10772199

Neighbor

gene id symbol gene type direction distance location
LOC122328564 LOC107707753,LOC107672006,LOC107603149,LOC107657067,LOC107559477,LOC107747970 coding upstream 107115 10646963 ~ 10658747 (+)
LOC122328734 sdcbp2,LOC107657068,LOC107672005 coding upstream 199205 10555276 ~ 10566657 (+)
LOC122329231 LOC107656551,LOC107708819,LOC107570956 coding upstream 316531 10447808 ~ 10449331 (+)
LOC122328600 pcmtd2,LOC107708816,LOC107570992,LOC107701717,LOC107756374,LOC107656550,LOC108433859 coding upstream 333359 10429277 ~ 10432503 (+)
LOC122329277 ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831 coding upstream 384472 10368453 ~ 10381390 (+)
nol4lb nol4lb,nol4l,LOC107672011,LOC107563666,LOC107657055 coding downstream 14685 10786884 ~ 10870751 (+)
srms zgc:194282,srms,LOC107672012,LOC107560891,LOC107657057,LOC107747981,LOC108435233,LOC108276248,LOC107563676 coding downstream 102625 10874824 ~ 10884303 (+)
ptk6b LOC107719912,LOC107672013,LOC107747980,LOC107657056 coding downstream 112267 10884466 ~ 10892545 (+)
trnae-cuc_40 NA coding downstream 129870 10902069 ~ 10902140 (+)
gid8b gid8b,gid8,LOC107560896,LOC108266002,LOC101169608,LOC108276161,LOC108231957,LOC106566597 coding downstream 162764 10934963 ~ 10938573 (+)
G156432 NA non-coding upstream 37632 10727933 ~ 10728230 (+)
G156431 NA non-coding upstream 38698 10726918 ~ 10727164 (+)
G156417 NA non-coding upstream 62769 10702729 ~ 10703093 (+)
G156413 NA non-coding upstream 69304 10696302 ~ 10696558 (+)
G156398 NA non-coding upstream 91714 10666861 ~ 10674148 (+)
G156496 NA non-coding downstream 56968 10829167 ~ 10901823 (+)
G156551 NA non-coding downstream 261592 11033791 ~ 11035495 (+)
G156572 NA non-coding downstream 351893 11124092 ~ 11126634 (+)
G156568 NA non-coding downstream 376664 11148863 ~ 11152047 (+)
G156590 NA non-coding downstream 438842 11211041 ~ 11243036 (+)
G156414 LOC107707743,LOC107747988,LOC107671949,LOC107559475 other upstream 64967 10698798 ~ 10700895 (+)
G156399 LOC107707753,LOC107672006,LOC107603149 other upstream 193616 10563344 ~ 10572246 (+)
LOC122329061 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other upstream 211142 10551097 ~ 10554720 (+)
LOC122328447 LOC107603155,LOC107707751,LOC107672009 other upstream 247111 10514979 ~ 10518751 (+)
LOC122328383 tbx15,tbx18,LOC107712261,LOC107708785,LOC107656541 other upstream 338700 10415663 ~ 10427162 (+)
G156497 trim101,LOC107671958,LOC107560876,LOC107719918,LOC107656995,LOC107747989 other downstream 141705 10913904 ~ 10923988 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other downstream 304955 11077154 ~ 11085604 (+)
G156586 NA other downstream 402222 11174421 ~ 11177033 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other downstream 925215 11697414 ~ 11746570 (+)
LOC122328549 smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283 other downstream 958781 11730980 ~ 11732361 (+)

Expression


Co-expression Network