arhgef19 (arhgef19,LOC107673086,LOC107737548,LOC107591090,LOC107687425,LOC107716118)


Basic Information

Item Value
gene id arhgef19
gene name arhgef19,LOC107673086,LOC107737548,LOC107591090,LOC107687425,LOC107716118
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 13835056 ~ 13851039 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223983.1
ACACACAGGAATCcagacctacacacacacacacacacacacacacgcgcacacactctcATGCTCTTTCTCCCTCCTTGGCAGGAAGGACTCTCCTCTGAACCAGACGACAGCTTGCGCCTCTCTCCTTTTCCTCTGCTGGCAGGTGTtagaaataaaaccataaataagTGCAAGAGGCAGCCAGAGACAGCGCGAGAGAGCAGGACAAATGTCTGTCTTCGTTTGTTGCTGGAGAAAAGGGGACATATGAGGGAAAAGGAACGATATGGAGGAGAAACCTGTTATTTTGCGTAGCTAGAACAGTTATTaggcttttatttttctgctgtcaactgtatttttgtgtgtgaaggGGATTGAAGAGCACACTCGGATCATCTGGGCTCAAGCTGCAGCGCTGTTGATTGAGTTTGAGTGCAGCTGAGGGGAAACAAAGTAACCGAGAGGAACACAAGGCAGTCATGGACACTATAACACCTCAATCCTGGATGACTTGGATTTGCACATTGGAGTTGGATCCCATCCAGCCCACAGTCCACTGATACAAATGAgTACCCATGTGCCTCCTGAGCCATGCTCCCCGGCTATGGATTCTCTCCTCTCCTTGATTTCCAGCCTCACCTCCAAGCGTTCCATTGCAGAGGCGAGAGCTCTGACATGTGGTTCCCAGGTTCAGTTGAGACCCAGGCTCTGAGTGACTCTCGAGAAGGTAGGCCTCTCCTGCGACAGCATCAACACATTGCCGTGTGTCAGCAAGAGACGTTGGCCTTCATTGACCTTCAGCAGCCAAGTATTAATGGTTTCCAATCATGCACAGCAGAAAACTGTAGTTCCTCTCTTTGCTCCAAGCCTGTCGGATGCAATGGAAGCAGTCCATCTGATTTTGATAAGAATGGGAGTACAGACGCAACACTGGACAATTATTTGACCCAGCAGAGCAAAAATGTGGAAGGGGTTTACGATCAGACTTGGACACCCATTACTGCCTTACCTGAAACAGAAGTTAAGGGTCTCGGTTCTCGAGACTTGTTTCTGCCTCTGTCCTCTACATATGTACCTGAGAGCAGAAACTCTTTGGAGCCTCCGCAGCAGAGCTCCCCCTCTTCCCCCTTAGAGTTCCAGAGTTTGGACCCATTTCGCCCTCAACGACGCACATCTTTGGGATCCATAAAGGAGAAGTCCATAAGGCGTAAGATGAGGGTGTACTCTCCAGACACTATGAATGATGAATCTCTCAGCAGCCCAGGCGTGGAGTGTGATTACCTGCTTCCGACATCCTTTGAATCTTTCGTAGAAGGAGGCCTTGGCATGGTGGGTTCTACCATACCCACATCCAACAGTTCCAGCTCTCTCCCAGGGGTTGATGAGGACCTTTCTCTTTTTGCCTTACCGACACCTCCGAAACCTTTCTTAGATCCCCTTCAGGAGGGTGCCAGATTGGAGGATGTAAATGATGGTGGGAGGCAGAGGTTGGGCCTGGAAGACTGCGGAGCTCTGGAAGGCCCTGCCCTTAACAGTGGGACCTCGCTGCCTCTATCCCGTTCTCGCTCAGCAGACAATGAGCGCCGGCGCTTCTCTGCCTCTGAGCTCATCTCTCGTCTACAACTCTCCCAGAGGAAAAACTCTTTTACCCTTAAGCTGGGCAAGTCTCTTTCTGCTCGTGTGGCCTCCCGGGACCGCCACCTGTCTGGAAACCTCAGCTCAGACTACAAACCCAGCTCCAGACATCGCTTCTCAGGGGGATCAAGTGACAGTGCACCACATAGTCCAGTGGGGTCTGCACCACCTCTGCCCTCTGCTGACTGTAATCTGCCACAGCAAAGGAGAAGTTCCAAGCAAAGTATGAGAAAGGGTTCCATTGATGAGAATGGAGACAGTCCTCCCAGTAGCTCTAAACGGCTGTCACGCTTCTTGCCAAACTTGATTTTGTATCAGGAATACAGTGACGTTGCTATTAATAGGGAGATACAAAGGCAGCAGGGGGCAGAGCCAGGAACCGATGAAGAAAAAGGAGACTCTGTGTCCTCTGGCAACCTGTCTCCATCCAGTTCATTCCGCTCATCTCGAGGCTCTGCATTTTCCCTTTGGCAAGATATTCCTGATGTTCGGTCCAGTGGACAACTTGACAACTTCAGCAACGAAGAGCGTAAACTGCAGGAGgCCAAGTTTGAATTGGTGACGTCAGAGGCCTCATACATACGCAGCTTGTCTATTGCAGTTGACCATTTCATGATGTCTCCTGAGCTGTGTGAGTGTCTTGGGACACAGGAGAGGCAATGGCTCTTCTCCAAACTGCCTGATGTAAAAGAAGTTAGTGAGAGATTTCTTCAAGATTTGGAGCACAGGTTAGAAGGGGACATTCTGCGTTTTGATGTGTGTGACATTGTCCTTGACCACTGTCCTGCACTGCGGAGGGTTTATCTGCCTTATGTCACAAATCAAGCCTATCAGGAACAGACCTATCAACGGCTACTGCAAGAGAATCCCCGTTTCCCTGGAATCCTTGCCCGCCTGGAAGAGGACCCAATATGCCAGAGGCTGCCTCTTACATCATTCCTTATCCTTCCTTTTCAAAGGATCACACGCCTCAAAATGCTAGTGGAGAATATCTTGAAGAGAACAACGCCTGGATCACGAGATGAGGACACAGCCACCAAAGCACTTAATGAGCTCAAAAAGATAATAAAGGAATGTAACTCCAGTGTGCAGTCAATGAAGAGGATGGAAGAACTAATTCATCTAAACAAGAAAATTCACTTTGAGGGCAAGatttttcctCTCATCTCTCAGTCTCGTTGGTTGGTCAAACATGGTGAACTGCTAGAAGTGGACACACAGAACTTGAGTATTTCTGGGTCCAAGTTTAAACTAACCACTCGGCCTGTGTACCTTCATCTGTTTAATGACTGTCTTCTGCTGTCCCGAAGGAAGGACACGTGGAAGTTCATGGTGTTTGTACATGCAAAGATTGAGGACCTTAAGGTGAAAGATCTAAGCCAGAAACTTCAAGGAATCTCGGGCTTCATCTTCTATCTGCAGTTATGTGAGGGGCAACAGCTAAAACACCAGATTCTGCTCAAGTCACCCACAGAGAGCAGCAAACAGAGGTGGATAACAGCTATGTTTCCCTCCGATCCAAAGACTGCTATTGAGCAGACCAATGAGAATGATGATCTATCTCAAGTCCAGTGCATCAAGAGCTACCAGTCTCAGGAGCATGATGAGTTAACGCTGGAAAAGGCAGACATCCTTCAAGCTGTAACAATTACAAGCGATGGGTGGGTAGAGGGGATCCGGTTGTCGGATGGAGAGCGGGGCTGGTTCCCCAAAACGTACGTGGAGGAGATCACAAGCCGCAGTGCTCGTTTGCGAAACCTCCGTGAAAACATTCGCATTAAATGTGTCTCACAAAAATTGGAGGGAGAGACTCTCTGAGACCTTGAAAGTCTGGGGCATTGTTTTACTTAAAGCTTCTTGCATTTGCTTTAGCAATCCAGAGTAAATTTGTACATCACTGCAAATTTGTGTGAATATTCCATGGCTAACATTTTAGCTTTATTAAGGTATGCTGTAAAAATCTAAACTATGCATTGCATCTAGGGAGGACAAAATGTGCcacataaaaaaagatcaattaatttattaaactgaaaataaaatatataagtttGCAAAgttttacaaatgtacaaaaaatatttaattattaaaaggaatattaagattacatttttaaaattaaaatacaaattaatgaaaaatatttgttttacacatctattttcattttaatgaattattgattTCATCCTTGTCTGATGCTACTAGTCCTCCTTATTCACTTAAGAGTTTTGCACTTCAGGTTTTAAGTATTCCTAGATCTTCAAGTGATATAGCCTTGGTTACATTCTACGGCTCGCTTGCAAAGAAATGCATGTGTTGTTACTGCATGTAGCATATGGTGCTGAGCTTTCTGACAGTCCATAGACACAAACCACTCAAAATACAGCTGTCTCAGGCTCACCATGTGGGTGGATGAAGTCTGGATATGTcagctgttaaaatgtttaGCAAACAAGTTCCAATTTAAATGGGTTAGTTTTAGGTGGTAAAGCAGCCATTTCTCTCTAAAAGTGTATAAGGACTTCTCTCTGACTTGGTTAAATAAAGTGAGATGTCTTGTTGGCAGATCACTGAACAGCTAAATGCTTGCCTTtactagtaaaaaaaacaaattggaACCAaatttggattattattatttttttttttttgaatgatgttgctatagcaacataaatattagttaatgcCACTAGTCTTCTGTAGataataatttactaaatagTACTGGCATAATGACAAGAAGTGTTCTTTCAAATATCGACCATTATTTATGTCAGTGATActgctgtttgtgtattttgttttggtaaAGCAGATTTTGTGGGCAATTTCTTTGTGGAGTACTGGTATCCTGAGCATGTTAAatcacatttgaaatataatccTTTACGGTGactttgtatataaataaatgctatattcTAGTTGAAA

Function

symbol description
arhgef19 Predicted to enable guanyl-nucleotide exchange factor activity. Acts upstream of or within epidermis development and neural tube closure. Is expressed in post-vent region. Orthologous to human ARHGEF19 (Rho guanine nucleotide exchange factor 19).

NR:

description
PREDICTED: rho guanine nucleotide exchange factor 19

GO:

id name namespace
GO:0035023 regulation of Rho protein signal transduction biological_process

KEGG:

id description
K20691 ARHGEF19, WGEF; Rho guanine nucleotide exchange factor 19

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223983.1 True 4560 mRNA 0.45 17 13835056 13851039

Neighbor

gene id symbol gene type direction distance location
LOC122328742 rnf223,LOC107673070,LOC107716082,LOC107591144,LOC107593948,LOC107737699,LOC107687479 coding downstream 51314 13779025 ~ 13783742 (-)
her9 her9,LOC107716081,LOC107593950,LOC107687478,LOC107737700,LOC107591146,LOC107703052 coding downstream 339666 13493581 ~ 13495390 (-)
LOC122328822 LOC107703053,LOC107737553,LOC107687419,LOC107591147 coding downstream 392599 13436542 ~ 13442457 (-)
noc2l noc2l,LOC107737559,LOC107687416,LOC107716108,LOC107703058 coding downstream 433386 13376444 ~ 13401670 (-)
ca6 ca6,LOC107737562,LOC107703061,LOC107591102,LOC107687477,LOC107593430 coding downstream 706418 13123448 ~ 13128638 (-)
ano11 ano11,ano7l1,LOC107737547,LOC107591089,LOC107716119,LOC107593934,LOC107687426,LOC107673051 coding upstream 1427 13852466 ~ 13868569 (-)
plekhm2 plekhm2,LOC107737546,LOC107687427,LOC107716120,LOC107673107 coding upstream 18349 13869388 ~ 13881718 (-)
ddost ddost,LOC107673085,LOC107687429 coding upstream 31349 13882388 ~ 13886080 (-)
zbtb17 LOC107673084,LOC107737543,LOC107591087,LOC107687428,LOC107716122 coding upstream 36157 13887196 ~ 13897098 (-)
hspb7 hspb7,LOC107591086,LOC107578967,LOC107716085 coding upstream 46767 13897806 ~ 13901112 (-)
G157826 NA non-coding downstream 9467 13823993 ~ 13825589 (-)
G157813 NA non-coding downstream 61748 13772775 ~ 13773308 (-)
G157799 NA non-coding downstream 87885 13742257 ~ 13747171 (-)
G157765 NA non-coding downstream 399195 13433755 ~ 13435861 (-)
G157365 NA non-coding downstream 713030 13121813 ~ 13122026 (-)
G157863 NA non-coding upstream 206798 14057837 ~ 14075937 (-)
G157874 NA non-coding upstream 290900 14141939 ~ 14142168 (-)
G157875 LOC107673069,LOC107737697,LOC107593917,LOC107591119,LOC107716140,LOC107687444 non-coding upstream 292623 14143662 ~ 14143930 (-)
G157880 NA non-coding upstream 385313 14236352 ~ 14237014 (-)
G157885 NA non-coding upstream 391542 14242581 ~ 14243955 (-)
G157373 LOC107591099,LOC107703059,LOC107737560 other downstream 552729 13280256 ~ 13282327 (-)
G157367 NA other downstream 617648 13141078 ~ 13217408 (-)
G156985 NA other downstream 1910406 11922844 ~ 11924650 (-)
atp2b3b atp2b3b,atp2b3,LOC107737604,LOC107712727,LOC107672007,LOC107593407 other downstream 1977088 11763709 ~ 11857968 (-)
zbtb48 LOC107673103,LOC107716144,LOC107591072,LOC107687447,LOC107737528 other upstream 371770 14222809 ~ 14233051 (-)
G157909 LOC107673054,LOC107737519,LOC107716153,LOC107591065 other upstream 475927 14326966 ~ 14330784 (-)
fitm2 LOC107673062,LOC107737511,LOC107568407,LOC107564660,LOC107716178,LOC107668335 other upstream 719308 14570347 ~ 14589622 (-)
LOC122328902 LOC107737500,LOC107673074,LOC107695835,LOC107564653,LOC108275744 other upstream 833851 14684890 ~ 15301682 (-)
LOC122328913 zgc:162898,c4h15orf61,LOC107738714,LOC107686305,LOC107583911,LOC107718314,LOC107596966,LOC107672207 other upstream 1196113 15047152 ~ 15048344 (-)

Expression


Co-expression Network